Wall clock time and date at job start Sat Apr 11 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99763 * 2 1 4 4 C 1.38214 * 120.00272 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99626 * 359.81699 * 4 3 2 6 6 C 1.38213 * 120.00101 * 0.41353 * 5 4 3 7 7 C 1.50699 * 120.00225 * 179.81609 * 6 5 4 8 8 H 1.08993 * 115.55103 * 154.05284 * 7 6 5 9 9 C 1.53073 * 117.49182 * 8.32475 * 7 6 5 10 10 C 1.52992 * 117.49568 * 299.72682 * 7 6 5 11 11 H 1.09005 * 117.50256 * 359.97420 * 10 7 6 12 12 C 1.50706 * 117.49946 * 214.97511 * 10 7 6 13 13 O 1.21280 * 119.99926 * 0.09117 * 12 10 7 14 14 N 1.34771 * 120.00220 * 180.08557 * 12 10 7 15 15 C 1.47414 * 125.58873 * 359.97438 * 14 12 10 16 16 C 1.55832 * 105.35084 * 203.80338 * 15 14 12 17 17 C 1.55175 * 101.29718 * 323.91000 * 16 15 14 18 18 H 1.08999 * 113.25526 * 157.54088 * 17 16 15 19 19 C 1.53752 * 108.30956 * 283.97189 * 17 16 15 20 20 N 1.46596 * 108.10832 * 125.22423 * 19 17 16 21 21 C 1.36938 * 125.30922 * 181.01696 * 20 19 17 22 22 H 1.07995 * 120.00094 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99466 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99754 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47396 * 59.99231 * 25 23 21 27 27 H 1.48493 * 109.47132 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46977 * 299.99537 * 25 23 21 29 29 C 1.46708 * 109.37458 * 1.28474 * 20 19 17 30 30 C 1.46707 * 125.59116 * 180.02562 * 14 12 10 31 31 H 1.08998 * 111.53345 * 56.07445 * 30 14 12 32 32 C 1.38210 * 120.00325 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47125 * 270.02095 * 1 2 3 34 34 H 1.08994 * 109.47587 * 30.02658 * 1 2 3 35 35 H 1.09002 * 109.46897 * 150.02609 * 1 2 3 36 36 H 1.08009 * 119.99889 * 359.97438 * 3 2 1 37 37 H 1.07999 * 120.00290 * 180.02562 * 4 3 2 38 38 H 1.07998 * 119.99866 * 180.23005 * 5 4 3 39 39 H 1.09002 * 117.51610 * 145.03806 * 9 7 6 40 40 H 1.09006 * 117.49427 * 0.02562 * 9 7 6 41 41 H 1.08996 * 110.36745 * 323.25359 * 15 14 12 42 42 H 1.08993 * 110.36722 * 85.47578 * 15 14 12 43 43 H 1.09006 * 112.40072 * 205.41118 * 16 15 14 44 44 H 1.08996 * 109.95821 * 81.35656 * 16 15 14 45 45 H 1.08997 * 109.74702 * 5.55394 * 19 17 16 46 46 H 1.09004 * 109.73678 * 244.89140 * 19 17 16 47 47 H 0.97005 * 119.99894 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.99220 * 101.40685 * 29 20 19 49 49 H 1.09006 * 109.98494 * 222.71429 * 29 20 19 50 50 H 1.07997 * 119.99831 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0049 6 6 3.5807 -1.1968 0.0001 7 6 4.3342 -2.5019 0.0006 8 1 3.8019 -3.3519 0.4273 9 6 5.8503 -2.4424 0.2032 10 6 5.2747 -2.7750 -1.1747 11 1 5.3482 -2.0109 -1.9487 12 6 5.3947 -4.1989 -1.6537 13 8 4.7573 -5.0768 -1.1115 14 7 6.2101 -4.4967 -2.6845 15 6 7.0375 -3.5313 -3.4306 16 6 7.2828 -4.1874 -4.8226 17 6 7.4100 -5.6845 -4.4349 18 1 7.2014 -6.3626 -5.2624 19 6 8.7956 -5.9046 -3.8061 20 7 8.6057 -6.5187 -2.4885 21 6 9.6091 -6.8474 -1.6165 22 1 10.6385 -6.6564 -1.8810 23 6 9.3028 -7.4273 -0.3930 24 7 8.0481 -7.6605 -0.0709 25 14 10.6713 -7.8751 0.7969 26 1 11.4319 -6.6523 1.1596 27 1 10.0852 -8.4746 2.0225 28 1 11.5850 -8.8539 0.1548 29 6 7.1735 -6.7319 -2.2528 30 6 6.4192 -5.8347 -3.2489 31 1 5.4792 -6.2871 -3.5646 32 6 2.1981 -1.1969 0.0005 33 1 -0.3633 0.0004 1.0277 34 1 -0.3634 0.8897 -0.5142 35 1 -0.3633 -0.8902 -0.5134 36 1 1.6581 2.1327 -0.0004 37 1 4.1203 2.1328 0.0010 38 1 5.3517 0.0002 0.0091 39 1 6.3158 -3.2534 0.7634 40 1 6.3020 -1.4593 0.3364 41 1 6.5094 -2.5841 -3.5401 42 1 7.9903 -3.3773 -2.9243 43 1 8.1965 -3.8279 -5.2960 44 1 6.4201 -4.0235 -5.4684 45 1 9.3063 -4.9479 -3.6962 46 1 9.3863 -6.5666 -4.4393 47 1 7.8342 -8.0661 0.7839 48 1 6.9188 -7.7774 -2.4266 49 1 6.9182 -6.4508 -1.2310 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076349501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:27 Heat of formation + Delta-G solvation = 28.834916 kcal Electronic energy + Delta-G solvation = -29806.552022 eV Core-core repulsion = 25992.149059 eV Total energy + Delta-G solvation = -3814.402963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71258 -40.67916 -39.48748 -37.34457 -36.47517 -33.97972 -33.36939 -32.39540 -31.76850 -30.63687 -28.10645 -27.71463 -26.64543 -25.65536 -24.52805 -23.44183 -22.97212 -22.34622 -20.98766 -20.56289 -19.72418 -18.98090 -18.46085 -17.54919 -17.27694 -16.86903 -16.41001 -16.02443 -15.91141 -15.62017 -15.52425 -14.81765 -14.74667 -14.61761 -14.54896 -14.11676 -14.02068 -13.86871 -13.69633 -13.31233 -13.19879 -13.03699 -12.99832 -12.95875 -12.81047 -12.78656 -12.43320 -12.22220 -12.16755 -11.92813 -11.84525 -11.82664 -11.64516 -11.55733 -11.43956 -11.38332 -10.87307 -10.69771 -9.65581 -9.58022 -9.40762 -8.88011 -7.79474 -5.23331 0.37012 0.49445 1.40636 1.44865 1.51690 1.52344 2.00756 2.46695 2.66446 3.06921 3.31349 3.33095 3.53557 3.60610 3.69249 3.75602 3.80640 3.94384 3.98714 4.02685 4.08973 4.16387 4.24852 4.26294 4.48499 4.51706 4.51955 4.54278 4.63961 4.67775 4.74447 4.83435 4.83793 4.87340 4.90843 4.97332 5.01772 5.03823 5.13831 5.15912 5.17083 5.29684 5.32777 5.35922 5.45678 5.58221 5.59932 5.70050 5.73772 5.86450 6.14052 6.27684 6.64157 7.07207 7.23035 7.79104 8.40516 9.22815 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.002904 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.182455 B = 9637.959625 C =10570.650043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.113 4.113 5 C -0.131 4.131 6 C -0.055 4.055 7 C -0.084 4.084 8 H 0.095 0.905 9 C -0.135 4.135 10 C -0.162 4.162 11 H 0.154 0.846 12 C 0.543 3.457 13 O -0.589 6.589 14 N -0.595 5.595 15 C 0.096 3.904 16 C -0.104 4.104 17 C -0.098 4.098 18 H 0.118 0.882 19 C 0.136 3.864 20 N -0.619 5.619 21 C -0.239 4.239 22 H 0.087 0.913 23 C -0.071 4.071 24 N -0.949 5.949 25 Si 0.980 3.020 26 H -0.273 1.273 27 H -0.300 1.300 28 H -0.274 1.274 29 C 0.167 3.833 30 C 0.115 3.885 31 H 0.073 0.927 32 C -0.132 4.132 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.241 0.759 48 H -0.025 1.025 49 H 0.058 0.942 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 22.432 -7.255 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.149 4.149 6 C -0.055 4.055 7 C -0.103 4.103 8 H 0.113 0.887 9 C -0.172 4.172 10 C -0.183 4.183 11 H 0.171 0.829 12 C 0.333 3.667 13 O -0.470 6.470 14 N -0.327 5.327 15 C -0.025 4.025 16 C -0.142 4.142 17 C -0.117 4.117 18 H 0.136 0.864 19 C 0.011 3.989 20 N -0.345 5.345 21 C -0.368 4.368 22 H 0.105 0.895 23 C -0.264 4.264 24 N -0.598 5.598 25 Si 0.807 3.193 26 H -0.198 1.198 27 H -0.227 1.227 28 H -0.200 1.200 29 C 0.040 3.960 30 C 0.010 3.990 31 H 0.091 0.909 32 C -0.150 4.150 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.050 0.950 48 H -0.007 1.007 49 H 0.076 0.924 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.897 21.910 -6.745 24.970 hybrid contribution 0.617 -1.627 1.174 2.099 sum -9.280 20.283 -5.572 22.990 Atomic orbital electron populations 1.20836 0.89698 1.03511 1.02995 1.20188 0.97335 0.92763 0.98967 1.21377 0.94630 0.97995 1.00656 1.21439 0.94524 0.98387 0.98754 1.21254 1.00916 0.91591 1.01093 1.19055 0.93398 0.92490 1.00592 1.20946 0.92098 0.96927 1.00334 0.88708 1.23149 0.94985 1.04097 0.94989 1.22269 1.07918 0.93745 0.94333 0.82901 1.19935 0.78092 0.90332 0.78372 1.90680 1.48046 1.50978 1.57315 1.48231 1.42700 1.09231 1.32538 1.22706 0.94672 0.92789 0.92378 1.23000 1.04708 0.91372 0.95134 1.23071 0.92847 0.99936 0.95878 0.86368 1.21454 0.95625 0.96173 0.85651 1.44453 1.02182 1.71920 1.15949 1.19422 0.88094 1.33223 0.96053 0.89514 1.25739 0.98603 1.01938 1.00098 1.70246 1.17608 1.49561 1.22421 0.85135 0.78056 0.78240 0.77822 1.19839 1.22658 1.20000 1.21284 0.83393 0.92811 0.98483 1.22398 0.97678 0.84371 0.94513 0.90895 1.21007 0.93565 0.98396 1.02025 0.90493 0.89911 0.91693 0.83741 0.83343 0.84445 0.90758 0.84028 0.87493 0.92514 0.86718 0.88452 0.94234 0.95629 0.94961 1.00727 0.92382 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.72 5.88 -19.87 -0.12 -1.83 16 3 C -0.13 -2.01 9.70 22.27 0.22 -1.80 16 4 C -0.11 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.49 9.30 22.27 0.21 -2.28 16 6 C -0.06 -1.32 5.61 -19.87 -0.11 -1.44 16 7 C -0.08 -2.46 5.56 -11.52 -0.06 -2.52 16 8 H 0.09 3.34 7.67 -2.39 -0.02 3.32 16 9 C -0.14 -3.82 9.57 30.62 0.29 -3.52 16 10 C -0.16 -4.78 5.16 -11.54 -0.06 -4.84 16 11 H 0.15 3.40 7.06 -2.38 -0.02 3.38 16 12 C 0.54 21.94 7.28 87.66 0.64 22.57 16 13 O -0.59 -30.03 15.99 -3.03 -0.05 -30.08 16 14 N -0.60 -21.98 3.04 -783.65 -2.38 -24.36 16 15 C 0.10 2.49 6.27 87.18 0.55 3.03 16 16 C -0.10 -2.18 6.38 32.32 0.21 -1.97 16 17 C -0.10 -3.04 4.19 -9.02 -0.04 -3.08 16 18 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 19 C 0.14 5.31 6.43 86.61 0.56 5.87 16 20 N -0.62 -32.82 3.38 -698.16 -2.36 -35.18 16 21 C -0.24 -13.79 10.25 84.03 0.86 -12.93 16 22 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 23 C -0.07 -4.27 5.48 84.86 0.47 -3.80 16 24 N -0.95 -61.84 10.17 21.65 0.22 -61.62 16 25 Si 0.98 47.84 29.55 68.60 2.03 49.87 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 29 C 0.17 9.12 5.20 86.62 0.45 9.57 16 30 C 0.12 4.73 3.64 46.01 0.17 4.89 16 31 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 32 C -0.13 -3.07 9.39 22.27 0.21 -2.86 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.81 8.09 -2.39 -0.02 0.80 16 35 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.14 2.14 6.01 -2.91 -0.02 2.12 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.14 2.88 6.17 -2.38 -0.01 2.87 16 41 H 0.11 1.96 6.99 -2.39 -0.02 1.94 16 42 H 0.06 1.65 7.55 -2.39 -0.02 1.63 16 43 H 0.11 1.81 7.97 -2.38 -0.02 1.79 16 44 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.45 6.85 -2.39 -0.02 1.43 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.24 15.53 8.31 -92.70 -0.77 14.76 16 48 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 49 H 0.06 3.75 5.36 -2.38 -0.01 3.74 16 50 H 0.11 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -83.18 393.89 3.76 -79.42 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.93 Total: 21.25 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.36 Total: 0.70 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.52 Total: -121.15 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -83.18 3.76 -79.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076349501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.254 kcal (2) G-P(sol) polarization free energy of solvation -83.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds