Wall clock time and date at job start Sat Apr 11 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 120.00206 * 2 1 4 4 C 1.38210 * 119.99856 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99732 * 359.81146 * 5 4 3 7 7 C 1.38213 * 119.99591 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.00294 * 359.97438 * 7 2 1 9 9 H 1.09004 * 115.55751 * 334.31361 * 8 7 2 10 10 C 1.53003 * 117.50176 * 188.62606 * 8 7 2 11 11 C 1.52995 * 117.49835 * 120.00206 * 8 7 2 12 12 H 1.08995 * 117.51880 * 0.02562 * 11 8 7 13 13 C 1.50703 * 117.49828 * 214.97796 * 11 8 7 14 14 O 1.21285 * 120.00050 * 359.97438 * 13 11 8 15 15 N 1.34771 * 120.00010 * 179.97438 * 13 11 8 16 16 C 1.47397 * 125.59312 * 0.02562 * 15 13 11 17 17 C 1.54853 * 104.81671 * 204.60394 * 16 15 13 18 18 C 1.55121 * 101.77287 * 322.81131 * 17 16 15 19 19 H 1.09003 * 113.46686 * 158.34670 * 18 17 16 20 20 C 1.54238 * 108.08945 * 286.25367 * 18 17 16 21 21 N 1.46704 * 106.72950 * 136.07685 * 20 18 17 22 22 C 1.36933 * 125.32040 * 161.69133 * 21 20 18 23 23 H 1.08002 * 120.00353 * 349.83994 * 22 21 20 24 24 C 1.38819 * 119.99900 * 169.83835 * 22 21 20 25 25 N 1.31622 * 119.99525 * 164.32067 * 24 22 21 26 26 Si 1.86793 * 119.99836 * 344.04719 * 24 22 21 27 27 H 1.48506 * 109.46864 * 185.82728 * 26 24 22 28 28 H 1.48495 * 109.47346 * 305.82550 * 26 24 22 29 29 H 1.48505 * 109.47347 * 65.83165 * 26 24 22 30 30 C 1.46638 * 109.35701 * 341.42877 * 21 20 18 31 31 C 1.46737 * 125.59025 * 180.02562 * 15 13 11 32 32 H 1.09004 * 111.83873 * 55.82313 * 31 15 13 33 33 H 1.09008 * 109.46742 * 269.97700 * 1 2 3 34 34 H 1.08998 * 109.47263 * 29.97163 * 1 2 3 35 35 H 1.08993 * 109.47379 * 149.97614 * 1 2 3 36 36 H 1.07998 * 119.99802 * 359.97438 * 3 2 1 37 37 H 1.08002 * 120.00287 * 180.02562 * 4 3 2 38 38 H 1.07996 * 120.00779 * 180.02562 * 5 4 3 39 39 H 1.07999 * 119.99935 * 180.22662 * 6 5 4 40 40 H 1.08997 * 117.50045 * 145.01601 * 10 8 7 41 41 H 1.09003 * 117.51417 * 359.97438 * 10 8 7 42 42 H 1.08999 * 110.37252 * 85.76811 * 16 15 13 43 43 H 1.09008 * 110.36874 * 323.43721 * 16 15 13 44 44 H 1.08997 * 110.97148 * 204.68632 * 17 16 15 45 45 H 1.09002 * 110.99842 * 80.94210 * 17 16 15 46 46 H 1.09001 * 110.14304 * 16.70778 * 20 18 17 47 47 H 1.08991 * 109.93195 * 255.33302 * 20 18 17 48 48 H 0.96995 * 120.00065 * 354.77666 * 25 24 22 49 49 H 1.08996 * 109.75574 * 121.18554 * 30 21 20 50 50 H 1.08997 * 109.75536 * 241.88631 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0039 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4420 -2.4663 0.4261 10 6 2.2533 -3.7849 0.2024 11 6 1.6785 -3.4529 -1.1761 12 1 2.3777 -3.1350 -1.9495 13 6 0.5054 -4.2685 -1.6556 14 8 -0.5732 -4.1570 -1.1123 15 7 0.6549 -5.1217 -2.6880 16 6 1.9043 -5.3543 -3.4347 17 6 1.4467 -5.8681 -4.8220 18 6 0.2232 -6.7450 -4.4470 19 1 -0.4680 -6.9026 -5.2750 20 6 0.7453 -8.0435 -3.7989 21 7 -0.0981 -8.2988 -2.6260 22 6 -0.2149 -9.5014 -1.9815 23 1 0.2066 -10.3931 -2.4215 24 6 -0.8752 -9.5743 -0.7626 25 7 -1.2604 -10.7415 -0.2917 26 14 -1.2100 -8.0169 0.2128 27 1 -1.7949 -8.3741 1.5303 28 1 0.0620 -7.2792 0.4197 29 1 -2.1636 -7.1592 -0.5358 30 6 -0.7916 -7.0634 -2.2479 31 6 -0.3995 -5.9715 -3.2532 32 1 -1.2663 -5.3888 -3.5649 33 1 -0.3633 -0.0004 1.0278 34 1 -0.3634 0.8902 -0.5134 35 1 -0.3634 -0.8897 -0.5142 36 1 1.6583 2.1326 -0.0004 37 1 4.1205 2.1325 0.0010 38 1 5.3517 -0.0002 0.0014 39 1 4.1206 -2.1324 0.0076 40 1 1.7830 -4.5931 0.7626 41 1 3.3305 -3.6852 0.3355 42 1 2.5117 -6.1074 -2.9327 43 1 2.4623 -4.4239 -3.5399 44 1 2.2262 -6.4671 -5.2927 45 1 1.1505 -5.0407 -5.4668 46 1 1.7835 -7.9184 -3.4912 47 1 0.6626 -8.8702 -4.5043 48 1 -1.1514 -11.5413 -0.8294 49 1 -1.8696 -7.2220 -2.2779 50 1 -0.4911 -6.7648 -1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076351307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:30 Heat of formation + Delta-G solvation = 36.032256 kcal Electronic energy + Delta-G solvation = -30233.444100 eV Core-core repulsion = 26419.353237 eV Total energy + Delta-G solvation = -3814.090863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96353 -40.85895 -39.59920 -37.27930 -36.79483 -34.28245 -33.72622 -32.93625 -31.58097 -30.76615 -28.62833 -27.80421 -26.28795 -25.76719 -24.89721 -23.34938 -22.79671 -22.32567 -21.29989 -20.96509 -20.04424 -19.57589 -18.70553 -17.62126 -17.28354 -17.16532 -16.51014 -16.23766 -15.89809 -15.76407 -15.63142 -15.25285 -14.95671 -14.81105 -14.77185 -14.70676 -14.16864 -13.93129 -13.75755 -13.56596 -13.30072 -13.19541 -13.09444 -13.02166 -12.94389 -12.85342 -12.45942 -12.17770 -12.12900 -12.04031 -11.90108 -11.65489 -11.59887 -11.54571 -11.43962 -11.10630 -10.95450 -10.86702 -9.75622 -9.65858 -9.39424 -9.15533 -8.71738 -5.53957 0.36364 0.50008 1.29441 1.33377 1.37812 1.52536 1.84835 2.36124 2.63402 3.01191 3.04179 3.19915 3.23534 3.47783 3.58349 3.62629 3.74473 3.80340 3.90477 3.97245 4.03294 4.11929 4.19446 4.23531 4.26545 4.33190 4.40632 4.45453 4.48992 4.61944 4.66405 4.68043 4.74466 4.75794 4.77906 4.79166 4.88721 4.95197 4.96888 5.07155 5.11412 5.17657 5.18720 5.26510 5.30577 5.36213 5.49924 5.61637 5.64668 5.76800 6.05093 6.13759 6.46313 6.74335 7.05414 7.39902 8.00878 8.81341 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003237 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.597319 B = 8647.102239 C = 9445.872982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.082 4.082 9 H 0.103 0.897 10 C -0.141 4.141 11 C -0.166 4.166 12 H 0.156 0.844 13 C 0.543 3.457 14 O -0.585 6.585 15 N -0.605 5.605 16 C 0.092 3.908 17 C -0.106 4.106 18 C -0.095 4.095 19 H 0.126 0.874 20 C 0.134 3.866 21 N -0.628 5.628 22 C -0.301 4.301 23 H 0.062 0.938 24 C -0.070 4.070 25 N -0.964 5.964 26 Si 1.108 2.892 27 H -0.310 1.310 28 H -0.303 1.303 29 H -0.278 1.278 30 C 0.104 3.896 31 C 0.131 3.869 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.077 0.923 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.482 26.679 -7.894 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.138 4.138 7 C -0.067 4.067 8 C -0.101 4.101 9 H 0.121 0.879 10 C -0.179 4.179 11 C -0.186 4.186 12 H 0.173 0.827 13 C 0.334 3.666 14 O -0.466 6.466 15 N -0.337 5.337 16 C -0.029 4.029 17 C -0.144 4.144 18 C -0.114 4.114 19 H 0.144 0.856 20 C 0.010 3.990 21 N -0.355 5.355 22 C -0.430 4.430 23 H 0.080 0.920 24 C -0.264 4.264 25 N -0.608 5.608 26 Si 0.941 3.059 27 H -0.240 1.240 28 H -0.232 1.232 29 H -0.204 1.204 30 C -0.022 4.022 31 C 0.027 3.973 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.096 0.904 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.040 0.960 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 13.309 27.264 -6.135 30.953 hybrid contribution -0.080 -1.638 -0.819 1.833 sum 13.228 25.626 -6.954 29.665 Atomic orbital electron populations 1.20840 0.91255 1.02883 1.02548 1.19929 0.96417 0.92957 0.99790 1.21268 0.94954 0.97420 1.00809 1.21486 0.94118 0.99200 0.99200 1.21422 1.01092 0.91973 0.99959 1.21266 0.92862 0.99622 1.00061 1.18971 0.93727 0.91820 1.02145 1.20977 1.00180 0.88911 1.00002 0.87890 1.23217 1.01894 0.97845 0.94896 1.22303 0.99069 1.02784 0.94457 0.82690 1.20016 0.89287 0.79030 0.78295 1.90679 1.29917 1.68586 1.57394 1.48460 1.12938 1.39599 1.32729 1.22703 0.85512 1.02527 0.92166 1.22826 0.96529 0.99644 0.95414 1.23233 0.98941 0.93573 0.95657 0.85623 1.21671 0.93621 0.96063 0.87675 1.44708 1.51098 1.06050 1.33691 1.20121 1.34026 0.85631 1.03243 0.92009 1.26534 0.98460 1.04485 0.96909 1.70942 1.49619 0.99114 1.41167 0.83261 0.76111 0.72097 0.74445 1.23950 1.23212 1.20448 1.22043 0.95289 0.87643 0.97185 1.22117 0.92022 0.89907 0.93298 0.88790 0.90994 0.90158 0.92784 0.84426 0.83753 0.83702 0.84427 0.90409 0.84061 0.91827 0.86948 0.86905 0.87803 0.94541 0.93784 0.93684 0.96020 0.96731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 9.33 71.24 0.66 -1.65 16 2 C -0.09 -1.80 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 4 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 5 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 6 C -0.12 -1.97 9.30 22.27 0.21 -1.76 16 7 C -0.07 -1.37 5.61 -19.87 -0.11 -1.48 16 8 C -0.08 -2.03 4.66 -11.54 -0.05 -2.08 16 9 H 0.10 3.07 6.43 -2.38 -0.02 3.06 16 10 C -0.14 -3.36 9.56 30.60 0.29 -3.07 16 11 C -0.17 -4.07 5.17 -11.54 -0.06 -4.13 16 12 H 0.16 2.73 7.05 -2.39 -0.02 2.72 16 13 C 0.54 18.56 7.18 87.66 0.63 19.19 16 14 O -0.59 -25.35 16.13 -3.04 -0.05 -25.40 16 15 N -0.61 -18.79 2.98 -786.09 -2.34 -21.13 16 16 C 0.09 1.91 6.22 86.84 0.54 2.45 16 17 C -0.11 -1.77 6.35 31.95 0.20 -1.57 16 18 C -0.09 -2.53 4.35 -8.86 -0.04 -2.57 16 19 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 20 C 0.13 4.90 6.44 86.76 0.56 5.46 16 21 N -0.63 -31.49 3.31 -697.73 -2.31 -33.80 16 22 C -0.30 -18.07 10.52 84.04 0.88 -17.19 16 23 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 24 C -0.07 -4.42 5.49 84.86 0.47 -3.96 16 25 N -0.96 -64.73 13.70 21.65 0.30 -64.43 16 26 Si 1.11 62.97 24.51 68.60 1.68 64.65 16 27 H -0.31 -17.79 7.11 99.48 0.71 -17.08 16 28 H -0.30 -16.95 6.86 99.48 0.68 -16.27 16 29 H -0.28 -15.30 5.41 99.48 0.54 -14.76 16 30 C 0.10 4.97 4.16 86.53 0.36 5.33 16 31 C 0.13 4.57 3.60 45.90 0.17 4.74 16 32 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 35 H 0.05 1.28 6.65 -2.39 -0.02 1.27 16 36 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.77 6.02 -2.91 -0.02 1.75 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.14 2.34 6.17 -2.39 -0.01 2.32 16 42 H 0.06 1.49 7.16 -2.39 -0.02 1.47 16 43 H 0.11 1.50 6.98 -2.38 -0.02 1.49 16 44 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16 45 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.04 1.28 6.51 -2.39 -0.02 1.26 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.25 16.78 8.73 -92.71 -0.81 15.98 16 49 H 0.02 1.14 6.72 -2.39 -0.02 1.13 16 50 H 0.02 0.81 3.02 -2.39 -0.01 0.81 16 Total: -1.00 -84.33 382.32 3.24 -81.08 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.72 Total: 7.93 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.25 Total: -8.90 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -4.36 Total: -119.36 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 62.97 SS G_CDS: 1.68 Total: 64.65 kcal Total: -84.33 3.24 -81.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076351307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.116 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds