Wall clock time and date at job start Sat Apr 11 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 115.54569 * 2 1 4 4 O 1.21281 * 119.99852 * 244.93283 * 3 2 1 5 5 N 1.34777 * 119.99999 * 64.93951 * 3 2 1 6 6 C 1.49834 * 135.06955 * 355.33815 * 5 3 2 7 7 C 1.54646 * 85.09996 * 153.76551 * 6 5 3 8 8 H 1.09003 * 114.44240 * 140.13469 * 7 6 5 9 9 C 1.53019 * 110.83697 * 269.94051 * 7 6 5 10 10 C 1.53107 * 109.44511 * 143.89399 * 9 7 6 11 11 N 1.46616 * 108.00963 * 301.02215 * 10 9 7 12 12 C 1.36935 * 119.88982 * 237.30260 * 11 10 9 13 13 H 1.08001 * 119.99682 * 150.57605 * 12 11 10 14 14 C 1.38807 * 120.00364 * 330.58162 * 12 11 10 15 15 N 1.31613 * 120.00065 * 147.12990 * 14 12 11 16 16 Si 1.86802 * 119.99793 * 327.12986 * 14 12 11 17 17 H 1.48499 * 109.47295 * 264.81420 * 16 14 12 18 18 H 1.48499 * 109.47071 * 144.81312 * 16 14 12 19 19 H 1.48499 * 109.47208 * 24.81655 * 16 14 12 20 20 C 1.45677 * 120.21463 * 57.58421 * 11 10 9 21 21 C 1.46824 * 135.00883 * 175.27453 * 5 3 2 22 22 H 1.09001 * 111.55817 * 94.50051 * 21 5 3 23 23 C 1.52998 * 117.50133 * 214.33128 * 2 1 3 24 24 C 1.52995 * 117.50141 * 145.66845 * 2 1 3 25 25 H 1.09002 * 117.50158 * 215.00573 * 24 2 1 26 26 C 1.50709 * 117.49791 * 0.02643 * 24 2 1 27 27 C 1.38230 * 119.99853 * 59.72359 * 26 24 2 28 28 C 1.38239 * 119.99758 * 179.78976 * 27 26 24 29 29 C 1.38236 * 119.99908 * 0.45988 * 28 27 26 30 30 C 1.38236 * 120.00021 * 359.77405 * 29 28 27 31 31 C 1.38230 * 119.99992 * 0.02562 * 30 29 28 32 32 H 1.08999 * 109.47663 * 60.01042 * 1 2 3 33 33 H 1.09001 * 109.46933 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47452 * 300.00824 * 1 2 3 35 35 H 1.09000 * 114.36370 * 39.79800 * 6 5 3 36 36 H 1.09003 * 113.83868 * 267.67535 * 6 5 3 37 37 H 1.08998 * 109.47482 * 23.90260 * 9 7 6 38 38 H 1.09004 * 109.47517 * 263.88899 * 9 7 6 39 39 H 1.08997 * 109.74806 * 181.39625 * 10 9 7 40 40 H 1.08996 * 109.75349 * 60.65387 * 10 9 7 41 41 H 0.97007 * 119.99718 * 179.97438 * 15 14 12 42 42 H 1.09001 * 108.71915 * 81.49168 * 20 11 10 43 43 H 1.09003 * 108.71591 * 199.51099 * 20 11 10 44 44 H 1.09005 * 117.49575 * 359.97438 * 23 2 1 45 45 H 1.08992 * 117.50194 * 144.99637 * 23 2 1 46 46 H 1.08000 * 120.00504 * 359.97438 * 27 26 24 47 47 H 1.07992 * 119.99983 * 180.25592 * 28 27 26 48 48 H 1.08000 * 120.00214 * 179.78728 * 29 28 27 49 49 H 1.07995 * 119.99948 * 179.97438 * 30 29 28 50 50 H 1.08002 * 120.00463 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.8429 1.7149 -0.9514 5 7 2.0244 2.1809 1.0573 6 6 1.2363 2.1330 2.3308 7 6 2.3324 3.0705 2.8889 8 1 1.9599 3.8648 3.5358 9 6 3.4735 2.2635 3.5118 10 6 4.8049 2.9677 3.2371 11 7 4.9689 3.0767 1.7842 12 6 6.0731 2.5379 1.1798 13 1 6.0119 2.1822 0.1618 14 6 7.2711 2.4488 1.8752 15 7 8.0923 1.4463 1.6456 16 14 7.7176 3.7517 3.1372 17 1 8.5771 4.7825 2.5015 18 1 8.4523 3.1198 4.2624 19 1 6.4783 4.3886 3.6508 20 6 3.9638 3.7617 0.9825 21 6 2.5585 3.4940 1.4396 22 1 1.8861 4.3005 1.1471 23 6 2.2365 -1.1207 -0.7654 24 6 2.2365 -1.1206 0.7654 25 1 3.1714 -0.8745 1.2689 26 6 1.3721 -2.1405 1.4611 27 6 0.4817 -2.9052 0.7309 28 6 -0.3081 -3.8436 1.3685 29 6 -0.2143 -4.0106 2.7376 30 6 0.6727 -3.2425 3.4684 31 6 1.4654 -2.3070 2.8302 32 1 -0.3634 0.5136 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.2108 1.1530 2.8072 36 1 0.2535 2.5989 2.2584 37 1 3.4934 1.2652 3.0745 38 1 3.3185 2.1859 4.5879 39 1 5.6239 2.3840 3.6575 40 1 4.7942 3.9625 3.6824 41 1 8.9297 1.3842 2.1314 42 1 4.1435 4.8354 1.0388 43 1 4.0698 3.4461 -0.0555 44 1 1.6112 -1.8583 -1.2686 45 1 3.1713 -0.8746 -1.2689 46 1 0.4051 -2.7716 -0.3380 47 1 -1.0008 -4.4440 0.7976 48 1 -0.8338 -4.7414 3.2362 49 1 0.7457 -3.3726 4.5379 50 1 2.1581 -1.7065 3.4012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084714093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:53 Heat of formation + Delta-G solvation = 91.505348 kcal Electronic energy + Delta-G solvation = -31094.043029 eV Core-core repulsion = 27282.357659 eV Total energy + Delta-G solvation = -3811.685369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.77391 -39.82969 -38.21563 -36.32611 -35.39854 -31.90801 -31.17483 -31.13067 -30.82560 -29.31811 -28.37620 -27.21012 -24.03686 -23.88376 -23.64742 -22.75056 -21.88878 -21.15726 -20.44659 -19.23421 -17.64636 -16.98145 -16.95004 -16.33014 -15.81304 -15.50131 -15.24639 -14.95608 -14.84671 -14.28726 -13.95100 -13.81881 -13.62087 -13.41776 -13.29358 -13.11926 -12.92855 -12.77452 -12.52341 -12.27704 -12.26373 -12.07729 -11.81974 -11.67421 -11.47946 -11.27273 -11.06842 -11.01294 -10.83899 -10.64627 -10.54419 -10.23015 -10.02950 -9.95818 -9.73482 -9.30943 -9.09944 -8.98125 -8.57244 -8.45469 -8.21453 -6.86973 -5.94489 -3.18892 1.20421 1.29635 2.98220 3.04287 3.42256 3.54238 3.54928 3.58652 4.00722 4.41370 4.58182 4.62381 4.66374 4.73697 4.76117 4.88004 4.91085 4.98746 5.01245 5.10095 5.19527 5.25693 5.38418 5.43057 5.49171 5.51602 5.57580 5.61212 5.65569 5.68656 5.77432 5.87359 5.89756 5.94558 5.97030 5.98728 6.06046 6.12860 6.21718 6.27521 6.37736 6.38991 6.41688 6.43975 6.59106 6.67308 6.78024 6.87386 6.89613 7.03285 8.07558 8.12360 8.44540 8.63770 9.08088 9.82250 10.19047 11.20753 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.003839 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.241595 B = 7291.460373 C = 7718.342293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C 0.577 3.423 4 O -0.528 6.528 5 N -0.627 5.627 6 C 0.100 3.900 7 C -0.107 4.107 8 H 0.087 0.913 9 C -0.120 4.120 10 C 0.145 3.855 11 N -0.592 5.592 12 C -0.262 4.262 13 H 0.079 0.921 14 C 0.036 3.964 15 N -0.890 5.890 16 Si 0.838 3.162 17 H -0.295 1.295 18 H -0.296 1.296 19 H -0.253 1.253 20 C 0.141 3.859 21 C 0.133 3.867 22 H 0.077 0.923 23 C -0.138 4.138 24 C -0.098 4.098 25 H 0.122 0.878 26 C -0.039 4.039 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.128 4.128 30 C -0.117 4.117 31 C -0.109 4.109 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.020 0.980 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.123 -6.586 4.014 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.139 4.139 3 C 0.366 3.634 4 O -0.404 6.404 5 N -0.363 5.363 6 C -0.023 4.023 7 C -0.126 4.126 8 H 0.105 0.895 9 C -0.159 4.159 10 C 0.019 3.981 11 N -0.315 5.315 12 C -0.390 4.390 13 H 0.097 0.903 14 C -0.164 4.164 15 N -0.531 5.531 16 Si 0.665 3.335 17 H -0.223 1.223 18 H -0.223 1.223 19 H -0.177 1.177 20 C 0.014 3.986 21 C 0.029 3.971 22 H 0.095 0.905 23 C -0.175 4.175 24 C -0.116 4.116 25 H 0.140 0.860 26 C -0.040 4.040 27 C -0.138 4.138 28 C -0.138 4.138 29 C -0.146 4.146 30 C -0.135 4.135 31 C -0.127 4.127 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.129 0.871 46 H 0.142 0.858 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.578 -6.617 3.306 21.867 hybrid contribution 0.408 0.746 0.742 1.128 sum -20.170 -5.871 4.047 21.394 Atomic orbital electron populations 1.21389 0.90604 1.03058 1.02063 1.21462 0.95722 0.89320 1.07360 1.18885 0.79938 0.84165 0.80450 1.90705 1.40436 1.75642 1.33630 1.50194 1.46497 1.20269 1.19316 1.23890 0.95219 1.00393 0.82792 1.22842 0.96098 0.98019 0.95676 0.89467 1.21932 0.95871 0.99686 0.98445 1.21270 0.94383 0.97008 0.85435 1.43776 1.21409 1.64622 1.01665 1.18813 0.86616 1.33145 1.00405 0.90326 1.25245 0.96162 0.97472 0.97546 1.70059 1.12322 1.27384 1.43328 0.87604 0.79321 0.85103 0.81425 1.22268 1.22326 1.17734 1.20138 0.86190 0.94876 0.97393 1.22247 0.97502 0.85183 0.92139 0.90497 1.23201 1.02972 0.98198 0.93085 1.21287 0.99778 0.96101 0.94462 0.85993 1.19117 0.95794 0.95621 0.93420 1.21080 0.96474 0.96275 1.00017 1.21088 0.99594 0.98363 0.94784 1.21117 0.99259 0.99953 0.94310 1.21130 0.96322 0.96186 0.99878 1.21052 0.99408 0.98386 0.93875 0.91999 0.90876 0.92051 0.90066 0.90259 0.91502 0.92484 0.91445 0.95244 0.92969 0.96251 0.90141 0.87928 0.87079 0.85827 0.86259 0.86378 0.86102 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.14 -1.93 2.29 -155.66 -0.36 -2.29 16 3 C 0.58 10.51 7.21 -10.99 -0.08 10.44 16 4 O -0.53 -11.97 15.77 5.56 0.09 -11.88 16 5 N -0.63 -10.15 3.38 -171.62 -0.58 -10.73 16 6 C 0.10 1.20 7.22 -1.42 -0.01 1.19 16 7 C -0.11 -1.48 4.35 -89.97 -0.39 -1.87 16 8 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.12 -1.98 5.66 -26.67 -0.15 -2.13 16 10 C 0.14 3.06 4.27 -3.92 -0.02 3.04 16 11 N -0.59 -14.22 2.70 -175.42 -0.47 -14.70 16 12 C -0.26 -7.54 9.80 -15.06 -0.15 -7.69 16 13 H 0.08 2.54 8.02 -52.49 -0.42 2.12 16 14 C 0.04 1.05 4.88 -17.43 -0.09 0.96 16 15 N -0.89 -27.55 13.97 55.49 0.78 -26.77 16 16 Si 0.84 21.39 26.38 -169.99 -4.48 16.91 16 17 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 18 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 19 H -0.25 -5.98 4.72 56.52 0.27 -5.71 16 20 C 0.14 2.97 6.11 -5.89 -0.04 2.93 16 21 C 0.13 2.19 4.24 -69.43 -0.29 1.89 16 22 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 23 C -0.14 -1.92 9.11 -26.69 -0.24 -2.16 16 24 C -0.10 -1.37 5.75 -91.73 -0.53 -1.90 16 25 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 26 C -0.04 -0.47 5.05 -104.62 -0.53 -1.00 16 27 C -0.12 -1.25 7.23 -39.58 -0.29 -1.54 16 28 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 29 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 30 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 31 C -0.11 -1.24 9.74 -39.58 -0.39 -1.63 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.72 4.77 -51.93 -0.25 0.48 16 34 H 0.06 0.65 7.22 -51.93 -0.38 0.27 16 35 H 0.08 0.93 7.97 -51.93 -0.41 0.51 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.57 5.47 -51.93 -0.28 1.29 16 40 H 0.03 0.61 6.70 -51.93 -0.35 0.26 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.94 6.26 -51.93 -0.33 1.61 16 44 H 0.10 1.14 6.18 -51.93 -0.32 0.82 16 45 H 0.11 1.81 7.98 -51.93 -0.41 1.40 16 46 H 0.12 1.15 5.41 -52.49 -0.28 0.86 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 50 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -34.10 384.61 -11.03 -45.13 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.75 Total: 3.57 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -4.39 Total: -7.32 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.28 Total: -52.20 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.48 Total: 16.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.10 -11.03 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084714093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.634 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds