Wall clock time and date at job start Sat Apr 11 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 120.00206 * 2 1 4 4 C 1.38210 * 119.99856 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99732 * 359.81146 * 5 4 3 7 7 C 1.38213 * 119.99591 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.00294 * 359.97438 * 7 2 1 9 9 H 1.09004 * 115.55751 * 334.31361 * 8 7 2 10 10 C 1.53003 * 117.50176 * 188.62606 * 8 7 2 11 11 C 1.52995 * 117.49835 * 120.00206 * 8 7 2 12 12 H 1.08995 * 117.51880 * 0.02562 * 11 8 7 13 13 C 1.50703 * 117.49828 * 214.97796 * 11 8 7 14 14 O 1.21285 * 120.00050 * 359.97438 * 13 11 8 15 15 N 1.34771 * 120.00010 * 179.97438 * 13 11 8 16 16 C 1.47397 * 125.59312 * 0.02562 * 15 13 11 17 17 C 1.54853 * 104.81671 * 204.60394 * 16 15 13 18 18 C 1.55121 * 101.77287 * 322.81131 * 17 16 15 19 19 H 1.09003 * 113.46686 * 158.34670 * 18 17 16 20 20 C 1.54238 * 108.08945 * 286.25367 * 18 17 16 21 21 N 1.46704 * 106.72950 * 136.07685 * 20 18 17 22 22 C 1.36933 * 125.32040 * 161.69133 * 21 20 18 23 23 H 1.08002 * 120.00353 * 349.83994 * 22 21 20 24 24 C 1.38819 * 119.99900 * 169.83835 * 22 21 20 25 25 N 1.31622 * 119.99525 * 164.32067 * 24 22 21 26 26 Si 1.86793 * 119.99836 * 344.04719 * 24 22 21 27 27 H 1.48506 * 109.46864 * 185.82728 * 26 24 22 28 28 H 1.48495 * 109.47346 * 305.82550 * 26 24 22 29 29 H 1.48505 * 109.47347 * 65.83165 * 26 24 22 30 30 C 1.46638 * 109.35701 * 341.42877 * 21 20 18 31 31 C 1.46737 * 125.59025 * 180.02562 * 15 13 11 32 32 H 1.09004 * 111.83873 * 55.82313 * 31 15 13 33 33 H 1.09008 * 109.46742 * 269.97700 * 1 2 3 34 34 H 1.08998 * 109.47263 * 29.97163 * 1 2 3 35 35 H 1.08993 * 109.47379 * 149.97614 * 1 2 3 36 36 H 1.07998 * 119.99802 * 359.97438 * 3 2 1 37 37 H 1.08002 * 120.00287 * 180.02562 * 4 3 2 38 38 H 1.07996 * 120.00779 * 180.02562 * 5 4 3 39 39 H 1.07999 * 119.99935 * 180.22662 * 6 5 4 40 40 H 1.08997 * 117.50045 * 145.01601 * 10 8 7 41 41 H 1.09003 * 117.51417 * 359.97438 * 10 8 7 42 42 H 1.08999 * 110.37252 * 85.76811 * 16 15 13 43 43 H 1.09008 * 110.36874 * 323.43721 * 16 15 13 44 44 H 1.08997 * 110.97148 * 204.68632 * 17 16 15 45 45 H 1.09002 * 110.99842 * 80.94210 * 17 16 15 46 46 H 1.09001 * 110.14304 * 16.70778 * 20 18 17 47 47 H 1.08991 * 109.93195 * 255.33302 * 20 18 17 48 48 H 0.96995 * 120.00065 * 354.77666 * 25 24 22 49 49 H 1.08996 * 109.75574 * 121.18554 * 30 21 20 50 50 H 1.08997 * 109.75536 * 241.88631 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0039 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4420 -2.4663 0.4261 10 6 2.2533 -3.7849 0.2024 11 6 1.6785 -3.4529 -1.1761 12 1 2.3777 -3.1350 -1.9495 13 6 0.5054 -4.2685 -1.6556 14 8 -0.5732 -4.1570 -1.1123 15 7 0.6549 -5.1217 -2.6880 16 6 1.9043 -5.3543 -3.4347 17 6 1.4467 -5.8681 -4.8220 18 6 0.2232 -6.7450 -4.4470 19 1 -0.4680 -6.9026 -5.2750 20 6 0.7453 -8.0435 -3.7989 21 7 -0.0981 -8.2988 -2.6260 22 6 -0.2149 -9.5014 -1.9815 23 1 0.2066 -10.3931 -2.4215 24 6 -0.8752 -9.5743 -0.7626 25 7 -1.2604 -10.7415 -0.2917 26 14 -1.2100 -8.0169 0.2128 27 1 -1.7949 -8.3741 1.5303 28 1 0.0620 -7.2792 0.4197 29 1 -2.1636 -7.1592 -0.5358 30 6 -0.7916 -7.0634 -2.2479 31 6 -0.3995 -5.9715 -3.2532 32 1 -1.2663 -5.3888 -3.5649 33 1 -0.3633 -0.0004 1.0278 34 1 -0.3634 0.8902 -0.5134 35 1 -0.3634 -0.8897 -0.5142 36 1 1.6583 2.1326 -0.0004 37 1 4.1205 2.1325 0.0010 38 1 5.3517 -0.0002 0.0014 39 1 4.1206 -2.1324 0.0076 40 1 1.7830 -4.5931 0.7626 41 1 3.3305 -3.6852 0.3355 42 1 2.5117 -6.1074 -2.9327 43 1 2.4623 -4.4239 -3.5399 44 1 2.2262 -6.4671 -5.2927 45 1 1.1505 -5.0407 -5.4668 46 1 1.7835 -7.9184 -3.4912 47 1 0.6626 -8.8702 -4.5043 48 1 -1.1514 -11.5413 -0.8294 49 1 -1.8696 -7.2220 -2.2779 50 1 -0.4911 -6.7648 -1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076351307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:31 Heat of formation + Delta-G solvation = 58.091783 kcal Electronic energy + Delta-G solvation = -30232.487527 eV Core-core repulsion = 26419.353237 eV Total energy + Delta-G solvation = -3813.134290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72893 -39.93645 -38.38532 -36.20676 -35.08691 -33.04116 -32.33722 -31.41151 -30.79716 -29.15372 -27.20416 -27.02793 -24.75402 -24.31177 -24.05989 -22.18938 -21.60882 -20.95190 -20.34537 -19.70484 -18.75397 -17.76095 -17.28255 -16.60277 -16.20070 -15.59843 -15.30742 -15.10754 -14.90008 -14.51304 -14.19050 -13.97546 -13.89462 -13.62779 -13.29652 -13.23956 -12.96835 -12.84040 -12.46056 -12.41456 -12.32562 -12.09160 -11.96758 -11.84288 -11.59142 -11.36187 -11.11068 -11.08762 -10.88059 -10.86372 -10.74918 -10.54136 -10.37204 -10.16210 -9.62802 -9.33783 -8.98272 -8.92816 -8.68786 -8.65845 -8.37346 -6.99995 -6.28846 -3.20231 1.07365 1.16656 2.63194 3.02202 3.45726 3.55319 3.61507 3.78147 3.94273 4.27175 4.50554 4.57154 4.59214 4.66420 4.66839 4.72846 4.79235 4.81451 4.90495 4.98233 5.05764 5.12616 5.13410 5.31939 5.34347 5.42159 5.44634 5.48465 5.51092 5.54143 5.58611 5.65659 5.69141 5.79551 5.82511 5.89107 5.94246 5.95181 6.02502 6.02685 6.07151 6.28321 6.28842 6.31601 6.46220 6.48834 6.63343 6.68215 6.78948 6.79130 7.68319 7.72940 8.34044 8.36984 9.06336 9.59375 10.23828 11.21810 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003237 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.597319 B = 8647.102239 C = 9445.872982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.050 4.050 8 C -0.087 4.087 9 H 0.130 0.870 10 C -0.144 4.144 11 C -0.170 4.170 12 H 0.123 0.877 13 C 0.556 3.444 14 O -0.535 6.535 15 N -0.602 5.602 16 C 0.101 3.899 17 C -0.124 4.124 18 C -0.109 4.109 19 H 0.103 0.897 20 C 0.143 3.857 21 N -0.609 5.609 22 C -0.323 4.323 23 H 0.079 0.921 24 C -0.018 4.018 25 N -0.927 5.927 26 Si 1.068 2.932 27 H -0.303 1.303 28 H -0.302 1.302 29 H -0.283 1.283 30 C 0.108 3.892 31 C 0.131 3.869 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.041 0.959 48 H 0.262 0.738 49 H 0.050 0.950 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.253 23.332 -5.472 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.050 4.050 8 C -0.106 4.106 9 H 0.147 0.853 10 C -0.181 4.181 11 C -0.191 4.191 12 H 0.141 0.859 13 C 0.345 3.655 14 O -0.412 6.412 15 N -0.336 5.336 16 C -0.022 4.022 17 C -0.163 4.163 18 C -0.129 4.129 19 H 0.121 0.879 20 C 0.017 3.983 21 N -0.337 5.337 22 C -0.450 4.450 23 H 0.097 0.903 24 C -0.218 4.218 25 N -0.569 5.569 26 Si 0.902 3.098 27 H -0.231 1.231 28 H -0.231 1.231 29 H -0.210 1.210 30 C -0.018 4.018 31 C 0.027 3.973 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.029 23.894 -3.652 26.169 hybrid contribution 0.890 -0.594 -1.522 1.860 sum 10.919 23.300 -5.174 26.247 Atomic orbital electron populations 1.20887 0.90979 1.03317 1.02656 1.19769 0.96293 0.92295 0.98931 1.21020 0.94264 0.97354 1.01208 1.21119 0.94305 0.98021 1.00561 1.21085 0.99773 0.92416 1.00997 1.21081 0.93559 0.98392 1.00340 1.19012 0.93006 0.92719 1.00312 1.21117 1.01052 0.87826 1.00574 0.85267 1.23170 1.00308 0.98802 0.95827 1.22285 1.00162 1.03127 0.93567 0.85905 1.19195 0.88743 0.78914 0.78681 1.90710 1.27696 1.66960 1.55871 1.48289 1.11916 1.40649 1.32720 1.22372 0.87058 1.00675 0.92080 1.22776 0.98192 0.99430 0.95856 1.23229 0.96876 0.96038 0.96723 0.87864 1.21356 0.93831 0.93515 0.89628 1.44572 1.49778 1.06920 1.32423 1.20133 1.36761 0.84209 1.03906 0.90303 1.25790 0.97234 1.03478 0.95280 1.70898 1.46716 0.98755 1.40496 0.83866 0.76181 0.74060 0.75676 1.23102 1.23096 1.21038 1.22097 0.96924 0.86304 0.96445 1.22205 0.90456 0.90919 0.93710 0.89423 0.90958 0.91640 0.90539 0.86085 0.86225 0.86128 0.85791 0.87413 0.87363 0.90754 0.90855 0.89585 0.90789 0.95782 0.94063 0.92853 0.93258 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.33 36.01 0.34 -0.85 16 2 C -0.07 -0.77 5.88 -104.63 -0.62 -1.38 16 3 C -0.12 -1.10 9.70 -39.59 -0.38 -1.48 16 4 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 6 C -0.12 -1.12 9.30 -39.58 -0.37 -1.49 16 7 C -0.05 -0.56 5.61 -104.62 -0.59 -1.14 16 8 C -0.09 -1.08 4.66 -91.77 -0.43 -1.51 16 9 H 0.13 1.79 6.43 -51.93 -0.33 1.46 16 10 C -0.14 -1.77 9.56 -26.73 -0.26 -2.02 16 11 C -0.17 -2.22 5.17 -91.77 -0.47 -2.69 16 12 H 0.12 1.32 7.05 -51.93 -0.37 0.95 16 13 C 0.56 9.60 7.18 -10.99 -0.08 9.52 16 14 O -0.54 -11.16 16.13 5.55 0.09 -11.08 16 15 N -0.60 -9.91 2.98 -162.40 -0.48 -10.40 16 16 C 0.10 1.26 6.22 -2.57 -0.02 1.25 16 17 C -0.12 -1.38 6.35 -24.63 -0.16 -1.54 16 18 C -0.11 -1.65 4.35 -87.64 -0.38 -2.03 16 19 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 20 C 0.14 2.75 6.44 -3.28 -0.02 2.73 16 21 N -0.61 -15.22 3.31 -171.89 -0.57 -15.79 16 22 C -0.32 -9.46 10.52 -15.06 -0.16 -9.62 16 23 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 24 C -0.02 -0.56 5.49 -17.43 -0.10 -0.66 16 25 N -0.93 -30.01 13.70 55.49 0.76 -29.25 16 26 Si 1.07 29.40 24.51 -169.99 -4.17 25.23 16 27 H -0.30 -8.43 7.11 56.52 0.40 -8.03 16 28 H -0.30 -8.18 6.86 56.52 0.39 -7.80 16 29 H -0.28 -7.50 5.41 56.52 0.31 -7.19 16 30 C 0.11 2.54 4.16 -3.70 -0.02 2.52 16 31 C 0.13 2.37 3.60 -66.33 -0.24 2.13 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.08 0.86 6.65 -51.93 -0.35 0.51 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 1.03 6.02 -52.49 -0.32 0.71 16 40 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.11 1.04 6.17 -51.93 -0.32 0.71 16 42 H 0.07 1.00 7.16 -51.93 -0.37 0.63 16 43 H 0.07 0.70 6.98 -51.92 -0.36 0.34 16 44 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.02 0.46 6.51 -51.93 -0.34 0.12 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 49 H 0.05 1.25 6.72 -51.93 -0.35 0.90 16 50 H 0.04 1.03 3.02 -51.93 -0.16 0.87 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -35.96 382.32 -10.93 -46.90 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.59 Total: -0.20 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -4.73 Total: -11.17 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.29 Total: -55.44 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 29.40 SS G_CDS: -4.17 Total: 25.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.96 -10.93 -46.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076351307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.988 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds