Wall clock time and date at job start Sat Apr 11 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99763 * 2 1 4 4 C 1.38214 * 120.00272 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99626 * 359.81699 * 4 3 2 6 6 C 1.38213 * 120.00101 * 0.41353 * 5 4 3 7 7 C 1.50699 * 120.00225 * 179.81609 * 6 5 4 8 8 H 1.08993 * 115.55103 * 154.05284 * 7 6 5 9 9 C 1.53073 * 117.49182 * 8.32475 * 7 6 5 10 10 C 1.52992 * 117.49568 * 299.72682 * 7 6 5 11 11 H 1.09005 * 117.50256 * 359.97420 * 10 7 6 12 12 C 1.50706 * 117.49946 * 214.97511 * 10 7 6 13 13 O 1.21280 * 119.99926 * 0.09117 * 12 10 7 14 14 N 1.34771 * 120.00220 * 180.08557 * 12 10 7 15 15 C 1.47414 * 125.58873 * 359.97438 * 14 12 10 16 16 C 1.55832 * 105.35084 * 203.80338 * 15 14 12 17 17 C 1.55175 * 101.29718 * 323.91000 * 16 15 14 18 18 H 1.08999 * 113.25526 * 157.54088 * 17 16 15 19 19 C 1.53752 * 108.30956 * 283.97189 * 17 16 15 20 20 N 1.46596 * 108.10832 * 125.22423 * 19 17 16 21 21 C 1.36938 * 125.30922 * 181.01696 * 20 19 17 22 22 H 1.07995 * 120.00094 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99466 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99754 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47396 * 59.99231 * 25 23 21 27 27 H 1.48493 * 109.47132 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46977 * 299.99537 * 25 23 21 29 29 C 1.46708 * 109.37458 * 1.28474 * 20 19 17 30 30 C 1.46707 * 125.59116 * 180.02562 * 14 12 10 31 31 H 1.08998 * 111.53345 * 56.07445 * 30 14 12 32 32 C 1.38210 * 120.00325 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47125 * 270.02095 * 1 2 3 34 34 H 1.08994 * 109.47587 * 30.02658 * 1 2 3 35 35 H 1.09002 * 109.46897 * 150.02609 * 1 2 3 36 36 H 1.08009 * 119.99889 * 359.97438 * 3 2 1 37 37 H 1.07999 * 120.00290 * 180.02562 * 4 3 2 38 38 H 1.07998 * 119.99866 * 180.23005 * 5 4 3 39 39 H 1.09002 * 117.51610 * 145.03806 * 9 7 6 40 40 H 1.09006 * 117.49427 * 0.02562 * 9 7 6 41 41 H 1.08996 * 110.36745 * 323.25359 * 15 14 12 42 42 H 1.08993 * 110.36722 * 85.47578 * 15 14 12 43 43 H 1.09006 * 112.40072 * 205.41118 * 16 15 14 44 44 H 1.08996 * 109.95821 * 81.35656 * 16 15 14 45 45 H 1.08997 * 109.74702 * 5.55394 * 19 17 16 46 46 H 1.09004 * 109.73678 * 244.89140 * 19 17 16 47 47 H 0.97005 * 119.99894 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.99220 * 101.40685 * 29 20 19 49 49 H 1.09006 * 109.98494 * 222.71429 * 29 20 19 50 50 H 1.07997 * 119.99831 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0049 6 6 3.5807 -1.1968 0.0001 7 6 4.3342 -2.5019 0.0006 8 1 3.8019 -3.3519 0.4273 9 6 5.8503 -2.4424 0.2032 10 6 5.2747 -2.7750 -1.1747 11 1 5.3482 -2.0109 -1.9487 12 6 5.3947 -4.1989 -1.6537 13 8 4.7573 -5.0768 -1.1115 14 7 6.2101 -4.4967 -2.6845 15 6 7.0375 -3.5313 -3.4306 16 6 7.2828 -4.1874 -4.8226 17 6 7.4100 -5.6845 -4.4349 18 1 7.2014 -6.3626 -5.2624 19 6 8.7956 -5.9046 -3.8061 20 7 8.6057 -6.5187 -2.4885 21 6 9.6091 -6.8474 -1.6165 22 1 10.6385 -6.6564 -1.8810 23 6 9.3028 -7.4273 -0.3930 24 7 8.0481 -7.6605 -0.0709 25 14 10.6713 -7.8751 0.7969 26 1 11.4319 -6.6523 1.1596 27 1 10.0852 -8.4746 2.0225 28 1 11.5850 -8.8539 0.1548 29 6 7.1735 -6.7319 -2.2528 30 6 6.4192 -5.8347 -3.2489 31 1 5.4792 -6.2871 -3.5646 32 6 2.1981 -1.1969 0.0005 33 1 -0.3633 0.0004 1.0277 34 1 -0.3634 0.8897 -0.5142 35 1 -0.3633 -0.8902 -0.5134 36 1 1.6581 2.1327 -0.0004 37 1 4.1203 2.1328 0.0010 38 1 5.3517 0.0002 0.0091 39 1 6.3158 -3.2534 0.7634 40 1 6.3020 -1.4593 0.3364 41 1 6.5094 -2.5841 -3.5401 42 1 7.9903 -3.3773 -2.9243 43 1 8.1965 -3.8279 -5.2960 44 1 6.4201 -4.0235 -5.4684 45 1 9.3063 -4.9479 -3.6962 46 1 9.3863 -6.5666 -4.4393 47 1 7.8342 -8.0661 0.7839 48 1 6.9188 -7.7774 -2.4266 49 1 6.9182 -6.4508 -1.2310 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076349501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:28 Heat of formation + Delta-G solvation = 47.798617 kcal Electronic energy + Delta-G solvation = -29805.729695 eV Core-core repulsion = 25992.149059 eV Total energy + Delta-G solvation = -3813.580635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34617 -39.63848 -38.13522 -36.08941 -34.67393 -32.65862 -32.13751 -30.91685 -30.75580 -28.87195 -27.07323 -26.44742 -24.75901 -24.31428 -23.49231 -22.29155 -21.98972 -20.58682 -19.78453 -19.33902 -18.28355 -17.42249 -16.82350 -16.47644 -15.93970 -15.32297 -15.03956 -14.94137 -14.48950 -14.35364 -13.95713 -13.76193 -13.70308 -13.34019 -13.25201 -13.06550 -12.55458 -12.52783 -12.39634 -12.30410 -11.96758 -11.86524 -11.75699 -11.53072 -11.35559 -11.07934 -10.99737 -10.97864 -10.70191 -10.63978 -10.47545 -10.33946 -10.24952 -10.12862 -9.77813 -9.63894 -9.28570 -8.86255 -8.60145 -8.55227 -8.03149 -6.76480 -5.59610 -3.00876 1.17875 1.26592 2.96115 3.33060 3.42493 3.46498 3.48979 3.62902 4.14520 4.45792 4.52115 4.66129 4.73515 4.80575 4.82561 4.89392 4.98632 5.01812 5.11404 5.12890 5.19465 5.30170 5.34161 5.39099 5.51640 5.55561 5.56761 5.63738 5.66347 5.76727 5.79455 5.84486 5.91910 5.92242 5.98267 6.05932 6.10118 6.15928 6.29344 6.35808 6.38158 6.45865 6.55778 6.58067 6.63719 6.70202 6.89007 6.91243 7.52298 7.69054 7.98395 8.09361 8.43951 8.72772 9.27646 9.89232 10.52121 11.44753 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.002904 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.182455 B = 9637.959625 C =10570.650043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.129 4.129 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.041 4.041 7 C -0.091 4.091 8 H 0.127 0.873 9 C -0.141 4.141 10 C -0.167 4.167 11 H 0.119 0.881 12 C 0.557 3.443 13 O -0.532 6.532 14 N -0.593 5.593 15 C 0.105 3.895 16 C -0.124 4.124 17 C -0.111 4.111 18 H 0.094 0.906 19 C 0.143 3.857 20 N -0.599 5.599 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.914 5.914 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.156 3.844 30 C 0.114 3.886 31 H 0.076 0.924 32 C -0.111 4.111 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.106 0.894 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 18.129 -4.989 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.041 4.041 7 C -0.109 4.109 8 H 0.145 0.855 9 C -0.178 4.178 10 C -0.188 4.188 11 H 0.137 0.863 12 C 0.345 3.655 13 O -0.409 6.409 14 N -0.326 5.326 15 C -0.019 4.019 16 C -0.162 4.162 17 C -0.130 4.130 18 H 0.112 0.888 19 C 0.017 3.983 20 N -0.326 5.326 21 C -0.359 4.359 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.031 3.969 30 C 0.011 3.989 31 H 0.094 0.906 32 C -0.129 4.129 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.124 0.876 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.806 17.562 -4.414 21.087 hybrid contribution 0.902 -0.264 0.468 1.050 sum -9.904 17.298 -3.946 20.319 Atomic orbital electron populations 1.20790 0.91251 1.02741 1.02307 1.19897 0.96031 0.93075 0.99618 1.20998 0.94297 0.97355 1.02033 1.21085 0.94260 0.97819 1.00083 1.21086 1.00153 0.91899 1.01270 1.19169 0.93275 0.93070 0.98546 1.21105 0.92130 0.96581 1.01105 0.85512 1.23137 0.94888 1.03632 0.96166 1.22280 1.07041 0.96136 0.93333 0.86331 1.19018 0.78805 0.88835 0.78798 1.90715 1.45703 1.48860 1.55581 1.48084 1.42853 1.09126 1.32580 1.22380 0.95485 0.91916 0.92098 1.22950 1.01870 0.95514 0.95850 1.23049 0.96841 0.95988 0.97125 0.88772 1.21166 0.92991 0.96092 0.88087 1.44174 1.02697 1.71771 1.13909 1.18948 0.86964 1.34355 0.95634 0.90623 1.24822 0.96415 1.01128 0.97982 1.69907 1.15296 1.48200 1.22682 0.86217 0.80855 0.78137 0.80625 1.21238 1.21594 1.21233 1.21685 0.82106 0.93983 0.99153 1.22638 0.97681 0.84073 0.94549 0.90597 1.20909 0.93411 0.97788 1.00759 0.91198 0.91666 0.91450 0.86350 0.86125 0.85819 0.87221 0.87719 0.91459 0.91145 0.89814 0.91366 0.95807 0.96240 0.93643 0.96164 0.87617 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.13 -1.21 9.70 -39.58 -0.38 -1.60 16 4 C -0.11 -1.10 10.05 -39.58 -0.40 -1.49 16 5 C -0.13 -1.36 9.30 -39.58 -0.37 -1.73 16 6 C -0.04 -0.50 5.61 -104.62 -0.59 -1.08 16 7 C -0.09 -1.27 5.56 -91.74 -0.51 -1.78 16 8 H 0.13 1.98 7.67 -51.93 -0.40 1.59 16 9 C -0.14 -1.96 9.57 -26.70 -0.26 -2.21 16 10 C -0.17 -2.47 5.16 -91.78 -0.47 -2.94 16 11 H 0.12 1.49 7.06 -51.93 -0.37 1.12 16 12 C 0.56 10.78 7.28 -10.99 -0.08 10.70 16 13 O -0.53 -12.40 15.99 5.56 0.09 -12.32 16 14 N -0.59 -10.94 3.04 -161.62 -0.49 -11.43 16 15 C 0.10 1.52 6.27 -2.03 -0.01 1.50 16 16 C -0.12 -1.59 6.38 -24.07 -0.15 -1.74 16 17 C -0.11 -1.84 4.19 -87.88 -0.37 -2.21 16 18 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.14 2.90 6.43 -3.60 -0.02 2.87 16 20 N -0.60 -15.47 3.38 -172.02 -0.58 -16.05 16 21 C -0.23 -6.51 10.25 -15.06 -0.15 -6.67 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 24 N -0.91 -27.80 10.17 55.49 0.56 -27.23 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.16 4.00 5.20 -3.50 -0.02 3.99 16 30 C 0.11 2.30 3.64 -66.19 -0.24 2.05 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 C -0.11 -1.28 9.39 -39.58 -0.37 -1.65 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.18 6.01 -52.49 -0.32 0.86 16 39 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 40 H 0.10 1.17 6.17 -51.93 -0.32 0.84 16 41 H 0.07 0.78 6.99 -51.93 -0.36 0.42 16 42 H 0.07 1.12 7.55 -51.93 -0.39 0.73 16 43 H 0.08 0.93 7.97 -51.93 -0.41 0.51 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.02 0.47 6.85 -51.93 -0.36 0.12 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.11 3.14 5.36 -51.93 -0.28 2.86 16 50 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -33.99 393.89 -12.07 -46.06 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.82 Total: 3.80 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.75 Total: -6.27 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.51 Total: -54.72 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.99 -12.07 -46.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076349501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.856 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds