Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 110.34690 * 2 1 4 4 O 1.21277 * 120.00058 * 120.69628 * 3 2 1 5 5 N 1.34778 * 119.99843 * 300.70179 * 3 2 1 6 6 C 1.46498 * 119.99967 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.78019 * 36.78983 * 6 5 3 8 8 C 1.54319 * 110.72349 * 273.54585 * 6 5 3 9 9 N 1.47029 * 107.27012 * 219.44549 * 8 6 5 10 10 C 1.36936 * 125.64354 * 178.97539 * 9 8 6 11 11 H 1.07999 * 119.99518 * 174.79282 * 10 9 8 12 12 C 1.38812 * 120.00383 * 354.79076 * 10 9 8 13 13 N 1.31621 * 120.00098 * 7.05412 * 12 10 9 14 14 Si 1.86798 * 120.00036 * 187.05543 * 12 10 9 15 15 H 1.48501 * 109.47413 * 94.98720 * 14 12 10 16 16 H 1.48496 * 109.47210 * 214.98620 * 14 12 10 17 17 H 1.48498 * 109.47482 * 334.98719 * 14 12 10 18 18 C 1.47416 * 108.70364 * 358.93858 * 9 8 6 19 19 C 1.54915 * 104.83400 * 24.13141 * 18 9 8 20 20 H 1.08993 * 111.00621 * 81.06415 * 19 18 9 21 21 C 1.50699 * 111.00180 * 204.91479 * 19 18 9 22 22 C 1.38231 * 119.99865 * 58.27587 * 21 19 18 23 23 C 1.38240 * 119.99774 * 179.80861 * 22 21 19 24 24 C 1.38230 * 120.00064 * 0.39430 * 23 22 21 25 25 C 1.38235 * 120.00044 * 359.85547 * 24 23 22 26 26 C 1.38233 * 119.99813 * 359.95711 * 25 24 23 27 27 C 1.51099 * 110.38777 * 237.70990 * 2 1 3 28 28 C 1.30533 * 111.10404 * 224.63827 * 27 2 1 29 29 C 1.51099 * 111.10448 * 0.02562 * 28 27 2 30 30 C 1.54639 * 110.38381 * 122.28724 * 2 1 3 31 31 H 1.08996 * 109.47224 * 59.30256 * 1 2 3 32 32 H 1.09005 * 109.47280 * 179.29889 * 1 2 3 33 33 H 1.09000 * 109.47661 * 299.29882 * 1 2 3 34 34 H 0.97000 * 120.00054 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.88629 * 100.02779 * 8 6 5 36 36 H 1.09005 * 109.88133 * 338.86162 * 8 6 5 37 37 H 0.96998 * 120.00002 * 179.97438 * 13 12 10 38 38 H 1.09002 * 110.36600 * 142.96818 * 18 9 8 39 39 H 1.08994 * 110.36799 * 265.28883 * 18 9 8 40 40 H 1.07998 * 120.00635 * 359.97438 * 22 21 19 41 41 H 1.08003 * 120.00125 * 180.22595 * 23 22 21 42 42 H 1.08007 * 120.00222 * 179.83925 * 24 23 22 43 43 H 1.08001 * 120.00548 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.99958 * 179.97438 * 26 25 24 45 45 H 1.08002 * 124.44682 * 44.65896 * 27 2 1 46 46 H 1.07998 * 124.44336 * 179.97438 * 28 27 2 47 47 H 1.08991 * 110.38966 * 135.24898 * 29 28 27 48 48 H 1.09004 * 110.38234 * 257.51221 * 29 28 27 49 49 H 1.09003 * 111.03226 * 261.58498 * 30 2 1 50 50 H 1.08993 * 111.04066 * 25.52494 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7675 1.7951 0.9031 5 7 1.7295 2.2520 -1.0036 6 6 2.2384 3.6257 -1.0034 7 1 3.2554 3.6613 -0.6130 8 6 1.3091 4.5522 -0.1913 9 7 1.2254 5.8294 -0.9147 10 6 0.4823 6.9149 -0.5341 11 1 0.5525 7.8387 -1.0892 12 6 -0.3612 6.8278 0.5649 13 7 -0.3449 5.7523 1.3235 14 14 -1.5194 8.2371 0.9673 15 1 -2.8519 7.9689 0.3692 16 1 -1.6543 8.3616 2.4409 17 1 -0.9729 9.5011 0.4117 18 6 2.0746 5.7483 -2.1170 19 6 2.1762 4.2344 -2.4293 20 1 1.2932 3.8857 -2.9647 21 6 3.4317 3.9258 -3.2036 22 6 4.6672 4.2473 -2.6736 23 6 5.8191 3.9606 -3.3821 24 6 5.7349 3.3598 -4.6242 25 6 4.4991 3.0430 -5.1565 26 6 3.3475 3.3261 -4.4463 27 6 2.0563 -0.7566 -1.1973 28 6 3.0323 -1.5540 -0.8575 29 6 3.3191 -1.4626 0.6233 30 6 2.0686 -0.7743 1.2254 31 1 -0.3633 0.5246 -0.8836 32 1 -0.3634 -1.0276 -0.0126 33 1 -0.3634 0.5029 0.8962 34 1 1.1590 1.9462 -1.7261 35 1 1.7252 4.7158 0.8028 36 1 0.3179 4.1056 -0.1116 37 1 -0.9340 5.6917 2.0917 38 1 1.6070 6.2765 -2.9480 39 1 3.0625 6.1606 -1.9121 40 1 4.7328 4.7200 -1.7048 41 1 6.7846 4.2084 -2.9665 42 1 6.6347 3.1381 -5.1790 43 1 4.4333 2.5740 -6.1271 44 1 2.3820 3.0790 -4.8623 45 1 1.6753 -0.6512 -2.2024 46 1 3.5643 -2.1955 -1.5443 47 1 3.4458 -2.4584 1.0477 48 1 4.2090 -0.8588 0.8010 49 1 2.3444 -0.0916 2.0292 50 1 1.3444 -1.5116 1.5717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086603990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = 31.688501 kcal Electronic energy + Delta-G solvation = -30499.177812 eV Core-core repulsion = 26684.898590 eV Total energy + Delta-G solvation = -3814.279222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.44429 -39.43671 -37.76311 -36.69955 -33.90693 -32.76355 -31.38557 -30.95128 -30.72350 -28.98823 -28.05981 -27.01605 -25.02913 -24.50367 -22.75940 -22.40939 -21.62551 -20.20054 -19.82538 -19.59954 -18.60681 -17.14603 -16.77389 -16.65712 -15.82911 -15.48239 -15.10352 -14.73283 -14.66334 -14.33472 -14.04546 -13.76405 -13.53873 -13.22217 -13.01041 -12.88699 -12.72224 -12.42404 -12.26623 -12.12577 -12.03026 -11.94719 -11.80975 -11.28581 -11.17934 -11.09392 -11.07324 -11.00930 -10.91749 -10.78081 -10.71253 -10.37623 -10.09171 -9.93611 -9.75722 -9.71031 -8.81932 -8.78214 -8.65143 -8.59146 -8.26995 -6.85110 -5.71363 -3.05885 1.50967 1.54696 2.11830 3.09347 3.40154 3.45390 3.47928 3.60654 3.92457 4.48164 4.49064 4.61764 4.88646 4.93972 4.99089 5.04389 5.10336 5.21440 5.25988 5.33401 5.39200 5.46840 5.49898 5.60688 5.63157 5.67590 5.70569 5.72935 5.76407 5.80228 5.86023 5.93901 6.07544 6.15810 6.16807 6.19707 6.24260 6.33555 6.34387 6.37802 6.54889 6.59164 6.65617 6.73244 6.78823 6.83008 6.97930 7.15639 7.54287 7.60884 7.84236 7.97271 8.23751 8.67731 9.19854 9.80440 10.45112 11.39330 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007862 B = 0.004745 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.618074 B = 5899.761247 C = 8714.243414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C 0.532 3.468 4 O -0.536 6.536 5 N -0.708 5.708 6 C 0.129 3.871 7 H 0.087 0.913 8 C 0.172 3.828 9 N -0.604 5.604 10 C -0.233 4.233 11 H 0.079 0.921 12 C -0.004 4.004 13 N -0.915 5.915 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.281 1.281 18 C 0.148 3.852 19 C -0.075 4.075 20 H 0.086 0.914 21 C -0.056 4.056 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.154 4.154 29 C -0.102 4.102 30 C -0.108 4.108 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.025 0.975 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 -14.547 -9.912 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C 0.317 3.683 4 O -0.412 6.412 5 N -0.358 5.358 6 C 0.024 3.976 7 H 0.105 0.895 8 C 0.047 3.953 9 N -0.330 5.330 10 C -0.361 4.361 11 H 0.097 0.903 12 C -0.201 4.201 13 N -0.562 5.562 14 Si 0.740 3.260 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.021 3.979 19 C -0.095 4.095 20 H 0.104 0.896 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.176 4.176 28 C -0.172 4.172 29 C -0.139 4.139 30 C -0.145 4.145 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.490 -14.176 -9.051 18.411 hybrid contribution -0.916 0.581 -0.267 1.117 sum 6.573 -13.595 -9.318 17.744 Atomic orbital electron populations 1.21784 0.92054 1.02364 1.03076 1.20639 0.97190 0.92731 0.95640 1.20125 0.80260 0.86260 0.81675 1.90672 1.37610 1.77294 1.35655 1.45832 1.52126 1.12336 1.25510 1.22486 0.99458 0.80794 0.94883 0.89470 1.21522 0.96514 0.83956 0.93335 1.44420 1.53016 1.12860 1.22746 1.19043 1.16353 0.90192 1.10495 0.90274 1.24834 0.99794 0.97721 0.97756 1.69989 1.40626 1.27815 1.17762 0.86134 0.81194 0.81318 0.77344 1.21632 1.21755 1.20597 1.21586 0.94782 0.90779 0.90746 1.21677 0.94462 0.98900 0.94459 0.89595 1.19810 0.94632 0.96822 0.94373 1.21106 0.91966 0.99575 1.00170 1.21109 0.98246 0.99221 0.95057 1.21051 0.97416 1.00423 0.96188 1.21045 0.92674 1.00659 0.99638 1.21024 0.98308 0.99777 0.94591 1.23061 0.98784 0.97913 0.97814 1.23348 0.97401 0.99012 0.97396 1.21433 0.99152 1.00599 0.92704 1.22521 0.96519 0.98653 0.96836 0.92054 0.91677 0.91497 0.77228 0.93398 0.92821 0.93695 0.93679 0.95754 0.85856 0.86406 0.86666 0.86568 0.86367 0.85514 0.85745 0.91220 0.90324 0.88920 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.40 37.16 0.31 -1.29 16 2 C -0.06 -0.77 0.73 -155.76 -0.11 -0.89 16 3 C 0.53 9.17 6.54 -10.99 -0.07 9.09 16 4 O -0.54 -11.41 15.18 5.56 0.08 -11.32 16 5 N -0.71 -11.64 4.98 -52.03 -0.26 -11.90 16 6 C 0.13 2.46 2.63 -66.10 -0.17 2.29 16 7 H 0.09 1.80 6.35 -51.93 -0.33 1.47 16 8 C 0.17 4.23 5.13 -3.06 -0.02 4.22 16 9 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 10 C -0.23 -6.45 10.26 -15.06 -0.15 -6.61 16 11 H 0.08 2.12 7.84 -52.49 -0.41 1.70 16 12 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 13 N -0.92 -27.12 10.36 55.49 0.57 -26.55 16 14 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.15 2.99 6.65 -2.53 -0.02 2.98 16 19 C -0.08 -1.27 2.87 -89.62 -0.26 -1.52 16 20 H 0.09 1.37 7.82 -51.93 -0.41 0.97 16 21 C -0.06 -0.83 5.00 -104.63 -0.52 -1.35 16 22 C -0.11 -1.64 8.28 -39.58 -0.33 -1.97 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 24 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.52 9.69 -39.58 -0.38 -1.91 16 27 C -0.16 -1.76 9.34 -35.70 -0.33 -2.09 16 28 C -0.15 -1.64 10.78 -35.70 -0.38 -2.02 16 29 C -0.10 -1.15 6.81 -26.67 -0.18 -1.34 16 30 C -0.11 -1.36 6.06 -24.86 -0.15 -1.51 16 31 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.39 5.42 7.95 -40.82 -0.32 5.10 16 35 H 0.05 1.38 7.61 -51.93 -0.40 0.98 16 36 H 0.05 1.45 7.18 -51.93 -0.37 1.08 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.50 7.05 -51.93 -0.37 0.13 16 40 H 0.12 1.94 7.01 -52.49 -0.37 1.57 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.31 7.99 -52.48 -0.42 0.89 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.09 1.38 6.92 -51.93 -0.36 1.02 16 50 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -32.64 398.12 -11.19 -43.83 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.92 Total: 8.47 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.07 Total: -9.79 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.26 Total: -54.27 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.64 -11.19 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086603990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.518 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds