Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50709 * 110.34474 * 2 1 4 4 O 1.21286 * 119.99520 * 237.71263 * 3 2 1 5 5 N 1.34767 * 120.00052 * 57.70429 * 3 2 1 6 6 C 1.46505 * 120.00098 * 180.02562 * 5 3 2 7 7 H 1.08994 * 110.77692 * 31.75863 * 6 5 3 8 8 C 1.54325 * 110.71785 * 268.52628 * 6 5 3 9 9 N 1.47024 * 107.27319 * 219.44310 * 8 6 5 10 10 C 1.36929 * 125.65087 * 178.98929 * 9 8 6 11 11 H 1.08004 * 119.99994 * 174.78340 * 10 9 8 12 12 C 1.38816 * 120.00352 * 354.78007 * 10 9 8 13 13 N 1.31622 * 119.99557 * 7.06084 * 12 10 9 14 14 Si 1.86794 * 120.00181 * 187.05214 * 12 10 9 15 15 H 1.48506 * 109.46736 * 94.99214 * 14 12 10 16 16 H 1.48503 * 109.47215 * 214.98830 * 14 12 10 17 17 H 1.48500 * 109.47446 * 334.99055 * 14 12 10 18 18 C 1.47426 * 108.69988 * 358.94053 * 9 8 6 19 19 C 1.54912 * 104.83376 * 24.12944 * 18 9 8 20 20 H 1.08994 * 111.03677 * 81.07494 * 19 18 9 21 21 C 1.50701 * 111.00351 * 204.91730 * 19 18 9 22 22 C 1.38233 * 119.99673 * 232.19453 * 21 19 18 23 23 C 1.38236 * 120.00299 * 179.97438 * 22 21 19 24 24 C 1.38239 * 119.99489 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00212 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00087 * 52.21920 * 21 19 18 27 27 C 1.51100 * 110.48477 * 122.34839 * 2 1 3 28 28 C 1.30521 * 111.10857 * 135.29760 * 27 2 1 29 29 C 1.51104 * 111.10006 * 0.02562 * 28 27 2 30 30 C 1.54628 * 110.39038 * 237.71118 * 2 1 3 31 31 H 1.09002 * 109.46500 * 60.70784 * 1 2 3 32 32 H 1.08997 * 109.46730 * 180.70085 * 1 2 3 33 33 H 1.08998 * 109.47214 * 300.70561 * 1 2 3 34 34 H 0.97003 * 120.00018 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.88424 * 338.86096 * 8 6 5 36 36 H 1.09000 * 109.88568 * 99.86942 * 8 6 5 37 37 H 0.96994 * 119.99855 * 180.02562 * 13 12 10 38 38 H 1.09003 * 110.36750 * 265.29412 * 18 9 8 39 39 H 1.08995 * 110.36981 * 142.96655 * 18 9 8 40 40 H 1.08007 * 120.00105 * 359.97438 * 22 21 19 41 41 H 1.07997 * 120.00509 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.99917 * 179.70291 * 24 23 22 43 43 H 1.07998 * 120.00131 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00051 * 0.02562 * 26 21 19 45 45 H 1.08004 * 124.44575 * 315.27573 * 27 2 1 46 46 H 1.07999 * 124.45236 * 179.97438 * 28 27 2 47 47 H 1.09005 * 110.38697 * 224.74577 * 29 28 27 48 48 H 1.09001 * 110.38647 * 102.37292 * 29 28 27 49 49 H 1.09002 * 111.03580 * 334.47177 * 30 2 1 50 50 H 1.08997 * 111.03952 * 98.41167 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4131 0.0000 4 8 2.7909 1.7865 -0.8880 5 7 1.7036 2.2617 0.9866 6 6 2.2125 3.6355 0.9863 7 1 2.3555 3.9946 -0.0328 8 6 3.5276 3.7308 1.7882 9 7 3.4881 4.9917 2.5433 10 6 4.4602 5.4420 3.3960 11 1 4.3767 6.4229 3.8403 12 6 5.5530 4.6380 3.6895 13 7 5.7275 3.5038 3.0448 14 14 6.7760 5.1657 4.9991 15 1 6.4144 4.5381 6.2956 16 1 8.1411 4.7346 4.6042 17 1 6.7447 6.6438 5.1389 18 6 2.2290 5.6913 2.2294 19 6 1.2584 4.5745 1.7706 20 1 0.8208 4.0606 2.6264 21 6 0.1847 5.1285 0.8698 22 6 -1.1464 4.8779 1.1461 23 6 -2.1314 5.3864 0.3202 24 6 -1.7852 6.1450 -0.7823 25 6 -0.4541 6.3956 -1.0586 26 6 0.5309 5.8867 -0.2329 27 6 2.0588 -0.7574 1.1958 28 6 3.0341 -1.5545 0.8536 29 6 3.3187 -1.4612 -0.6274 30 6 2.0688 -0.7742 -1.2253 31 1 -0.3632 0.5028 -0.8963 32 1 -0.3633 -1.0276 0.0126 33 1 -0.3633 0.5247 0.8836 34 1 1.1144 1.9629 1.6969 35 1 3.6040 2.8889 2.4763 36 1 4.3783 3.7306 1.1068 37 1 6.4909 2.9418 3.2501 38 1 2.3852 6.4116 1.4263 39 1 1.8406 6.1902 3.1173 40 1 -1.4168 4.2848 2.0073 41 1 -3.1713 5.1910 0.5362 42 1 -2.5545 6.5383 -1.4303 43 1 -0.1836 6.9880 -1.9201 44 1 1.5709 6.0817 -0.4492 45 1 1.6798 -0.6526 2.2017 46 1 3.5680 -2.1959 1.5391 47 1 3.4447 -2.4567 -1.0533 48 1 4.2073 -0.8557 -0.8059 49 1 1.3446 -1.5117 -1.5715 50 1 2.3446 -0.0917 -2.0291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086603991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = 31.543371 kcal Electronic energy + Delta-G solvation = -30490.110537 eV Core-core repulsion = 26675.825021 eV Total energy + Delta-G solvation = -3814.285516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.43439 -39.42711 -37.74309 -36.69612 -33.91275 -32.76844 -31.40495 -30.94981 -30.71142 -28.92503 -28.06349 -26.99780 -25.07976 -24.49301 -22.74696 -22.39225 -21.60854 -20.11199 -19.88832 -19.57803 -18.57443 -17.14292 -16.75244 -16.65339 -15.89503 -15.36832 -15.11780 -14.74686 -14.63712 -14.26960 -14.11442 -13.75497 -13.52861 -13.21922 -13.06699 -12.86825 -12.73087 -12.43014 -12.27602 -12.10302 -12.06978 -11.84659 -11.78060 -11.33883 -11.14565 -11.09266 -11.07471 -10.96794 -10.89316 -10.77902 -10.73047 -10.38011 -10.09475 -9.95628 -9.76197 -9.67376 -8.78098 -8.76077 -8.66049 -8.58348 -8.24663 -6.85315 -5.71676 -3.06137 1.51456 1.55177 2.24179 3.10544 3.39789 3.44986 3.47553 3.59530 3.93000 4.48546 4.51332 4.67198 4.89581 4.92321 5.00109 5.07576 5.10930 5.25287 5.26190 5.31430 5.41856 5.46262 5.54345 5.59546 5.63398 5.67446 5.70919 5.73762 5.76670 5.81542 5.86276 5.93921 6.05506 6.13625 6.16512 6.17513 6.23547 6.33536 6.36319 6.52404 6.55604 6.59591 6.66302 6.73243 6.82168 6.90613 6.98090 7.16217 7.53584 7.60384 7.83891 7.96586 8.23373 8.66545 9.19510 9.80161 10.44892 11.39012 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.005369 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4180.208071 B = 5214.127005 C = 8673.519008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C 0.531 3.469 4 O -0.538 6.538 5 N -0.708 5.708 6 C 0.128 3.872 7 H 0.090 0.910 8 C 0.172 3.828 9 N -0.604 5.604 10 C -0.232 4.232 11 H 0.079 0.921 12 C -0.005 4.005 13 N -0.915 5.915 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.147 3.853 19 C -0.075 4.075 20 H 0.085 0.915 21 C -0.056 4.056 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.161 4.161 28 C -0.147 4.147 29 C -0.103 4.103 30 C -0.107 4.107 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.688 -6.132 -6.507 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C 0.317 3.683 4 O -0.415 6.415 5 N -0.357 5.357 6 C 0.023 3.977 7 H 0.108 0.892 8 C 0.047 3.953 9 N -0.330 5.330 10 C -0.360 4.360 11 H 0.097 0.903 12 C -0.201 4.201 13 N -0.562 5.562 14 Si 0.740 3.260 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.020 3.980 19 C -0.095 4.095 20 H 0.104 0.896 21 C -0.056 4.056 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.180 4.180 28 C -0.165 4.165 29 C -0.140 4.140 30 C -0.144 4.144 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.918 -5.913 -7.075 17.538 hybrid contribution 0.456 0.096 1.240 1.325 sum -14.463 -5.818 -5.835 16.645 Atomic orbital electron populations 1.21770 0.92446 1.02471 1.02363 1.20631 0.96765 0.92792 0.95953 1.20156 0.80363 0.86311 0.81504 1.90667 1.36242 1.77478 1.37091 1.45827 1.50567 1.12378 1.26929 1.22487 0.95203 0.79549 1.00429 0.89205 1.21511 0.91016 0.89484 0.93334 1.44408 1.16942 1.20403 1.51256 1.19042 0.99005 0.99699 1.18296 0.90271 1.24838 0.98673 0.96867 0.99762 1.69990 1.30422 1.13398 1.42388 0.86135 0.80548 0.77765 0.81552 1.21637 1.21764 1.20584 1.21607 0.86111 0.92598 0.97683 1.21680 0.93538 0.97858 0.96454 0.89632 1.19811 0.93912 0.96569 0.95342 1.21018 0.92311 1.00601 0.99756 1.21047 0.98897 0.98560 0.95525 1.21053 0.96153 0.99933 0.97958 1.21112 0.92994 1.00072 0.99460 1.21120 0.99811 0.97359 0.94571 1.22998 0.99351 0.97923 0.97685 1.23352 0.96875 0.98960 0.97318 1.21403 0.99196 1.00576 0.92813 1.22453 0.96693 0.98568 0.96703 0.92077 0.91576 0.92159 0.77181 0.92830 0.93497 0.93711 0.95693 0.93686 0.86404 0.86569 0.86663 0.86394 0.85778 0.85411 0.85581 0.91242 0.89978 0.90825 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.39 37.16 0.31 -1.05 16 2 C -0.06 -0.76 0.74 -155.75 -0.12 -0.88 16 3 C 0.53 9.12 6.54 -10.99 -0.07 9.05 16 4 O -0.54 -11.38 15.11 5.55 0.08 -11.30 16 5 N -0.71 -11.63 4.97 -52.03 -0.26 -11.89 16 6 C 0.13 2.46 2.73 -66.09 -0.18 2.28 16 7 H 0.09 1.86 6.61 -51.93 -0.34 1.52 16 8 C 0.17 4.23 5.13 -3.06 -0.02 4.22 16 9 N -0.60 -15.22 3.39 -170.07 -0.58 -15.80 16 10 C -0.23 -6.44 10.26 -15.06 -0.15 -6.59 16 11 H 0.08 2.12 7.84 -52.48 -0.41 1.70 16 12 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 13 N -0.92 -27.17 10.36 55.49 0.57 -26.60 16 14 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.15 2.97 6.64 -2.53 -0.02 2.95 16 19 C -0.08 -1.27 2.89 -89.62 -0.26 -1.53 16 20 H 0.09 1.37 7.83 -51.93 -0.41 0.96 16 21 C -0.06 -0.83 5.00 -104.63 -0.52 -1.35 16 22 C -0.12 -1.52 9.69 -39.58 -0.38 -1.90 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 26 C -0.11 -1.64 8.31 -39.58 -0.33 -1.97 16 27 C -0.16 -2.05 9.37 -35.70 -0.33 -2.39 16 28 C -0.15 -1.86 10.77 -35.69 -0.38 -2.25 16 29 C -0.10 -1.30 6.81 -26.82 -0.18 -1.48 16 30 C -0.11 -1.34 6.03 -25.01 -0.15 -1.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 34 H 0.39 5.46 7.89 -40.82 -0.32 5.13 16 35 H 0.05 1.45 7.18 -51.93 -0.37 1.08 16 36 H 0.05 1.35 7.61 -51.93 -0.40 0.96 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.03 0.51 6.64 -51.93 -0.35 0.16 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 1.30 7.99 -52.48 -0.42 0.88 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.94 7.00 -52.49 -0.37 1.57 16 45 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 50 H 0.09 1.29 6.94 -51.93 -0.36 0.93 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -32.74 397.89 -11.19 -43.93 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.91 Total: 8.80 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.08 Total: -10.25 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.26 Total: -54.28 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.74 -11.19 -43.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086603991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.475 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds