Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38252 * 119.73648 * 2 1 4 4 C 1.37936 * 120.09960 * 179.97438 * 3 2 1 5 5 C 1.39494 * 119.76672 * 0.03069 * 4 3 2 6 6 C 1.47844 * 120.04217 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99769 * 216.89532 * 6 5 4 8 8 N 1.34772 * 120.00088 * 36.88943 * 6 5 4 9 9 C 1.47351 * 125.52733 * 4.97217 * 8 6 5 10 10 C 1.55159 * 104.78401 * 156.48832 * 9 8 6 11 11 C 1.54797 * 101.40305 * 37.51886 * 10 9 8 12 12 H 1.09000 * 112.64006 * 85.17587 * 11 10 9 13 13 C 1.53265 * 109.74718 * 212.13039 * 11 10 9 14 14 N 1.46582 * 108.16325 * 95.76613 * 13 11 10 15 15 C 1.36934 * 125.30968 * 177.89033 * 14 13 11 16 16 H 1.08000 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00095 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00119 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46932 * 60.00069 * 19 17 15 21 21 H 1.48503 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47258 * 300.00352 * 19 17 15 23 23 C 1.46609 * 109.38443 * 357.88416 * 14 13 11 24 24 C 1.47218 * 125.52949 * 185.27651 * 8 6 5 25 25 H 1.08997 * 112.28314 * 56.21105 * 24 8 6 26 26 C 1.39774 * 119.91278 * 0.02562 * 5 4 3 27 27 C 1.37975 * 119.76461 * 359.95498 * 26 5 4 28 28 C 1.51397 * 109.76310 * 180.02562 * 27 26 5 29 29 C 1.54348 * 105.16806 * 342.80927 * 28 27 26 30 30 C 1.51356 * 130.40645 * 179.97438 * 26 5 4 31 31 H 1.09005 * 109.47112 * 269.97698 * 1 2 3 32 32 H 1.08995 * 109.47404 * 29.97765 * 1 2 3 33 33 H 1.09003 * 109.47239 * 149.98061 * 1 2 3 34 34 H 1.08002 * 119.95055 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.11690 * 180.02562 * 4 3 2 36 36 H 1.08997 * 110.35568 * 275.43251 * 9 8 6 37 37 H 1.09001 * 110.35601 * 37.72526 * 9 8 6 38 38 H 1.09004 * 111.20361 * 279.43758 * 10 9 8 39 39 H 1.08992 * 110.95574 * 155.49415 * 10 9 8 40 40 H 1.09005 * 109.73588 * 215.44809 * 13 11 10 41 41 H 1.09005 * 109.73768 * 336.09757 * 13 11 10 42 42 H 0.97003 * 120.00382 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.91797 * 258.45225 * 23 14 13 44 44 H 1.09003 * 109.91016 * 137.17176 * 23 14 13 45 45 H 1.08994 * 110.30444 * 101.73582 * 28 27 26 46 46 H 1.09002 * 110.30099 * 223.89353 * 28 27 26 47 47 H 1.09003 * 110.82582 * 144.52859 * 29 28 27 48 48 H 1.09002 * 110.83324 * 268.10269 * 29 28 27 49 49 H 1.08997 * 110.30492 * 316.05452 * 30 26 5 50 50 H 1.08998 * 110.30822 * 78.22225 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.2005 0.0000 4 6 3.5720 1.2092 0.0005 5 6 4.2722 0.0027 0.0004 6 6 5.7507 0.0050 0.0004 7 8 6.3597 -0.8359 -0.6317 8 7 6.4231 0.9395 0.7011 9 6 5.8151 1.9469 1.5880 10 6 6.9460 2.3394 2.5752 11 6 8.1844 2.3164 1.6468 12 1 8.3253 3.2556 1.1119 13 6 9.4211 1.8871 2.4437 14 7 9.6095 0.4459 2.2538 15 6 10.6362 -0.2938 2.7770 16 1 11.3908 0.1835 3.3846 17 6 10.7073 -1.6572 2.5264 18 7 9.7881 -2.2390 1.7855 19 14 12.1083 -2.6662 3.2396 20 1 12.0797 -2.5748 4.7215 21 1 11.9563 -4.0849 2.8276 22 1 13.4028 -2.1410 2.7362 23 6 8.5272 -0.0801 1.4164 24 6 7.8838 1.1233 0.6997 25 1 8.2798 1.2789 -0.3038 26 6 3.5743 -1.2083 -0.0008 27 6 2.1945 -1.2036 -0.0009 28 6 1.6778 -2.6267 -0.0016 29 6 2.8777 -3.4918 -0.4422 30 6 4.0829 -2.6338 -0.0017 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6476 2.1328 0.0004 35 1 4.1080 2.1469 0.0010 36 1 5.4935 2.8145 1.0119 37 1 4.9725 1.5165 2.1292 38 1 7.0433 1.6054 3.3752 39 1 6.7801 3.3373 2.9811 40 1 10.2976 2.4238 2.0805 41 1 9.2702 2.1020 3.5016 42 1 9.8379 -3.1917 1.6101 43 1 7.7861 -0.5812 2.0389 44 1 8.9313 -0.7770 0.6820 45 1 1.3532 -2.9117 0.9991 46 1 0.8563 -2.7304 -0.7105 47 1 2.8749 -4.4509 0.0757 48 1 2.8773 -3.6336 -1.5230 49 1 4.9035 -2.7422 -0.7108 50 1 4.4062 -2.9207 0.9990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076617213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 22.593122 kcal Electronic energy + Delta-G solvation = -30550.433132 eV Core-core repulsion = 26735.759505 eV Total energy + Delta-G solvation = -3814.673628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69785 -39.61025 -37.56455 -35.90304 -34.85953 -33.15595 -32.08688 -30.60462 -29.14847 -28.76809 -28.00447 -27.22927 -26.20314 -24.43884 -23.20262 -21.99653 -21.13005 -21.01879 -20.21438 -19.41836 -18.63129 -17.02387 -16.60112 -16.17711 -15.74766 -15.46808 -15.09978 -14.97963 -14.49530 -14.10715 -13.89536 -13.76091 -13.45850 -13.36432 -13.20203 -12.81096 -12.74158 -12.57179 -12.33397 -12.15406 -12.14183 -11.87967 -11.70197 -11.51811 -11.33591 -11.21306 -11.12825 -11.00827 -10.95677 -10.82144 -10.74287 -10.40000 -10.15313 -10.00434 -9.72607 -9.65552 -9.34975 -8.59983 -8.55357 -8.53820 -8.11690 -6.76854 -5.57286 -2.99835 0.98732 1.32226 3.07729 3.32777 3.44752 3.48503 3.50848 3.82892 4.33499 4.52786 4.54198 4.63820 4.72609 4.86005 4.93163 5.01236 5.03689 5.09971 5.16915 5.23084 5.37197 5.42179 5.45920 5.54299 5.58383 5.62306 5.65143 5.68175 5.74631 5.77786 5.84968 5.85746 5.91795 5.95992 6.05977 6.08606 6.20432 6.22384 6.26487 6.30104 6.38500 6.45264 6.56134 6.57290 6.67945 6.73207 6.88546 6.92875 7.61689 7.68943 7.95547 8.04422 8.43335 8.63655 9.29499 9.90462 10.52861 11.46580 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.003493 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.773396 B = 8015.146808 C = 9553.442959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.088 4.088 5 C -0.114 4.114 6 C 0.567 3.433 7 O -0.517 6.517 8 N -0.603 5.603 9 C 0.102 3.898 10 C -0.123 4.123 11 C -0.110 4.110 12 H 0.087 0.913 13 C 0.146 3.854 14 N -0.602 5.602 15 C -0.233 4.233 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.913 5.913 19 Si 0.912 3.088 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.168 3.832 24 C 0.115 3.885 25 H 0.082 0.918 26 C -0.032 4.032 27 C -0.109 4.109 28 C -0.077 4.077 29 C -0.120 4.120 30 C -0.092 4.092 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 7.591 -3.026 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.355 3.645 7 O -0.393 6.393 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.129 4.129 12 H 0.105 0.895 13 C 0.019 3.981 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.559 5.559 19 Si 0.743 3.257 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.043 3.957 24 C 0.011 3.989 25 H 0.100 0.900 26 C -0.033 4.033 27 C -0.109 4.109 28 C -0.114 4.114 29 C -0.157 4.157 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.737 6.827 -3.420 21.162 hybrid contribution 0.700 -0.290 0.490 0.902 sum -19.037 6.538 -2.930 20.340 Atomic orbital electron populations 1.20801 0.91300 1.02712 1.02321 1.19562 0.95869 0.91870 0.98610 1.20799 0.93774 0.97243 1.03170 1.21333 0.94241 0.97060 0.98042 1.19547 0.93007 0.93158 1.05956 1.17935 0.86436 0.80552 0.79530 1.90818 1.69285 1.36095 1.43118 1.48442 1.07829 1.32208 1.45273 1.22461 0.96857 0.91152 0.91674 1.22856 0.93716 1.01897 0.97613 1.22875 0.96053 0.97647 0.96333 0.89475 1.20968 0.93465 0.87327 0.96311 1.44172 1.27830 1.01900 1.58987 1.18964 1.01441 0.89866 1.25844 0.90478 1.24845 0.98609 0.96655 1.00236 1.69926 1.34346 1.10165 1.41512 0.86201 0.81636 0.79430 0.78468 1.21254 1.21589 1.21146 1.21634 0.89014 0.91195 0.93897 1.22978 0.78872 0.97983 0.99051 0.90031 1.20550 0.93494 0.94417 0.94813 1.20406 0.93658 0.94752 1.02111 1.21026 0.98379 0.90205 1.01816 1.22318 0.93726 0.98197 1.01477 1.21193 0.98896 0.89320 1.03437 0.91082 0.91566 0.91499 0.85570 0.85101 0.91833 0.90956 0.89930 0.90393 0.95912 0.95740 0.93621 0.96249 0.88607 0.90290 0.90861 0.90444 0.90941 0.88655 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.86 36.00 0.35 -0.51 16 2 C -0.06 -0.64 5.89 -104.48 -0.62 -1.25 16 3 C -0.13 -1.41 9.67 -39.69 -0.38 -1.79 16 4 C -0.09 -1.11 8.18 -39.22 -0.32 -1.43 16 5 C -0.11 -1.81 5.41 -104.93 -0.57 -2.38 16 6 C 0.57 11.06 7.25 -12.33 -0.09 10.97 16 7 O -0.52 -12.15 15.46 5.32 0.08 -12.07 16 8 N -0.60 -10.93 2.85 -162.64 -0.46 -11.40 16 9 C 0.10 1.39 5.21 -2.43 -0.01 1.38 16 10 C -0.12 -1.76 6.25 -24.64 -0.15 -1.92 16 11 C -0.11 -1.85 3.91 -88.33 -0.34 -2.20 16 12 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.15 3.01 6.65 -3.86 -0.03 2.99 16 14 N -0.60 -15.83 3.37 -172.22 -0.58 -16.42 16 15 C -0.23 -6.66 10.25 -15.06 -0.15 -6.81 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.91 -28.04 10.17 55.49 0.56 -27.48 16 19 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.17 4.36 4.69 -3.39 -0.02 4.35 16 24 C 0.11 2.34 3.90 -65.74 -0.26 2.08 16 25 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 26 C -0.03 -0.49 5.99 -103.82 -0.62 -1.11 16 27 C -0.11 -1.36 6.00 -104.24 -0.63 -1.98 16 28 C -0.08 -0.78 6.26 -26.83 -0.17 -0.94 16 29 C -0.12 -1.32 7.08 -25.31 -0.18 -1.50 16 30 C -0.09 -1.37 6.17 -26.85 -0.17 -1.54 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.46 7.26 -51.93 -0.38 0.08 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.43 5.75 -52.48 -0.30 1.13 16 36 H 0.06 0.70 6.87 -51.93 -0.36 0.34 16 37 H 0.07 0.95 7.30 -51.93 -0.38 0.57 16 38 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 44 H 0.10 2.92 6.22 -51.93 -0.32 2.59 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.61 7.61 -51.93 -0.39 0.21 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 1.65 7.08 -51.93 -0.37 1.29 16 50 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -34.38 384.03 -11.99 -46.37 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.92 Total: 1.44 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -4.44 Total: -3.90 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.48 Total: -55.29 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.38 -11.99 -46.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076617213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.964 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds