Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51582 * 135.77630 * 2 1 4 4 C 1.53841 * 86.75411 * 154.84404 * 3 2 1 5 5 C 1.53008 * 113.65781 * 270.22089 * 4 3 2 6 6 C 1.50700 * 113.65982 * 139.26882 * 4 3 2 7 7 O 1.21282 * 119.99955 * 1.66545 * 6 4 3 8 8 N 1.34776 * 119.99770 * 181.66387 * 6 4 3 9 9 C 1.46507 * 119.99691 * 180.02562 * 8 6 4 10 10 H 1.08993 * 110.64229 * 31.85775 * 9 8 6 11 11 C 1.54338 * 110.99855 * 268.78133 * 9 8 6 12 12 N 1.47024 * 107.26406 * 219.60294 * 11 9 8 13 13 C 1.36936 * 125.64802 * 178.85276 * 12 11 9 14 14 H 1.07997 * 120.00015 * 205.70062 * 13 12 11 15 15 C 1.38810 * 119.99782 * 25.69915 * 13 12 11 16 16 N 1.31628 * 119.99789 * 214.47366 * 15 13 12 17 17 Si 1.86792 * 120.00337 * 34.48312 * 15 13 12 18 18 H 1.48500 * 109.47151 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47142 * 239.99823 * 17 15 13 20 20 H 1.48508 * 109.47417 * 119.99705 * 17 15 13 21 21 C 1.47425 * 108.70208 * 358.58720 * 12 11 9 22 22 C 1.54905 * 104.83192 * 24.35539 * 21 12 11 23 23 H 1.09003 * 111.00493 * 81.10782 * 22 21 12 24 24 C 1.50701 * 111.00322 * 204.91588 * 22 21 12 25 25 C 1.38236 * 120.00273 * 58.27657 * 24 22 21 26 26 C 1.38230 * 120.00289 * 179.76858 * 25 24 22 27 27 C 1.38241 * 120.00053 * 0.50123 * 26 25 24 28 28 C 1.38234 * 119.99602 * 359.74831 * 27 26 25 29 29 C 1.38232 * 120.00323 * 0.02562 * 28 27 26 30 30 C 1.51767 * 135.75463 * 179.88622 * 2 1 3 31 31 H 1.07993 * 120.00141 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99279 * 179.97438 * 1 2 3 33 33 H 1.08997 * 113.66712 * 40.38043 * 3 2 1 34 34 H 1.08998 * 113.75422 * 269.31574 * 3 2 1 35 35 H 1.08996 * 109.47066 * 298.33409 * 5 4 3 36 36 H 1.08998 * 109.46579 * 58.33366 * 5 4 3 37 37 H 1.08994 * 109.47179 * 178.33247 * 5 4 3 38 38 H 0.97004 * 120.00597 * 0.02562 * 8 6 4 39 39 H 1.08994 * 109.99330 * 100.12823 * 11 9 8 40 40 H 1.08998 * 109.78030 * 338.95646 * 11 9 8 41 41 H 0.97000 * 119.99944 * 5.09675 * 16 15 13 42 42 H 1.08996 * 110.36742 * 143.19781 * 21 12 11 43 43 H 1.09008 * 110.36423 * 265.40728 * 21 12 11 44 44 H 1.08000 * 119.99722 * 359.97438 * 25 24 22 45 45 H 1.08000 * 120.00165 * 180.23103 * 26 25 24 46 46 H 1.07994 * 119.99967 * 179.73000 * 27 26 25 47 47 H 1.08001 * 120.00124 * 179.97438 * 28 27 26 48 48 H 1.07997 * 120.00307 * 179.97438 * 29 28 27 49 49 H 1.09003 * 113.67068 * 90.72221 * 30 2 1 50 50 H 1.09008 * 113.71925 * 319.60257 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3036 0.0002 0.6529 5 6 3.2461 0.0017 2.1819 6 6 4.7130 0.0002 0.1195 7 8 5.0425 0.8080 -0.7230 8 7 5.6073 -0.8974 0.5787 9 6 6.9777 -0.8970 0.0606 10 1 7.2875 0.1135 -0.2057 11 6 7.1103 -1.8409 -1.1533 12 7 8.4035 -2.5296 -1.0312 13 6 8.8916 -3.4704 -1.8984 14 1 9.6044 -4.2047 -1.5532 15 6 8.4703 -3.4801 -3.2209 16 7 8.3377 -4.6226 -3.8610 17 14 8.0918 -1.8720 -4.0926 18 1 8.3178 -0.7385 -3.1602 19 1 6.6750 -1.8715 -4.5373 20 1 8.9812 -1.7274 -5.2730 21 6 9.0904 -2.0350 0.1758 22 6 7.9554 -1.5167 1.0937 23 1 7.4846 -2.3377 1.6345 24 6 8.4682 -0.4691 2.0479 25 6 9.0616 0.6799 1.5592 26 6 9.5277 1.6430 2.4343 27 6 9.4099 1.4526 3.7985 28 6 8.8212 0.3013 4.2872 29 6 8.3509 -0.6597 3.4120 30 6 2.3972 -1.0589 0.0021 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 2.1795 1.9074 0.6468 34 1 2.7193 1.3549 -0.9976 35 1 3.5888 0.9658 2.5574 36 1 2.2201 -0.1710 2.5070 37 1 3.8882 -0.7887 2.5704 38 1 5.3437 -1.5438 1.2523 39 1 7.0829 -1.2648 -2.0781 40 1 6.2998 -2.5698 -1.1440 41 1 8.4625 -5.4606 -3.3885 42 1 9.6321 -2.8457 0.6631 43 1 9.7726 -1.2246 -0.0813 44 1 9.1579 0.8265 0.4935 45 1 9.9879 2.5423 2.0524 46 1 9.7780 2.2031 4.4822 47 1 8.7295 0.1523 5.3530 48 1 7.8913 -1.5593 3.7939 49 1 2.7195 -1.3572 -0.9955 50 1 2.1811 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086608041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = 58.543717 kcal Electronic energy + Delta-G solvation = -30244.292834 eV Core-core repulsion = 26431.178141 eV Total energy + Delta-G solvation = -3813.114693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73044 -39.63235 -38.14490 -37.05649 -34.11640 -32.88899 -31.62030 -31.39802 -30.84666 -28.47011 -27.87255 -27.49455 -26.06547 -24.38202 -23.46842 -22.67859 -21.70721 -20.43411 -20.15572 -19.31931 -17.89644 -17.53651 -17.11053 -16.70008 -16.19685 -15.44088 -15.24696 -15.00647 -14.75305 -14.59022 -14.39174 -14.12236 -13.77763 -13.59343 -13.40199 -13.27038 -12.87694 -12.72123 -12.65954 -12.54210 -12.29259 -12.17847 -12.01403 -11.76182 -11.50462 -11.43511 -11.19864 -11.05652 -10.90489 -10.81051 -10.52119 -10.40247 -10.37398 -9.72256 -9.54270 -9.27640 -9.24905 -8.92754 -8.85930 -8.50107 -8.30792 -7.01364 -6.39969 -3.28001 1.41029 1.45809 2.04099 2.74347 3.29575 3.53542 3.57996 3.73164 3.82596 4.15668 4.31107 4.35845 4.63762 4.67722 4.73883 4.85051 4.89350 5.01469 5.06785 5.13329 5.17224 5.20270 5.40278 5.43938 5.46886 5.49926 5.51037 5.56564 5.58025 5.58727 5.64117 5.71644 5.76826 5.88911 5.93969 5.94615 6.04599 6.06489 6.12689 6.23727 6.42827 6.45767 6.50129 6.56364 6.60141 6.68516 6.73930 6.81175 6.90469 7.06005 7.65852 7.85209 8.34738 8.38927 8.96568 9.56175 10.28724 11.02615 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006724 B = 0.005296 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4163.443721 B = 5285.340967 C = 8454.469260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C -0.081 4.081 4 C -0.106 4.106 5 C -0.124 4.124 6 C 0.529 3.471 7 O -0.537 6.537 8 N -0.712 5.712 9 C 0.141 3.859 10 H 0.098 0.902 11 C 0.116 3.884 12 N -0.600 5.600 13 C -0.344 4.344 14 H 0.071 0.929 15 C 0.006 3.994 16 N -0.898 5.898 17 Si 1.029 2.971 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.296 1.296 21 C 0.140 3.860 22 C -0.072 4.072 23 H 0.088 0.912 24 C -0.059 4.059 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.117 4.117 30 C -0.090 4.090 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.268 0.732 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.099 0.901 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 10.645 17.413 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.181 4.181 6 C 0.315 3.685 7 O -0.413 6.413 8 N -0.362 5.362 9 C 0.036 3.964 10 H 0.116 0.884 11 C -0.010 4.010 12 N -0.327 5.327 13 C -0.471 4.471 14 H 0.089 0.911 15 C -0.198 4.198 16 N -0.535 5.535 17 Si 0.859 3.141 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.223 1.223 21 C 0.014 3.986 22 C -0.092 4.092 23 H 0.107 0.893 24 C -0.059 4.059 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.148 4.148 28 C -0.140 4.140 29 C -0.135 4.135 30 C -0.127 4.127 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.233 0.767 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.117 0.883 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.742 11.772 15.278 21.607 hybrid contribution 0.394 -0.940 1.716 1.996 sum -9.348 10.832 16.993 22.214 Atomic orbital electron populations 1.22842 0.93345 1.02080 1.02940 1.22849 0.93833 0.98097 0.99607 1.22235 0.91949 0.95359 1.02264 1.21964 0.91486 1.00264 0.97165 1.21551 1.02722 1.02669 0.91164 1.20231 0.86291 0.80414 0.81572 1.90699 1.79392 1.39049 1.32147 1.45927 1.11210 1.35525 1.43549 1.22123 0.79962 1.00671 0.93674 0.88420 1.21987 0.89826 0.93801 0.95408 1.44637 1.14060 1.47110 1.26929 1.19795 1.29731 1.06641 0.90901 0.91135 1.25999 0.97500 1.02976 0.93319 1.70874 1.43658 0.98023 1.40920 0.84381 0.76363 0.77545 0.75807 1.20362 1.22014 1.22338 1.21700 0.92352 0.96677 0.87872 1.21653 0.97478 0.95584 0.94483 0.89325 1.19744 0.97467 0.95023 0.93677 1.21112 0.97927 0.93615 1.00176 1.21119 0.99964 0.99038 0.93428 1.21077 1.00510 0.97826 0.95424 1.21059 0.99218 0.94402 0.99290 1.21017 1.00687 0.99204 0.92626 1.22356 0.92904 0.95698 1.01753 0.87677 0.87675 0.90474 0.87508 0.91674 0.91331 0.91826 0.76719 0.94404 0.94325 0.92228 0.93310 0.95450 0.85862 0.86289 0.86540 0.86451 0.86304 0.88275 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 14.72 29.01 0.43 -1.11 16 2 C -0.14 -1.48 6.60 -100.19 -0.66 -2.14 16 3 C -0.08 -0.92 6.97 -27.01 -0.19 -1.11 16 4 C -0.11 -1.21 1.26 -154.87 -0.19 -1.40 16 5 C -0.12 -1.09 8.99 37.16 0.33 -0.75 16 6 C 0.53 8.07 6.92 -10.99 -0.08 7.99 16 7 O -0.54 -10.37 15.55 5.56 0.09 -10.29 16 8 N -0.71 -10.29 5.01 -52.02 -0.26 -10.55 16 9 C 0.14 2.47 2.70 -66.09 -0.18 2.29 16 10 H 0.10 1.86 6.19 -51.93 -0.32 1.54 16 11 C 0.12 2.59 5.80 -3.06 -0.02 2.57 16 12 N -0.60 -14.55 3.06 -170.07 -0.52 -15.07 16 13 C -0.34 -9.74 10.24 -15.06 -0.15 -9.89 16 14 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 15 C 0.01 0.19 5.29 -17.43 -0.09 0.09 16 16 N -0.90 -27.70 13.70 55.49 0.76 -26.94 16 17 Si 1.03 26.99 26.22 -169.99 -4.46 22.53 16 18 H -0.28 -7.01 6.16 56.52 0.35 -6.67 16 19 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 21 C 0.14 2.77 6.65 -2.53 -0.02 2.75 16 22 C -0.07 -1.14 2.89 -89.63 -0.26 -1.40 16 23 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 24 C -0.06 -0.82 5.00 -104.62 -0.52 -1.34 16 25 C -0.11 -1.57 8.28 -39.58 -0.33 -1.90 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 28 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 29 C -0.12 -1.41 9.69 -39.58 -0.38 -1.79 16 30 C -0.09 -0.97 7.19 -26.92 -0.19 -1.17 16 31 H 0.11 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.11 1.41 7.44 -51.93 -0.39 1.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 37 H 0.06 0.50 7.12 -51.93 -0.37 0.13 16 38 H 0.40 4.62 7.55 -40.82 -0.31 4.32 16 39 H 0.04 0.94 3.83 -51.93 -0.20 0.74 16 40 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 41 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.55 7.05 -51.92 -0.37 0.19 16 44 H 0.12 1.86 7.01 -52.49 -0.37 1.49 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 1.21 7.99 -52.49 -0.42 0.79 16 49 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 50 H 0.08 0.75 8.10 -51.92 -0.42 0.33 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -33.25 398.65 -9.89 -43.15 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.81 Total: 4.84 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.70 Total: -13.69 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.02 Total: -52.55 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -4.46 Total: 22.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.25 -9.89 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086608041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.692 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds