Wall clock time and date at job start Sat Apr 11 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99917 * 2 1 4 4 C 1.38216 * 120.00190 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00079 * 0.02606 * 5 4 3 7 7 C 1.50700 * 119.99903 * 179.97438 * 6 5 4 8 8 C 1.50702 * 115.54765 * 209.93686 * 7 6 5 9 9 O 1.21272 * 120.00493 * 245.83661 * 8 7 6 10 10 N 1.34778 * 119.99483 * 65.83923 * 8 7 6 11 11 C 1.47355 * 135.88362 * 4.82361 * 10 8 7 12 12 C 1.52256 * 87.47401 * 154.22225 * 11 10 8 13 13 C 1.47354 * 135.87497 * 185.18838 * 10 8 7 14 14 C 1.53716 * 116.39512 * 142.36910 * 12 11 10 15 15 C 1.55185 * 101.38790 * 165.09598 * 14 12 11 16 16 N 1.47555 * 105.02752 * 324.50589 * 15 14 12 17 17 C 1.36943 * 125.65774 * 203.91268 * 16 15 14 18 18 H 1.07996 * 119.99742 * 179.97438 * 17 16 15 19 19 C 1.38806 * 119.99721 * 359.97438 * 17 16 15 20 20 N 1.31619 * 120.00360 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99883 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47202 * 59.99554 * 21 19 17 23 23 H 1.48497 * 109.47370 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46781 * 299.99610 * 21 19 17 25 25 C 1.47405 * 108.68389 * 23.89633 * 16 15 14 26 26 C 1.52997 * 117.49685 * 64.23396 * 7 6 5 27 27 C 1.52995 * 117.50118 * 355.60994 * 7 6 5 28 28 C 1.38210 * 120.00149 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47114 * 270.02262 * 1 2 3 30 30 H 1.08999 * 109.46863 * 30.02194 * 1 2 3 31 31 H 1.08997 * 109.47227 * 150.02113 * 1 2 3 32 32 H 1.08000 * 119.99987 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00205 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.99616 * 179.97438 * 5 4 3 35 35 H 1.09002 * 113.53155 * 268.84625 * 11 10 8 36 36 H 1.08996 * 113.53005 * 39.48748 * 11 10 8 37 37 H 1.08995 * 113.53581 * 320.50082 * 13 10 8 38 38 H 1.08996 * 113.53794 * 91.15477 * 13 10 8 39 39 H 1.09001 * 111.04136 * 283.11897 * 14 12 11 40 40 H 1.09005 * 111.04076 * 47.06710 * 14 12 11 41 41 H 1.09001 * 110.32573 * 205.62264 * 15 14 12 42 42 H 1.08993 * 110.41588 * 83.43865 * 15 14 12 43 43 H 0.97002 * 120.00238 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.99302 * 238.51621 * 25 16 15 45 45 H 1.09007 * 110.02406 * 117.20697 * 25 16 15 46 46 H 1.08998 * 117.50501 * 0.02562 * 26 7 6 47 47 H 1.09002 * 117.49744 * 145.01977 * 26 7 6 48 48 H 1.08994 * 117.49732 * 214.98038 * 27 7 6 49 49 H 1.09007 * 117.49526 * 359.97438 * 27 7 6 50 50 H 1.08000 * 119.99958 * 359.71747 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 6 3.6386 -3.6538 -0.6797 9 8 3.2779 -4.6122 -0.0299 10 7 3.4173 -3.6188 -2.0087 11 6 3.7677 -2.7119 -3.1160 12 6 3.6508 -3.9116 -4.0462 13 6 2.7138 -4.4675 -2.9866 14 6 3.0396 -3.6453 -5.4313 15 6 3.4383 -4.9359 -6.1953 16 7 4.7717 -5.2928 -5.6739 17 6 5.7097 -6.0455 -6.3287 18 1 6.6603 -6.2515 -5.8594 19 6 5.4387 -6.5436 -7.5957 20 7 4.2800 -6.2929 -8.1674 21 14 6.7180 -7.5710 -8.4887 22 1 7.0290 -8.7811 -7.6864 23 1 6.1876 -7.9793 -9.8143 24 1 7.9542 -6.7694 -8.6753 25 6 4.9267 -4.7043 -4.3313 26 6 5.1988 -2.8190 1.2207 27 6 5.8592 -2.4372 -0.1056 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6582 2.1326 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0014 35 1 3.0184 -1.9424 -3.3020 36 1 4.7785 -2.3101 -3.0461 37 1 2.8427 -5.5351 -2.8086 38 1 1.6715 -4.1864 -3.1367 39 1 1.9559 -3.5468 -5.3684 40 1 3.4850 -2.7639 -5.8927 41 1 3.4903 -4.7409 -7.2665 42 1 2.7254 -5.7345 -5.9906 43 1 4.0904 -6.6413 -9.0527 44 1 5.7903 -4.0397 -4.3131 45 1 5.0485 -5.4938 -3.5895 46 1 5.2223 -2.0839 2.0251 47 1 5.2645 -3.8610 1.5340 48 1 6.3594 -3.2279 -0.6648 49 1 6.3175 -1.4505 -0.1743 50 1 1.6581 -2.1322 0.0056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073462898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:07 Heat of formation + Delta-G solvation = 85.453175 kcal Electronic energy + Delta-G solvation = -29980.581120 eV Core-core repulsion = 26168.633309 eV Total energy + Delta-G solvation = -3811.947811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97755 -39.89479 -38.46595 -36.51592 -35.63065 -32.74700 -32.23897 -31.09320 -29.75595 -28.41998 -27.14723 -26.34532 -25.85452 -24.46032 -23.47330 -22.89574 -22.22620 -20.85312 -20.34931 -18.74132 -18.16004 -17.46289 -16.87006 -16.58419 -16.01198 -15.55217 -15.29397 -14.93287 -14.78108 -14.49119 -14.41241 -14.01852 -13.76154 -13.61746 -13.28788 -13.16893 -12.77568 -12.55555 -12.46534 -12.43143 -12.14645 -12.06823 -11.85281 -11.53748 -11.50465 -11.30321 -11.13207 -10.97324 -10.86391 -10.77753 -10.71030 -10.44658 -10.12592 -10.03766 -9.80107 -9.70145 -9.43546 -8.96468 -8.73044 -8.65520 -8.54001 -6.85141 -5.66219 -3.07755 1.07588 1.16861 2.57016 2.86184 3.33440 3.40469 3.44826 3.45911 3.79379 4.22701 4.30877 4.46081 4.55069 4.61937 4.66588 4.71736 4.79743 4.88508 5.01619 5.09147 5.11816 5.23694 5.34458 5.36303 5.42782 5.46829 5.49234 5.56142 5.59640 5.60000 5.66551 5.68985 5.76572 5.82819 5.88864 5.91705 5.93185 5.96862 6.17049 6.24606 6.26704 6.34738 6.39742 6.50762 6.56063 6.70045 6.75039 6.76990 7.49407 7.60849 7.83625 7.85014 8.22885 8.34400 9.20965 9.81334 10.46147 11.37750 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002762 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.628453 B =10136.670774 C =10694.742601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.031 4.031 7 C -0.117 4.117 8 C 0.580 3.420 9 O -0.542 6.542 10 N -0.633 5.633 11 C 0.118 3.882 12 C -0.102 4.102 13 C 0.121 3.879 14 C -0.128 4.128 15 C 0.154 3.846 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.166 3.834 26 C -0.134 4.134 27 C -0.155 4.155 28 C -0.108 4.108 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.013 0.987 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 16.811 16.421 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.130 4.130 5 C -0.140 4.140 6 C -0.031 4.031 7 C -0.120 4.120 8 C 0.369 3.631 9 O -0.419 6.419 10 N -0.366 5.366 11 C -0.005 4.005 12 C -0.104 4.104 13 C -0.001 4.001 14 C -0.168 4.168 15 C 0.029 3.971 16 N -0.330 5.330 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.040 3.960 26 C -0.171 4.171 27 C -0.192 4.192 28 C -0.126 4.126 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.139 16.152 16.796 23.667 hybrid contribution 0.557 -0.510 -0.421 0.865 sum -3.582 15.642 16.375 22.927 Atomic orbital electron populations 1.20801 0.91095 1.02936 1.02361 1.19882 0.96151 0.92861 0.99192 1.21031 0.94304 0.97404 1.01476 1.21076 0.94244 0.97753 0.99896 1.20984 1.00027 0.91592 1.01395 1.18707 0.92983 0.91644 0.99772 1.20063 0.93409 0.93481 1.05085 1.18752 0.78687 0.86137 0.79523 1.90698 1.52958 1.34779 1.63461 1.49666 1.54256 1.27938 1.04784 1.22952 1.01212 0.94046 0.82283 1.22166 0.98048 0.95629 0.94530 1.22878 0.96271 0.97154 0.83755 1.22767 0.98795 1.01633 0.93571 1.21971 0.85087 0.89712 1.00317 1.44602 1.14852 1.60494 1.13064 1.19017 0.94904 1.23687 0.97456 0.90588 1.24769 0.97322 1.01048 0.97425 1.69779 1.21742 1.49665 1.15926 0.86155 0.80423 0.80028 0.78908 1.21237 1.21558 1.21158 1.20716 0.92314 0.94121 0.88818 1.23075 0.99462 1.03705 0.90902 1.23201 0.91237 1.04054 1.00704 1.20853 0.93317 0.97798 1.00627 0.91151 0.91422 0.91432 0.86115 0.85892 0.85746 0.89825 0.90426 0.90133 0.89846 0.91905 0.91355 0.87568 0.96888 0.93672 0.95386 0.95849 0.87769 0.87396 0.87661 0.87420 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.08 -0.80 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 5 C -0.12 -1.16 9.36 -39.58 -0.37 -1.53 16 6 C -0.03 -0.35 5.48 -104.62 -0.57 -0.92 16 7 C -0.12 -1.45 2.19 -156.81 -0.34 -1.79 16 8 C 0.58 9.18 6.16 -10.98 -0.07 9.11 16 9 O -0.54 -10.49 17.48 5.56 0.10 -10.39 16 10 N -0.63 -9.55 3.70 -185.47 -0.69 -10.24 16 11 C 0.12 1.60 7.82 -7.45 -0.06 1.54 16 12 C -0.10 -1.69 1.05 -155.11 -0.16 -1.85 16 13 C 0.12 1.92 7.90 -7.59 -0.06 1.86 16 14 C -0.13 -2.23 6.49 -25.20 -0.16 -2.39 16 15 C 0.15 3.59 5.90 -2.31 -0.01 3.58 16 16 N -0.60 -15.18 3.41 -170.37 -0.58 -15.76 16 17 C -0.22 -6.15 10.28 -15.06 -0.15 -6.30 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.17 3.41 6.79 -3.61 -0.02 3.39 16 26 C -0.13 -1.44 9.73 -26.73 -0.26 -1.70 16 27 C -0.16 -1.58 9.57 -26.73 -0.26 -1.83 16 28 C -0.11 -1.27 8.97 -39.58 -0.36 -1.62 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.97 5.95 -52.49 -0.31 0.66 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 38 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 39 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.02 0.51 7.92 -51.92 -0.41 0.10 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.11 1.26 8.00 -51.93 -0.42 0.85 16 48 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.11 0.86 6.10 -51.92 -0.32 0.54 16 50 H 0.12 1.53 7.35 -52.49 -0.39 1.15 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -32.17 403.09 -11.56 -43.72 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.00 Total: 1.23 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -4.00 Total: -5.65 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.71 Total: -51.92 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.17 -11.56 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073462898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.177 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds