Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51582 * 135.77630 * 2 1 4 4 C 1.53841 * 86.75411 * 154.84404 * 3 2 1 5 5 C 1.53008 * 113.65781 * 270.22089 * 4 3 2 6 6 C 1.50700 * 113.65982 * 139.26882 * 4 3 2 7 7 O 1.21282 * 119.99955 * 1.66545 * 6 4 3 8 8 N 1.34776 * 119.99770 * 181.66387 * 6 4 3 9 9 C 1.46507 * 119.99691 * 180.02562 * 8 6 4 10 10 H 1.08993 * 110.64229 * 31.85775 * 9 8 6 11 11 C 1.54338 * 110.99855 * 268.78133 * 9 8 6 12 12 N 1.47024 * 107.26406 * 219.60294 * 11 9 8 13 13 C 1.36936 * 125.64802 * 178.85276 * 12 11 9 14 14 H 1.07997 * 120.00015 * 205.70062 * 13 12 11 15 15 C 1.38810 * 119.99782 * 25.69915 * 13 12 11 16 16 N 1.31628 * 119.99789 * 214.47366 * 15 13 12 17 17 Si 1.86792 * 120.00337 * 34.48312 * 15 13 12 18 18 H 1.48500 * 109.47151 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47142 * 239.99823 * 17 15 13 20 20 H 1.48508 * 109.47417 * 119.99705 * 17 15 13 21 21 C 1.47425 * 108.70208 * 358.58720 * 12 11 9 22 22 C 1.54905 * 104.83192 * 24.35539 * 21 12 11 23 23 H 1.09003 * 111.00493 * 81.10782 * 22 21 12 24 24 C 1.50701 * 111.00322 * 204.91588 * 22 21 12 25 25 C 1.38236 * 120.00273 * 58.27657 * 24 22 21 26 26 C 1.38230 * 120.00289 * 179.76858 * 25 24 22 27 27 C 1.38241 * 120.00053 * 0.50123 * 26 25 24 28 28 C 1.38234 * 119.99602 * 359.74831 * 27 26 25 29 29 C 1.38232 * 120.00323 * 0.02562 * 28 27 26 30 30 C 1.51767 * 135.75463 * 179.88622 * 2 1 3 31 31 H 1.07993 * 120.00141 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99279 * 179.97438 * 1 2 3 33 33 H 1.08997 * 113.66712 * 40.38043 * 3 2 1 34 34 H 1.08998 * 113.75422 * 269.31574 * 3 2 1 35 35 H 1.08996 * 109.47066 * 298.33409 * 5 4 3 36 36 H 1.08998 * 109.46579 * 58.33366 * 5 4 3 37 37 H 1.08994 * 109.47179 * 178.33247 * 5 4 3 38 38 H 0.97004 * 120.00597 * 0.02562 * 8 6 4 39 39 H 1.08994 * 109.99330 * 100.12823 * 11 9 8 40 40 H 1.08998 * 109.78030 * 338.95646 * 11 9 8 41 41 H 0.97000 * 119.99944 * 5.09675 * 16 15 13 42 42 H 1.08996 * 110.36742 * 143.19781 * 21 12 11 43 43 H 1.09008 * 110.36423 * 265.40728 * 21 12 11 44 44 H 1.08000 * 119.99722 * 359.97438 * 25 24 22 45 45 H 1.08000 * 120.00165 * 180.23103 * 26 25 24 46 46 H 1.07994 * 119.99967 * 179.73000 * 27 26 25 47 47 H 1.08001 * 120.00124 * 179.97438 * 28 27 26 48 48 H 1.07997 * 120.00307 * 179.97438 * 29 28 27 49 49 H 1.09003 * 113.67068 * 90.72221 * 30 2 1 50 50 H 1.09008 * 113.71925 * 319.60257 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3036 0.0002 0.6529 5 6 3.2461 0.0017 2.1819 6 6 4.7130 0.0002 0.1195 7 8 5.0425 0.8080 -0.7230 8 7 5.6073 -0.8974 0.5787 9 6 6.9777 -0.8970 0.0606 10 1 7.2875 0.1135 -0.2057 11 6 7.1103 -1.8409 -1.1533 12 7 8.4035 -2.5296 -1.0312 13 6 8.8916 -3.4704 -1.8984 14 1 9.6044 -4.2047 -1.5532 15 6 8.4703 -3.4801 -3.2209 16 7 8.3377 -4.6226 -3.8610 17 14 8.0918 -1.8720 -4.0926 18 1 8.3178 -0.7385 -3.1602 19 1 6.6750 -1.8715 -4.5373 20 1 8.9812 -1.7274 -5.2730 21 6 9.0904 -2.0350 0.1758 22 6 7.9554 -1.5167 1.0937 23 1 7.4846 -2.3377 1.6345 24 6 8.4682 -0.4691 2.0479 25 6 9.0616 0.6799 1.5592 26 6 9.5277 1.6430 2.4343 27 6 9.4099 1.4526 3.7985 28 6 8.8212 0.3013 4.2872 29 6 8.3509 -0.6597 3.4120 30 6 2.3972 -1.0589 0.0021 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 2.1795 1.9074 0.6468 34 1 2.7193 1.3549 -0.9976 35 1 3.5888 0.9658 2.5574 36 1 2.2201 -0.1710 2.5070 37 1 3.8882 -0.7887 2.5704 38 1 5.3437 -1.5438 1.2523 39 1 7.0829 -1.2648 -2.0781 40 1 6.2998 -2.5698 -1.1440 41 1 8.4625 -5.4606 -3.3885 42 1 9.6321 -2.8457 0.6631 43 1 9.7726 -1.2246 -0.0813 44 1 9.1579 0.8265 0.4935 45 1 9.9879 2.5423 2.0524 46 1 9.7780 2.2031 4.4822 47 1 8.7295 0.1523 5.3530 48 1 7.8913 -1.5593 3.7939 49 1 2.7195 -1.3572 -0.9955 50 1 2.1811 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086608041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = 39.037558 kcal Electronic energy + Delta-G solvation = -30245.138685 eV Core-core repulsion = 26431.178141 eV Total energy + Delta-G solvation = -3813.960543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85022 -40.74445 -39.25093 -38.43729 -35.76380 -34.50407 -33.06476 -32.43742 -31.76792 -29.95514 -29.09254 -28.54495 -26.94023 -26.12965 -24.64964 -23.73588 -22.89069 -22.21402 -21.43903 -20.47719 -19.66751 -18.71255 -18.21025 -17.79736 -17.51677 -16.84523 -16.34179 -16.19641 -15.93859 -15.63448 -15.62949 -15.45709 -15.16881 -15.06778 -14.42391 -14.36038 -14.23963 -14.07805 -13.98408 -13.83641 -13.42517 -13.35422 -13.16124 -12.94039 -12.87473 -12.75797 -12.62091 -12.38798 -12.19139 -11.88183 -11.84968 -11.80718 -11.73119 -11.31721 -11.17373 -10.78390 -10.60682 -10.23966 -10.02160 -9.78002 -9.54003 -9.13219 -8.69360 -5.53479 0.45150 0.54081 1.29053 1.37642 1.39847 1.54197 1.60607 2.07343 2.43842 2.85715 2.86014 3.29115 3.31326 3.45831 3.55266 3.59258 3.72391 3.88400 3.92697 3.95243 4.10459 4.17636 4.18059 4.29742 4.37190 4.41960 4.43142 4.65682 4.67092 4.73386 4.75294 4.76410 4.77753 4.85557 4.88282 4.92011 4.94901 5.00069 5.09667 5.15316 5.18142 5.20938 5.27729 5.41254 5.55681 5.60748 5.65707 5.67882 5.76577 5.98939 6.10998 6.15621 6.49756 6.72710 7.19045 7.40957 8.12380 8.71523 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006724 B = 0.005296 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4163.443721 B = 5285.340967 C = 8454.469260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.159 4.159 3 C -0.086 4.086 4 C -0.099 4.099 5 C -0.118 4.118 6 C 0.524 3.476 7 O -0.584 6.584 8 N -0.699 5.699 9 C 0.156 3.844 10 H 0.081 0.919 11 C 0.114 3.886 12 N -0.616 5.616 13 C -0.332 4.332 14 H 0.048 0.952 15 C -0.038 4.038 16 N -0.930 5.930 17 Si 1.067 2.933 18 H -0.271 1.271 19 H -0.295 1.295 20 H -0.289 1.289 21 C 0.135 3.865 22 C -0.048 4.048 23 H 0.109 0.891 24 C -0.076 4.076 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.118 4.118 29 C -0.115 4.115 30 C -0.090 4.090 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.415 0.585 39 H 0.011 0.989 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.142 0.858 49 H 0.073 0.927 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 11.817 21.494 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.102 4.102 5 C -0.175 4.175 6 C 0.312 3.688 7 O -0.463 6.463 8 N -0.350 5.350 9 C 0.050 3.950 10 H 0.099 0.901 11 C -0.012 4.012 12 N -0.343 5.343 13 C -0.460 4.460 14 H 0.066 0.934 15 C -0.237 4.237 16 N -0.570 5.570 17 Si 0.895 3.105 18 H -0.197 1.197 19 H -0.223 1.223 20 H -0.216 1.216 21 C 0.010 3.990 22 C -0.067 4.067 23 H 0.127 0.873 24 C -0.076 4.076 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.133 4.133 30 C -0.127 4.127 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.029 0.971 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.118 0.882 45 H 0.149 0.851 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.159 0.841 49 H 0.092 0.908 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.350 12.945 19.412 25.947 hybrid contribution 0.906 -1.274 0.528 1.650 sum -10.445 11.671 19.940 25.356 Atomic orbital electron populations 1.23149 0.92727 1.03480 0.99760 1.22694 0.94097 0.96783 1.02358 1.22179 0.92805 0.96302 1.01051 1.22058 0.88329 1.00688 0.99098 1.21572 1.04259 1.03266 0.88435 1.21057 0.87699 0.79381 0.80656 1.90677 1.80453 1.40940 1.34265 1.45778 1.09896 1.35853 1.43520 1.21708 0.82231 0.98477 0.92595 0.90119 1.22000 0.88590 0.93912 0.96747 1.44699 1.15408 1.46758 1.27427 1.19715 1.28226 1.06610 0.91478 0.93387 1.26742 0.98356 1.04249 0.94403 1.70935 1.46625 0.98162 1.41266 0.83819 0.76096 0.75255 0.75376 1.19717 1.22275 1.21605 1.21841 0.93754 0.96528 0.86832 1.21426 0.95060 0.96533 0.93704 0.87336 1.19563 0.99192 0.94521 0.94346 1.21096 0.99526 0.94913 0.99551 1.21332 0.99953 0.99058 0.94141 1.21470 0.99290 0.98523 0.95060 1.21461 0.97765 0.93570 1.00800 1.21266 1.00160 1.00328 0.91505 1.22306 0.93056 0.96530 1.00810 0.86280 0.86174 0.89201 0.90423 0.91630 0.89507 0.90476 0.74690 0.97105 0.95326 0.93126 0.93152 0.95778 0.88164 0.85055 0.83697 0.83226 0.84067 0.90822 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 14.72 67.78 1.00 -1.24 16 2 C -0.16 -2.98 6.60 -15.93 -0.11 -3.08 16 3 C -0.09 -1.91 6.97 30.41 0.21 -1.70 16 4 C -0.10 -2.14 1.26 -52.42 -0.07 -2.20 16 5 C -0.12 -1.71 8.99 71.98 0.65 -1.06 16 6 C 0.52 16.02 6.92 87.66 0.61 16.63 16 7 O -0.58 -23.50 15.55 -3.04 -0.05 -23.55 16 8 N -0.70 -19.77 5.01 -436.90 -2.19 -21.96 16 9 C 0.16 5.54 2.70 46.18 0.12 5.66 16 10 H 0.08 3.20 6.19 -2.39 -0.01 3.18 16 11 C 0.11 5.23 5.80 86.73 0.50 5.73 16 12 N -0.62 -30.63 3.06 -691.97 -2.12 -32.75 16 13 C -0.33 -19.44 10.24 84.03 0.86 -18.58 16 14 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 15 C -0.04 -2.31 5.29 84.86 0.45 -1.86 16 16 N -0.93 -59.39 13.70 21.65 0.30 -59.10 16 17 Si 1.07 56.97 26.22 68.60 1.80 58.77 16 18 H -0.27 -14.04 6.16 99.48 0.61 -13.43 16 19 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 20 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 21 C 0.14 5.41 6.65 86.85 0.58 5.99 16 22 C -0.05 -1.46 2.89 -10.15 -0.03 -1.49 16 23 H 0.11 2.88 7.83 -2.39 -0.02 2.87 16 24 C -0.08 -2.00 5.00 -19.86 -0.10 -2.10 16 25 C -0.13 -3.72 8.28 22.27 0.18 -3.53 16 26 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 27 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 28 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 29 C -0.11 -2.33 9.69 22.27 0.22 -2.11 16 30 C -0.09 -1.84 7.19 30.47 0.22 -1.62 16 31 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.08 2.17 7.44 -2.39 -0.02 2.15 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.99 7.70 -2.39 -0.02 0.97 16 37 H 0.08 0.90 7.12 -2.39 -0.02 0.89 16 38 H 0.42 8.78 7.55 -92.71 -0.70 8.08 16 39 H 0.01 0.58 3.83 -2.39 -0.01 0.57 16 40 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 41 H 0.26 16.41 8.73 -92.71 -0.81 15.60 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.02 1.00 7.05 -2.38 -0.02 0.98 16 44 H 0.10 3.18 7.01 -2.91 -0.02 3.16 16 45 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.14 2.21 7.99 -2.91 -0.02 2.18 16 49 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 50 H 0.10 1.63 8.10 -2.38 -0.02 1.61 16 Total: -1.00 -76.55 398.65 3.81 -72.73 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.10 Total: 18.94 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.97 Total: -13.09 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -4.01 Total: -113.80 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 56.97 SS G_CDS: 1.80 Total: 58.77 kcal Total: -76.55 3.81 -72.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086608041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.771 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds