Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99917 * 2 1 4 4 C 1.38216 * 120.00190 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00079 * 0.02606 * 5 4 3 7 7 C 1.50700 * 119.99903 * 179.97438 * 6 5 4 8 8 C 1.50702 * 115.54765 * 209.93686 * 7 6 5 9 9 O 1.21272 * 120.00493 * 245.83661 * 8 7 6 10 10 N 1.34778 * 119.99483 * 65.83923 * 8 7 6 11 11 C 1.47355 * 135.88362 * 4.82361 * 10 8 7 12 12 C 1.52256 * 87.47401 * 154.22225 * 11 10 8 13 13 C 1.47354 * 135.87497 * 185.18838 * 10 8 7 14 14 C 1.53716 * 116.39512 * 142.36910 * 12 11 10 15 15 C 1.55185 * 101.38790 * 165.09598 * 14 12 11 16 16 N 1.47555 * 105.02752 * 324.50589 * 15 14 12 17 17 C 1.36943 * 125.65774 * 203.91268 * 16 15 14 18 18 H 1.07996 * 119.99742 * 179.97438 * 17 16 15 19 19 C 1.38806 * 119.99721 * 359.97438 * 17 16 15 20 20 N 1.31619 * 120.00360 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99883 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47202 * 59.99554 * 21 19 17 23 23 H 1.48497 * 109.47370 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46781 * 299.99610 * 21 19 17 25 25 C 1.47405 * 108.68389 * 23.89633 * 16 15 14 26 26 C 1.52997 * 117.49685 * 64.23396 * 7 6 5 27 27 C 1.52995 * 117.50118 * 355.60994 * 7 6 5 28 28 C 1.38210 * 120.00149 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47114 * 270.02262 * 1 2 3 30 30 H 1.08999 * 109.46863 * 30.02194 * 1 2 3 31 31 H 1.08997 * 109.47227 * 150.02113 * 1 2 3 32 32 H 1.08000 * 119.99987 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00205 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.99616 * 179.97438 * 5 4 3 35 35 H 1.09002 * 113.53155 * 268.84625 * 11 10 8 36 36 H 1.08996 * 113.53005 * 39.48748 * 11 10 8 37 37 H 1.08995 * 113.53581 * 320.50082 * 13 10 8 38 38 H 1.08996 * 113.53794 * 91.15477 * 13 10 8 39 39 H 1.09001 * 111.04136 * 283.11897 * 14 12 11 40 40 H 1.09005 * 111.04076 * 47.06710 * 14 12 11 41 41 H 1.09001 * 110.32573 * 205.62264 * 15 14 12 42 42 H 1.08993 * 110.41588 * 83.43865 * 15 14 12 43 43 H 0.97002 * 120.00238 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.99302 * 238.51621 * 25 16 15 45 45 H 1.09007 * 110.02406 * 117.20697 * 25 16 15 46 46 H 1.08998 * 117.50501 * 0.02562 * 26 7 6 47 47 H 1.09002 * 117.49744 * 145.01977 * 26 7 6 48 48 H 1.08994 * 117.49732 * 214.98038 * 27 7 6 49 49 H 1.09007 * 117.49526 * 359.97438 * 27 7 6 50 50 H 1.08000 * 119.99958 * 359.71747 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 6 3.6386 -3.6538 -0.6797 9 8 3.2779 -4.6122 -0.0299 10 7 3.4173 -3.6188 -2.0087 11 6 3.7677 -2.7119 -3.1160 12 6 3.6508 -3.9116 -4.0462 13 6 2.7138 -4.4675 -2.9866 14 6 3.0396 -3.6453 -5.4313 15 6 3.4383 -4.9359 -6.1953 16 7 4.7717 -5.2928 -5.6739 17 6 5.7097 -6.0455 -6.3287 18 1 6.6603 -6.2515 -5.8594 19 6 5.4387 -6.5436 -7.5957 20 7 4.2800 -6.2929 -8.1674 21 14 6.7180 -7.5710 -8.4887 22 1 7.0290 -8.7811 -7.6864 23 1 6.1876 -7.9793 -9.8143 24 1 7.9542 -6.7694 -8.6753 25 6 4.9267 -4.7043 -4.3313 26 6 5.1988 -2.8190 1.2207 27 6 5.8592 -2.4372 -0.1056 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6582 2.1326 -0.0004 33 1 4.1204 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0014 35 1 3.0184 -1.9424 -3.3020 36 1 4.7785 -2.3101 -3.0461 37 1 2.8427 -5.5351 -2.8086 38 1 1.6715 -4.1864 -3.1367 39 1 1.9559 -3.5468 -5.3684 40 1 3.4850 -2.7639 -5.8927 41 1 3.4903 -4.7409 -7.2665 42 1 2.7254 -5.7345 -5.9906 43 1 4.0904 -6.6413 -9.0527 44 1 5.7903 -4.0397 -4.3131 45 1 5.0485 -5.4938 -3.5895 46 1 5.2223 -2.0839 2.0251 47 1 5.2645 -3.8610 1.5340 48 1 6.3594 -3.2279 -0.6648 49 1 6.3175 -1.4505 -0.1743 50 1 1.6581 -2.1322 0.0056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073462898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = 68.699346 kcal Electronic energy + Delta-G solvation = -29981.307621 eV Core-core repulsion = 26168.633309 eV Total energy + Delta-G solvation = -3812.674312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15856 -40.88769 -39.55049 -37.59785 -37.24200 -34.13321 -33.39783 -31.88488 -31.41962 -29.95811 -27.95057 -27.70919 -27.28235 -25.84262 -24.74209 -23.66960 -23.09494 -22.20955 -21.69226 -19.96969 -19.43557 -18.85843 -18.28771 -17.56579 -17.27349 -16.83906 -16.53746 -16.22028 -15.94620 -15.73358 -15.55772 -15.22627 -14.81319 -14.65326 -14.40946 -14.25159 -14.02416 -13.82851 -13.70041 -13.57699 -13.20309 -13.17741 -13.04447 -12.90581 -12.74151 -12.65931 -12.51885 -12.24651 -12.06289 -12.00455 -11.97151 -11.84600 -11.67909 -11.56332 -11.41894 -11.23863 -10.80152 -10.70841 -9.80613 -9.67833 -9.43239 -8.89298 -7.77206 -5.21526 0.37431 0.47124 1.39869 1.46375 1.49261 1.55604 1.69697 2.48999 2.56140 2.99113 3.19047 3.28624 3.39004 3.41732 3.62736 3.68301 3.79546 3.88180 4.03266 4.05739 4.13084 4.14318 4.22511 4.30278 4.41958 4.49039 4.51068 4.55171 4.62177 4.65917 4.71603 4.78055 4.79012 4.80504 4.86433 4.90894 4.92033 4.97118 5.08232 5.10418 5.12155 5.13587 5.19008 5.29536 5.45778 5.58802 5.63361 5.67028 5.70764 5.83625 6.10607 6.32319 6.64970 6.99961 7.11552 7.77744 8.41508 9.24096 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002762 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.628453 B =10136.670774 C =10694.742601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.123 4.123 6 C -0.040 4.040 7 C -0.128 4.128 8 C 0.575 3.425 9 O -0.590 6.590 10 N -0.633 5.633 11 C 0.137 3.863 12 C -0.096 4.096 13 C 0.118 3.882 14 C -0.107 4.107 15 C 0.154 3.846 16 N -0.626 5.626 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.063 4.063 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.166 3.834 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.075 0.925 42 H -0.016 1.016 43 H 0.248 0.752 44 H 0.037 0.963 45 H 0.003 0.997 46 H 0.126 0.874 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.139 0.861 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 20.483 17.129 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.140 4.140 6 C -0.041 4.041 7 C -0.131 4.131 8 C 0.366 3.634 9 O -0.471 6.471 10 N -0.366 5.366 11 C 0.015 3.985 12 C -0.098 4.098 13 C -0.005 4.005 14 C -0.146 4.146 15 C 0.029 3.971 16 N -0.352 5.352 17 C -0.371 4.371 18 H 0.094 0.906 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.200 1.200 25 C 0.041 3.959 26 C -0.172 4.172 27 C -0.175 4.175 28 C -0.149 4.149 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.002 0.998 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.145 0.855 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.157 0.843 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.383 19.856 17.513 26.691 hybrid contribution 0.303 -1.702 -0.605 1.832 sum -3.080 18.154 16.908 24.998 Atomic orbital electron populations 1.20831 0.90132 1.03317 1.02876 1.20103 0.97069 0.92747 0.98955 1.21356 0.94804 0.97733 1.00449 1.21446 0.94296 0.98538 0.98316 1.21197 1.01042 0.90981 1.00814 1.18678 0.92729 0.91641 1.01036 1.19993 0.94388 0.92782 1.05940 1.19442 0.78074 0.86494 0.79419 1.90662 1.55029 1.36959 1.64480 1.49715 1.53867 1.28021 1.04996 1.22956 1.03029 0.92872 0.79693 1.21950 0.96080 0.97008 0.94742 1.22922 0.97671 0.95854 0.84028 1.22588 1.00813 0.98576 0.92612 1.21793 0.84052 0.91815 0.99439 1.44910 1.15002 1.60502 1.14771 1.19366 0.95581 1.24157 0.97967 0.90617 1.25580 0.99304 1.02459 0.98246 1.70032 1.23238 1.50433 1.15827 0.85162 0.78389 0.78484 0.77342 1.20998 1.21726 1.20008 1.20784 0.94931 0.93922 0.86273 1.23142 0.99043 1.03367 0.91630 1.23309 0.89444 1.05217 0.99492 1.20786 0.93790 0.97526 1.02766 0.90573 0.89750 0.92311 0.83817 0.83099 0.83762 0.86958 0.88951 0.93095 0.87352 0.88844 0.89948 0.90724 0.99840 0.94250 0.94506 0.97886 0.85539 0.89271 0.88854 0.84287 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.09 -1.58 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -1.75 9.70 22.27 0.22 -1.54 16 4 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 5 C -0.12 -1.86 9.36 22.27 0.21 -1.65 16 6 C -0.04 -0.84 5.48 -19.87 -0.11 -0.95 16 7 C -0.13 -3.02 2.19 -53.68 -0.12 -3.14 16 8 C 0.57 18.42 6.16 87.66 0.54 18.96 16 9 O -0.59 -24.03 17.48 -3.00 -0.05 -24.08 16 10 N -0.63 -18.79 3.70 -859.09 -3.17 -21.96 16 11 C 0.14 3.34 7.82 83.70 0.65 3.99 16 12 C -0.10 -3.08 1.05 -52.56 -0.05 -3.13 16 13 C 0.12 3.72 7.90 83.61 0.66 4.38 16 14 C -0.11 -3.55 6.49 31.58 0.21 -3.34 16 15 C 0.15 7.36 5.90 86.93 0.51 7.87 16 16 N -0.63 -32.24 3.41 -692.92 -2.36 -34.60 16 17 C -0.24 -13.69 10.28 84.03 0.86 -12.82 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 20 N -0.95 -55.95 10.09 21.65 0.22 -55.73 16 21 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.17 6.89 6.79 86.17 0.58 7.47 16 26 C -0.13 -2.74 9.73 30.59 0.30 -2.45 16 27 C -0.14 -2.51 9.57 30.59 0.29 -2.21 16 28 C -0.13 -2.93 8.97 22.27 0.20 -2.73 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.14 1.53 5.95 -2.91 -0.02 1.52 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 37 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 38 H 0.11 2.89 8.04 -2.39 -0.02 2.87 16 39 H 0.09 2.56 7.98 -2.39 -0.02 2.54 16 40 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.07 4.07 5.89 -2.39 -0.01 4.05 16 42 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 45 H 0.00 0.14 7.92 -2.38 -0.02 0.13 16 46 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.15 8.00 -2.39 -0.02 2.13 16 48 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.14 1.63 6.10 -2.38 -0.01 1.62 16 50 H 0.09 2.47 7.35 -2.91 -0.02 2.45 16 Total: -1.00 -74.34 403.09 3.82 -70.52 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.92 Total: 16.18 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.24 Total: 1.83 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -5.32 Total: -112.29 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.34 3.82 -70.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073462898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.218 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds