Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 115.56540 * 2 1 4 4 O 1.21277 * 120.00435 * 258.86840 * 3 2 1 5 5 N 1.34783 * 119.99595 * 78.86757 * 3 2 1 6 6 C 1.47345 * 125.53140 * 4.85436 * 5 3 2 7 7 C 1.55157 * 104.78211 * 156.46521 * 6 5 3 8 8 C 1.54802 * 101.39659 * 37.53908 * 7 6 5 9 9 H 1.08997 * 113.15931 * 85.43826 * 8 7 6 10 10 C 1.53273 * 109.74835 * 212.11794 * 8 7 6 11 11 N 1.46587 * 108.15606 * 95.76075 * 10 8 7 12 12 C 1.36936 * 125.29840 * 177.88913 * 11 10 8 13 13 H 1.07993 * 120.00478 * 350.58274 * 12 11 10 14 14 C 1.38812 * 119.99386 * 170.58411 * 12 11 10 15 15 N 1.31620 * 120.00321 * 350.71593 * 14 12 11 16 16 Si 1.86804 * 120.00043 * 170.72394 * 14 12 11 17 17 H 1.48497 * 109.47521 * 94.92633 * 16 14 12 18 18 H 1.48497 * 109.47233 * 214.92842 * 16 14 12 19 19 H 1.48500 * 109.46691 * 334.92649 * 16 14 12 20 20 C 1.46602 * 109.38946 * 357.88749 * 11 10 8 21 21 C 1.47213 * 125.52944 * 185.15559 * 5 3 2 22 22 H 1.09004 * 112.28465 * 56.22243 * 21 5 3 23 23 C 1.53010 * 117.49786 * 214.31408 * 2 1 3 24 24 C 1.52998 * 117.49908 * 145.69262 * 2 1 3 25 25 H 1.09008 * 117.52226 * 214.96840 * 24 2 1 26 26 C 1.50705 * 117.49897 * 359.97438 * 24 2 1 27 27 C 1.38238 * 119.99716 * 59.73967 * 26 24 2 28 28 C 1.38237 * 119.99848 * 179.78547 * 27 26 24 29 29 C 1.38235 * 119.99695 * 0.44872 * 28 27 26 30 30 C 1.38237 * 120.00394 * 359.80618 * 29 28 27 31 31 C 1.38235 * 120.00047 * 240.01503 * 26 24 2 32 32 H 1.08996 * 109.47525 * 267.32790 * 1 2 3 33 33 H 1.09007 * 109.47436 * 27.32106 * 1 2 3 34 34 H 1.09007 * 109.47326 * 147.32350 * 1 2 3 35 35 H 1.09008 * 110.35491 * 275.41720 * 6 5 3 36 36 H 1.09002 * 110.35382 * 37.70636 * 6 5 3 37 37 H 1.09003 * 111.22558 * 279.45599 * 7 6 5 38 38 H 1.09004 * 110.92014 * 155.49166 * 7 6 5 39 39 H 1.08998 * 109.73154 * 215.44812 * 10 8 7 40 40 H 1.09000 * 109.73519 * 336.09616 * 10 8 7 41 41 H 0.97004 * 119.99942 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.91426 * 258.45191 * 20 11 10 43 43 H 1.08998 * 109.91572 * 137.17041 * 20 11 10 44 44 H 1.08995 * 117.49603 * 145.02125 * 23 2 1 45 45 H 1.08994 * 117.51365 * 359.97438 * 23 2 1 46 46 H 1.08001 * 119.99774 * 359.97438 * 27 26 24 47 47 H 1.07994 * 120.00171 * 180.27543 * 28 27 26 48 48 H 1.08007 * 119.99599 * 179.83426 * 29 28 27 49 49 H 1.07999 * 120.00122 * 180.02562 * 30 29 28 50 50 H 1.07994 * 120.00026 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 8 2.6249 1.8190 -1.0305 5 7 2.2677 2.0646 1.1453 6 6 1.8625 1.5859 2.4787 7 6 2.6851 2.4453 3.4747 8 6 2.6791 3.8225 2.7678 9 1 1.7946 4.4173 2.9954 10 6 3.9836 4.5671 3.0731 11 7 4.9167 4.3256 1.9687 12 6 6.1731 4.8598 1.8631 13 1 6.4909 5.6320 2.5480 14 6 7.0382 4.4088 0.8757 15 7 6.7256 3.3489 0.1607 16 14 8.6463 5.3060 0.5618 17 1 9.7375 4.6477 1.3241 18 1 8.9613 5.2647 -0.8888 19 1 8.5186 6.7190 1.0005 20 6 4.2950 3.4231 0.9949 21 6 2.7778 3.4402 1.2662 22 1 2.2413 4.1380 0.6232 23 6 2.2364 -1.1210 -0.7651 24 6 2.2363 -1.1210 0.7649 25 1 3.1716 -0.8757 1.2682 26 6 1.3719 -2.1404 1.4612 27 6 0.4809 -2.9050 0.7315 28 6 -0.3089 -3.8431 1.3695 29 6 -0.2143 -4.0101 2.7385 30 6 0.6730 -3.2419 3.4689 31 6 1.4659 -2.3068 2.8303 32 1 -0.3634 -0.0479 1.0265 33 1 -0.3634 0.9131 -0.4717 34 1 -0.3634 -0.8651 -0.5549 35 1 0.7946 1.7439 2.6299 36 1 2.1106 0.5308 2.5942 37 1 3.7009 2.0641 3.5794 38 1 2.1883 2.5009 4.4433 39 1 3.7857 5.6353 3.1610 40 1 4.4110 4.1941 4.0039 41 1 7.3300 3.0340 -0.5296 42 1 4.6839 2.4131 1.1238 43 1 4.4951 3.7744 -0.0174 44 1 3.1714 -0.8751 -1.2683 45 1 1.6114 -1.8588 -1.2681 46 1 0.4040 -2.7714 -0.3375 47 1 -1.0018 -4.4435 0.7989 48 1 -0.8332 -4.7413 3.2373 49 1 0.7472 -3.3727 4.5384 50 1 2.1592 -1.7067 3.4008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076346413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 53.841273 kcal Electronic energy + Delta-G solvation = -30621.828663 eV Core-core repulsion = 26808.510057 eV Total energy + Delta-G solvation = -3813.318606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68221 -39.54691 -38.17601 -36.45816 -34.87185 -32.19529 -31.23313 -30.85861 -30.60749 -28.84013 -28.47081 -26.80201 -24.59657 -24.00948 -23.58561 -22.61112 -21.63861 -20.46767 -20.32643 -19.30211 -18.36869 -17.06970 -16.94914 -16.57242 -15.68657 -15.51159 -15.28813 -14.83353 -14.52307 -14.42899 -13.96931 -13.65625 -13.56032 -13.43011 -13.31929 -13.02989 -12.85569 -12.62048 -12.42850 -12.14953 -12.11914 -11.91129 -11.87087 -11.57675 -11.37299 -11.21268 -11.11412 -10.92468 -10.78209 -10.67291 -10.37727 -10.13343 -10.08558 -9.97104 -9.85885 -9.69594 -9.37419 -9.08637 -8.65029 -8.53399 -8.13183 -6.75162 -5.67073 -3.02476 1.12900 1.22795 2.98520 3.20690 3.43000 3.44946 3.48626 3.51318 3.93740 4.34426 4.53614 4.60660 4.65324 4.69236 4.80065 4.83950 4.86270 4.92996 5.07714 5.10108 5.25151 5.30525 5.41101 5.48870 5.56875 5.59322 5.61154 5.66095 5.72723 5.74449 5.82461 5.83629 5.86138 5.88628 5.95681 5.99920 6.06016 6.09793 6.21436 6.31712 6.34012 6.37595 6.48727 6.54105 6.66787 6.70518 6.81943 6.91474 7.55357 7.69075 7.90694 7.99993 8.32843 8.61805 9.25711 9.87715 10.52044 11.43922 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003100 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.597691 B = 9028.745245 C = 9380.413322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.132 4.132 3 C 0.560 3.440 4 O -0.522 6.522 5 N -0.601 5.601 6 C 0.104 3.896 7 C -0.122 4.122 8 C -0.108 4.108 9 H 0.087 0.913 10 C 0.145 3.855 11 N -0.601 5.601 12 C -0.236 4.236 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.910 5.910 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.181 3.819 21 C 0.113 3.887 22 H 0.080 0.920 23 C -0.137 4.137 24 C -0.106 4.106 25 H 0.119 0.881 26 C -0.041 4.041 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.128 4.128 30 C -0.117 4.117 31 C -0.112 4.112 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.253 0.747 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -13.752 6.102 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C 0.347 3.653 4 O -0.397 6.397 5 N -0.335 5.335 6 C -0.020 4.020 7 C -0.160 4.160 8 C -0.128 4.128 9 H 0.105 0.895 10 C 0.018 3.982 11 N -0.327 5.327 12 C -0.365 4.365 13 H 0.094 0.906 14 C -0.202 4.202 15 N -0.556 5.556 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.056 3.944 21 C 0.009 3.991 22 H 0.098 0.902 23 C -0.175 4.175 24 C -0.124 4.124 25 H 0.137 0.863 26 C -0.041 4.041 27 C -0.136 4.136 28 C -0.137 4.137 29 C -0.146 4.146 30 C -0.135 4.135 31 C -0.130 4.130 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.020 -13.569 5.321 22.408 hybrid contribution 0.891 0.379 -0.098 0.973 sum -16.129 -13.190 5.224 21.480 Atomic orbital electron populations 1.21249 0.90051 1.02488 1.02322 1.21510 0.96056 0.89135 1.06844 1.19013 0.78914 0.84855 0.82532 1.90756 1.47007 1.70245 1.31689 1.48443 1.62958 1.15396 1.06688 1.22362 0.98188 0.98939 0.82464 1.22843 1.01175 0.94807 0.97214 1.22850 0.99168 0.96265 0.94487 0.89487 1.20999 0.88373 0.96444 0.92365 1.44151 1.13387 1.55706 1.19497 1.18965 0.88130 1.15144 1.14226 0.90554 1.24861 0.98315 0.97420 0.99556 1.70001 1.37032 1.23675 1.24873 0.86159 0.83434 0.79137 0.77347 1.21659 1.21615 1.20589 1.21263 0.84168 0.94559 0.94437 1.22928 0.98824 0.81577 0.95748 0.90193 1.23271 1.03016 0.98285 0.92879 1.21323 0.99817 0.96793 0.94511 0.86317 1.19083 0.96000 0.95682 0.93377 1.21105 0.96243 0.96144 1.00067 1.21104 0.99460 0.98356 0.94769 1.21132 0.99185 0.99920 0.94326 1.21129 0.96328 0.96183 0.99879 1.21028 0.99626 0.98509 0.93799 0.91704 0.91873 0.91523 0.92027 0.90861 0.89858 0.90459 0.95942 0.95662 0.93684 0.94550 0.92093 0.87324 0.87697 0.85871 0.86231 0.86353 0.86080 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 8.51 37.15 0.32 -0.82 16 2 C -0.13 -1.79 1.80 -155.66 -0.28 -2.07 16 3 C 0.56 10.27 6.78 -10.98 -0.07 10.19 16 4 O -0.52 -12.04 16.99 5.56 0.09 -11.95 16 5 N -0.60 -10.45 2.85 -161.54 -0.46 -10.91 16 6 C 0.10 1.38 6.62 -2.44 -0.02 1.37 16 7 C -0.12 -1.72 6.25 -24.64 -0.15 -1.88 16 8 C -0.11 -1.80 3.91 -88.33 -0.34 -2.15 16 9 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 10 C 0.14 2.96 6.65 -3.85 -0.03 2.93 16 11 N -0.60 -15.65 3.37 -172.22 -0.58 -16.23 16 12 C -0.24 -6.73 10.21 -15.06 -0.15 -6.89 16 13 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 14 C 0.00 -0.12 5.41 -17.43 -0.09 -0.21 16 15 N -0.91 -27.94 10.59 55.49 0.59 -27.35 16 16 Si 0.91 22.67 29.56 -169.99 -5.03 17.64 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.18 4.64 4.43 -3.39 -0.02 4.63 16 21 C 0.11 2.25 3.90 -65.75 -0.26 1.99 16 22 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 23 C -0.14 -1.73 9.13 -26.72 -0.24 -1.97 16 24 C -0.11 -1.29 4.19 -91.77 -0.38 -1.68 16 25 H 0.12 1.62 7.88 -51.92 -0.41 1.21 16 26 C -0.04 -0.43 4.93 -104.62 -0.52 -0.95 16 27 C -0.12 -1.10 7.90 -39.58 -0.31 -1.41 16 28 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 29 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 30 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 31 C -0.11 -1.09 9.74 -39.58 -0.39 -1.48 16 32 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 33 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 34 H 0.07 0.61 6.34 -51.92 -0.33 0.29 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.89 6.07 -51.93 -0.32 0.58 16 37 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 41 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.04 1.04 7.59 -51.93 -0.39 0.65 16 43 H 0.06 1.83 7.21 -51.93 -0.37 1.46 16 44 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 45 H 0.10 1.05 6.07 -51.93 -0.32 0.73 16 46 H 0.12 1.02 5.21 -52.49 -0.27 0.75 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.12 1.12 7.98 -52.49 -0.42 0.70 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -34.29 390.28 -11.46 -45.74 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.82 Total: 1.78 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -4.13 Total: -4.60 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.45 Total: -54.49 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.29 -11.46 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076346413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.586 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds