Wall clock time and date at job start Sat Apr 11 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 115.56540 * 2 1 4 4 O 1.21277 * 120.00435 * 258.86840 * 3 2 1 5 5 N 1.34783 * 119.99595 * 78.86757 * 3 2 1 6 6 C 1.47345 * 125.53140 * 4.85436 * 5 3 2 7 7 C 1.55157 * 104.78211 * 156.46521 * 6 5 3 8 8 C 1.54802 * 101.39659 * 37.53908 * 7 6 5 9 9 H 1.08997 * 113.15931 * 85.43826 * 8 7 6 10 10 C 1.53273 * 109.74835 * 212.11794 * 8 7 6 11 11 N 1.46587 * 108.15606 * 95.76075 * 10 8 7 12 12 C 1.36936 * 125.29840 * 177.88913 * 11 10 8 13 13 H 1.07993 * 120.00478 * 350.58274 * 12 11 10 14 14 C 1.38812 * 119.99386 * 170.58411 * 12 11 10 15 15 N 1.31620 * 120.00321 * 350.71593 * 14 12 11 16 16 Si 1.86804 * 120.00043 * 170.72394 * 14 12 11 17 17 H 1.48497 * 109.47521 * 94.92633 * 16 14 12 18 18 H 1.48497 * 109.47233 * 214.92842 * 16 14 12 19 19 H 1.48500 * 109.46691 * 334.92649 * 16 14 12 20 20 C 1.46602 * 109.38946 * 357.88749 * 11 10 8 21 21 C 1.47213 * 125.52944 * 185.15559 * 5 3 2 22 22 H 1.09004 * 112.28465 * 56.22243 * 21 5 3 23 23 C 1.53010 * 117.49786 * 214.31408 * 2 1 3 24 24 C 1.52998 * 117.49908 * 145.69262 * 2 1 3 25 25 H 1.09008 * 117.52226 * 214.96840 * 24 2 1 26 26 C 1.50705 * 117.49897 * 359.97438 * 24 2 1 27 27 C 1.38238 * 119.99716 * 59.73967 * 26 24 2 28 28 C 1.38237 * 119.99848 * 179.78547 * 27 26 24 29 29 C 1.38235 * 119.99695 * 0.44872 * 28 27 26 30 30 C 1.38237 * 120.00394 * 359.80618 * 29 28 27 31 31 C 1.38235 * 120.00047 * 240.01503 * 26 24 2 32 32 H 1.08996 * 109.47525 * 267.32790 * 1 2 3 33 33 H 1.09007 * 109.47436 * 27.32106 * 1 2 3 34 34 H 1.09007 * 109.47326 * 147.32350 * 1 2 3 35 35 H 1.09008 * 110.35491 * 275.41720 * 6 5 3 36 36 H 1.09002 * 110.35382 * 37.70636 * 6 5 3 37 37 H 1.09003 * 111.22558 * 279.45599 * 7 6 5 38 38 H 1.09004 * 110.92014 * 155.49166 * 7 6 5 39 39 H 1.08998 * 109.73154 * 215.44812 * 10 8 7 40 40 H 1.09000 * 109.73519 * 336.09616 * 10 8 7 41 41 H 0.97004 * 119.99942 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.91426 * 258.45191 * 20 11 10 43 43 H 1.08998 * 109.91572 * 137.17041 * 20 11 10 44 44 H 1.08995 * 117.49603 * 145.02125 * 23 2 1 45 45 H 1.08994 * 117.51365 * 359.97438 * 23 2 1 46 46 H 1.08001 * 119.99774 * 359.97438 * 27 26 24 47 47 H 1.07994 * 120.00171 * 180.27543 * 28 27 26 48 48 H 1.08007 * 119.99599 * 179.83426 * 29 28 27 49 49 H 1.07999 * 120.00122 * 180.02562 * 30 29 28 50 50 H 1.07994 * 120.00026 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 8 2.6249 1.8190 -1.0305 5 7 2.2677 2.0646 1.1453 6 6 1.8625 1.5859 2.4787 7 6 2.6851 2.4453 3.4747 8 6 2.6791 3.8225 2.7678 9 1 1.7946 4.4173 2.9954 10 6 3.9836 4.5671 3.0731 11 7 4.9167 4.3256 1.9687 12 6 6.1731 4.8598 1.8631 13 1 6.4909 5.6320 2.5480 14 6 7.0382 4.4088 0.8757 15 7 6.7256 3.3489 0.1607 16 14 8.6463 5.3060 0.5618 17 1 9.7375 4.6477 1.3241 18 1 8.9613 5.2647 -0.8888 19 1 8.5186 6.7190 1.0005 20 6 4.2950 3.4231 0.9949 21 6 2.7778 3.4402 1.2662 22 1 2.2413 4.1380 0.6232 23 6 2.2364 -1.1210 -0.7651 24 6 2.2363 -1.1210 0.7649 25 1 3.1716 -0.8757 1.2682 26 6 1.3719 -2.1404 1.4612 27 6 0.4809 -2.9050 0.7315 28 6 -0.3089 -3.8431 1.3695 29 6 -0.2143 -4.0101 2.7385 30 6 0.6730 -3.2419 3.4689 31 6 1.4659 -2.3068 2.8303 32 1 -0.3634 -0.0479 1.0265 33 1 -0.3634 0.9131 -0.4717 34 1 -0.3634 -0.8651 -0.5549 35 1 0.7946 1.7439 2.6299 36 1 2.1106 0.5308 2.5942 37 1 3.7009 2.0641 3.5794 38 1 2.1883 2.5009 4.4433 39 1 3.7857 5.6353 3.1610 40 1 4.4110 4.1941 4.0039 41 1 7.3300 3.0340 -0.5296 42 1 4.6839 2.4131 1.1238 43 1 4.4951 3.7744 -0.0174 44 1 3.1714 -0.8751 -1.2683 45 1 1.6114 -1.8588 -1.2681 46 1 0.4040 -2.7714 -0.3375 47 1 -1.0018 -4.4435 0.7989 48 1 -0.8332 -4.7413 3.2373 49 1 0.7472 -3.3727 4.5384 50 1 2.1592 -1.7067 3.4008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076346413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:23 Heat of formation + Delta-G solvation = 34.033568 kcal Electronic energy + Delta-G solvation = -30622.687590 eV Core-core repulsion = 26808.510057 eV Total energy + Delta-G solvation = -3814.177533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92321 -40.64673 -39.44462 -37.63497 -36.65369 -34.08611 -32.30364 -31.87975 -31.55932 -30.45111 -29.53875 -28.43945 -26.57346 -24.99134 -24.77654 -23.46094 -22.74895 -22.19427 -21.31768 -20.75945 -19.72179 -18.89490 -18.02262 -17.77019 -17.19500 -16.89765 -16.47510 -16.13654 -15.68977 -15.58187 -15.27384 -15.17317 -14.82566 -14.55540 -14.28818 -14.24726 -14.08733 -13.80420 -13.58752 -13.57085 -13.48450 -13.30886 -13.11594 -12.89317 -12.84591 -12.79901 -12.63444 -12.20509 -12.12036 -11.89284 -11.84884 -11.75338 -11.58755 -11.52563 -11.40363 -11.08521 -10.79359 -10.72560 -9.72052 -9.64997 -9.41470 -8.91815 -7.90690 -5.28924 0.43974 0.59490 1.39438 1.42957 1.52571 1.57451 1.89350 2.45318 2.53693 3.11012 3.24938 3.27809 3.48858 3.59375 3.61484 3.71457 3.78547 3.90418 3.96040 4.02646 4.21894 4.26107 4.29170 4.32864 4.37394 4.45291 4.53529 4.60141 4.66915 4.70746 4.74428 4.78820 4.83260 4.86651 4.89534 4.93295 5.01459 5.08121 5.15907 5.16898 5.19690 5.23134 5.27562 5.40283 5.46967 5.52197 5.67434 5.71924 5.72435 5.78545 6.14816 6.19235 6.58149 7.01901 7.17546 7.74061 8.36532 9.19049 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003100 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.597691 B = 9028.745245 C = 9380.413322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.132 4.132 3 C 0.548 3.452 4 O -0.586 6.586 5 N -0.601 5.601 6 C 0.103 3.897 7 C -0.114 4.114 8 C -0.090 4.090 9 H 0.133 0.867 10 C 0.136 3.864 11 N -0.623 5.623 12 C -0.246 4.246 13 H 0.088 0.912 14 C -0.070 4.070 15 N -0.948 5.948 16 Si 0.980 3.020 17 H -0.282 1.282 18 H -0.299 1.299 19 H -0.262 1.262 20 C 0.205 3.795 21 C 0.115 3.885 22 H 0.072 0.928 23 C -0.144 4.144 24 C -0.087 4.087 25 H 0.094 0.906 26 C -0.055 4.055 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.127 4.127 30 C -0.121 4.121 31 C -0.123 4.123 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.127 0.873 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.243 0.757 42 H -0.008 1.008 43 H -0.002 1.002 44 H 0.076 0.924 45 H 0.137 0.863 46 H 0.132 0.868 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.139 0.861 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.623 -14.924 9.081 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.338 3.662 4 O -0.466 6.466 5 N -0.333 5.333 6 C -0.018 4.018 7 C -0.152 4.152 8 C -0.109 4.109 9 H 0.151 0.849 10 C 0.011 3.989 11 N -0.350 5.350 12 C -0.375 4.375 13 H 0.106 0.894 14 C -0.263 4.263 15 N -0.597 5.597 16 Si 0.807 3.193 17 H -0.209 1.209 18 H -0.226 1.226 19 H -0.187 1.187 20 C 0.079 3.921 21 C 0.010 3.990 22 H 0.090 0.910 23 C -0.181 4.181 24 C -0.105 4.105 25 H 0.112 0.888 26 C -0.055 4.055 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.145 4.145 30 C -0.139 4.139 31 C -0.141 4.141 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.010 0.990 43 H 0.016 0.984 44 H 0.095 0.905 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.157 0.843 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.235 -14.735 8.387 26.399 hybrid contribution 1.910 0.729 -0.975 2.265 sum -18.325 -14.006 7.412 24.227 Atomic orbital electron populations 1.21260 0.87319 1.03035 1.03587 1.21437 0.97560 0.86329 1.08206 1.19999 0.78036 0.86377 0.81837 1.90717 1.49775 1.72066 1.34071 1.48571 1.62042 1.14393 1.08344 1.22670 1.00134 0.99403 0.79614 1.22854 1.00194 0.92707 0.99440 1.22916 0.98768 0.97777 0.91463 0.84923 1.21288 0.89086 0.97736 0.90778 1.44476 1.13679 1.55354 1.21497 1.19455 0.89196 1.14949 1.13902 0.89438 1.25813 1.02312 0.98407 0.99761 1.70279 1.38138 1.25688 1.25547 0.85049 0.79060 0.78694 0.76458 1.20879 1.22572 1.18654 1.20757 0.88300 0.91698 0.91379 1.22656 0.94362 0.83486 0.98505 0.91023 1.23350 1.02256 0.98816 0.93683 1.21162 0.98969 0.96411 0.93957 0.88752 1.18933 0.96737 0.96058 0.93744 1.21230 0.96040 0.96177 1.00517 1.21400 0.99335 0.97968 0.95171 1.21486 0.98791 0.99754 0.94426 1.21379 0.95937 0.95647 1.00953 1.21136 1.00118 0.99198 0.93603 0.90147 0.92779 0.89323 0.88152 0.89780 0.93128 0.85494 0.94736 0.94711 0.94798 0.98974 0.98388 0.90523 0.84521 0.85072 0.84021 0.84060 0.84278 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 8.51 71.98 0.61 -1.27 16 2 C -0.13 -3.61 1.80 -52.93 -0.10 -3.71 16 3 C 0.55 21.31 6.78 87.66 0.59 21.91 16 4 O -0.59 -29.71 16.99 -3.02 -0.05 -29.76 16 5 N -0.60 -21.37 2.85 -783.37 -2.23 -23.61 16 6 C 0.10 2.51 6.62 86.96 0.58 3.09 16 7 C -0.11 -2.90 6.25 31.95 0.20 -2.70 16 8 C -0.09 -2.81 3.91 -9.31 -0.04 -2.84 16 9 H 0.13 3.05 8.14 -2.39 -0.02 3.04 16 10 C 0.14 5.45 6.65 86.45 0.58 6.02 16 11 N -0.62 -33.79 3.37 -698.78 -2.36 -36.15 16 12 C -0.25 -14.48 10.21 84.03 0.86 -13.62 16 13 H 0.09 4.82 7.85 -2.91 -0.02 4.80 16 14 C -0.07 -4.24 5.41 84.86 0.46 -3.78 16 15 N -0.95 -62.70 10.59 21.65 0.23 -62.47 16 16 Si 0.98 48.46 29.56 68.60 2.03 50.49 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.21 11.34 4.43 86.75 0.38 11.72 16 21 C 0.11 4.71 3.90 46.02 0.18 4.89 16 22 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 23 C -0.14 -3.77 9.13 30.60 0.28 -3.49 16 24 C -0.09 -2.12 4.19 -11.54 -0.05 -2.17 16 25 H 0.09 2.75 7.88 -2.38 -0.02 2.73 16 26 C -0.05 -1.04 4.93 -19.86 -0.10 -1.14 16 27 C -0.12 -1.91 7.90 22.27 0.18 -1.74 16 28 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 29 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 30 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 31 C -0.12 -2.12 9.74 22.27 0.22 -1.91 16 32 H 0.08 1.35 7.95 -2.39 -0.02 1.34 16 33 H 0.05 1.18 8.02 -2.38 -0.02 1.16 16 34 H 0.09 1.37 6.34 -2.38 -0.02 1.36 16 35 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 1.91 6.07 -2.39 -0.01 1.89 16 37 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 38 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.03 1.35 7.74 -2.39 -0.02 1.33 16 41 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 42 H -0.01 -0.48 7.59 -2.39 -0.02 -0.50 16 43 H 0.00 -0.16 7.21 -2.39 -0.02 -0.18 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.14 2.60 6.07 -2.39 -0.01 2.59 16 46 H 0.13 1.77 5.21 -2.91 -0.02 1.76 16 47 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 49 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 50 H 0.12 2.04 7.98 -2.91 -0.02 2.02 16 Total: -1.00 -84.85 390.28 4.05 -80.80 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.93 Total: 15.55 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.50 Total: 5.15 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -4.36 Total: -122.23 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -84.85 4.05 -80.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076346413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.837 kcal (2) G-P(sol) polarization free energy of solvation -84.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds