Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 110.91431 * 2 1 4 4 O 1.21280 * 119.99806 * 239.29936 * 3 2 1 5 5 N 1.34776 * 119.99761 * 59.29533 * 3 2 1 6 6 C 1.46498 * 119.99748 * 180.02562 * 5 3 2 7 7 H 1.09009 * 110.78027 * 31.76419 * 6 5 3 8 8 C 1.54332 * 110.72314 * 268.52747 * 6 5 3 9 9 N 1.47015 * 107.26886 * 219.44298 * 8 6 5 10 10 C 1.36942 * 125.64991 * 178.90030 * 9 8 6 11 11 H 1.07991 * 120.00570 * 180.02562 * 10 9 8 12 12 C 1.38821 * 119.99601 * 0.04342 * 10 9 8 13 13 N 1.31619 * 119.99862 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 119.99940 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47241 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00039 * 14 12 10 17 17 H 1.48506 * 109.46949 * 240.00345 * 14 12 10 18 18 C 1.47431 * 108.70730 * 358.93962 * 9 8 6 19 19 C 1.54907 * 104.82927 * 24.12809 * 18 9 8 20 20 H 1.09002 * 111.00447 * 81.06654 * 19 18 9 21 21 C 1.50699 * 111.00099 * 204.88143 * 19 18 9 22 22 C 1.38234 * 120.00475 * 55.14571 * 21 19 18 23 23 C 1.38237 * 119.99987 * 179.76639 * 22 21 19 24 24 C 1.38227 * 120.00039 * 0.50442 * 23 22 21 25 25 C 1.38240 * 120.00136 * 359.75046 * 24 23 22 26 26 C 1.38235 * 119.99895 * 359.97438 * 25 24 23 27 27 C 1.54636 * 111.03974 * 123.96241 * 2 1 3 28 28 C 1.51211 * 104.67412 * 142.69345 * 27 2 1 29 29 C 1.30523 * 111.11050 * 343.56150 * 28 27 2 30 30 C 1.51104 * 111.10907 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47293 * 60.69915 * 1 2 3 32 32 H 1.08997 * 109.47021 * 180.70503 * 1 2 3 33 33 H 1.09001 * 109.46706 * 300.70168 * 1 2 3 34 34 H 0.96999 * 120.00398 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.88132 * 100.02200 * 8 6 5 36 36 H 1.08997 * 109.87557 * 338.85841 * 8 6 5 37 37 H 0.97000 * 120.00044 * 179.97438 * 13 12 10 38 38 H 1.08998 * 110.36348 * 265.28842 * 18 9 8 39 39 H 1.09004 * 110.36685 * 142.96854 * 18 9 8 40 40 H 1.07996 * 119.99530 * 359.97438 * 22 21 19 41 41 H 1.08007 * 119.99340 * 180.23034 * 23 22 21 42 42 H 1.08002 * 120.00151 * 179.72476 * 24 23 22 43 43 H 1.07997 * 119.99611 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.99551 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.38975 * 261.52336 * 27 2 1 46 46 H 1.09007 * 110.38557 * 23.89684 * 27 2 1 47 47 H 1.07995 * 124.43729 * 163.54179 * 28 27 2 48 48 H 1.08010 * 124.44465 * 179.97438 * 29 28 27 49 49 H 1.09004 * 110.38742 * 257.62551 * 30 29 28 50 50 H 1.08997 * 110.48388 * 135.29758 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4078 0.0000 4 8 2.7853 1.7828 -0.9031 5 7 1.7518 2.2500 1.0036 6 6 2.2743 3.6186 1.0033 7 1 2.3943 3.9865 -0.0158 8 6 3.6107 3.6931 1.7716 9 7 3.6033 4.9468 2.5395 10 6 4.6010 5.3785 3.3722 11 1 4.4998 6.3185 3.8942 12 6 5.7427 4.6080 3.5452 13 7 5.8664 3.4628 2.9084 14 14 7.1039 5.1972 4.6806 15 1 6.7244 6.5060 5.2708 16 1 7.3076 4.2045 5.7660 17 1 8.3623 5.3499 3.9069 18 6 2.3435 5.6618 2.2653 19 6 1.3503 4.5591 1.8212 20 1 0.9304 4.0412 2.6835 21 6 0.2587 5.1326 0.9548 22 6 0.5830 5.8478 -0.1828 23 6 -0.4185 6.3696 -0.9801 24 6 -1.7440 6.1851 -0.6342 25 6 -2.0683 5.4744 0.5063 26 6 -1.0669 4.9477 1.3006 27 6 2.0851 -0.8063 1.1971 28 6 3.3086 -1.5080 0.6518 29 6 3.3081 -1.5078 -0.6534 30 6 2.0853 -0.8059 -1.1970 31 1 -0.3634 0.5029 -0.8962 32 1 -0.3633 -1.0276 0.0126 33 1 -0.3633 0.5247 0.8837 34 1 1.1783 1.9499 1.7261 35 1 4.4431 3.6941 1.0681 36 1 3.6963 2.8438 2.4493 37 1 6.6643 2.9245 3.0290 38 1 2.4862 6.3885 1.4654 39 1 1.9834 6.1557 3.1678 40 1 1.6187 5.9959 -0.4504 41 1 -0.1651 6.9252 -1.8709 42 1 -2.5264 6.5966 -1.2547 43 1 -3.1039 5.3307 0.7767 44 1 -1.3203 4.3928 2.1917 45 1 2.3620 -0.1359 2.0107 46 1 1.3495 -1.5349 1.5379 47 1 4.0815 -1.9508 1.2624 48 1 4.0807 -1.9505 -1.2647 49 1 1.3495 -1.5342 -1.5378 50 1 2.3607 -0.1358 -2.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086608181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = 31.438987 kcal Electronic energy + Delta-G solvation = -30503.640580 eV Core-core repulsion = 26689.350538 eV Total energy + Delta-G solvation = -3814.290042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.42157 -39.42175 -37.73994 -36.70560 -33.92116 -32.79037 -31.62148 -30.95130 -30.71694 -28.36821 -27.89779 -27.00515 -25.57792 -24.60390 -22.84719 -22.52702 -21.68136 -20.11157 -19.88091 -18.91567 -18.75019 -17.12028 -16.73429 -16.63522 -15.86109 -15.45232 -15.13606 -14.76530 -14.62023 -14.39747 -13.99527 -13.77063 -13.27241 -13.20059 -12.99605 -12.77901 -12.68787 -12.64315 -12.40946 -12.18936 -12.08103 -12.04101 -11.96292 -11.29631 -11.22198 -11.10232 -11.07631 -11.03419 -10.92798 -10.78333 -10.63985 -10.36878 -10.07941 -9.93807 -9.76624 -9.35738 -8.80390 -8.78176 -8.65341 -8.62388 -8.25642 -6.85632 -5.70461 -3.06097 1.51114 1.54867 2.40756 3.04539 3.39746 3.45167 3.47975 3.53149 3.92647 4.46058 4.48436 4.67396 4.81828 4.90035 4.99630 5.10026 5.11660 5.25671 5.29282 5.33342 5.39641 5.47783 5.56499 5.59390 5.63631 5.69680 5.71725 5.75338 5.77057 5.78814 5.81031 5.91004 6.05275 6.07817 6.15675 6.16763 6.19489 6.24781 6.33223 6.54783 6.59376 6.64985 6.66020 6.73054 6.81667 6.97576 6.99975 7.15874 7.55985 7.57846 7.83873 7.96054 8.23417 8.66774 9.19960 9.80316 10.44428 11.39921 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006680 B = 0.005374 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4190.531051 B = 5208.594620 C = 8693.180759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C 0.531 3.469 4 O -0.535 6.535 5 N -0.710 5.710 6 C 0.128 3.872 7 H 0.090 0.910 8 C 0.173 3.827 9 N -0.604 5.604 10 C -0.231 4.231 11 H 0.080 0.920 12 C -0.006 4.006 13 N -0.917 5.917 14 Si 0.911 3.089 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.290 1.290 18 C 0.147 3.853 19 C -0.075 4.075 20 H 0.085 0.915 21 C -0.056 4.056 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.088 4.088 28 C -0.169 4.169 29 C -0.159 4.159 30 C -0.083 4.083 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.252 0.748 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.077 0.923 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 -5.855 -5.730 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C 0.316 3.684 4 O -0.411 6.411 5 N -0.360 5.360 6 C 0.023 3.977 7 H 0.108 0.892 8 C 0.048 3.952 9 N -0.330 5.330 10 C -0.359 4.359 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.564 5.564 14 Si 0.742 3.258 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.217 1.217 18 C 0.020 3.980 19 C -0.095 4.095 20 H 0.104 0.896 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.187 4.187 29 C -0.177 4.177 30 C -0.120 4.120 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.096 0.904 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.559 -5.631 -6.307 17.708 hybrid contribution 0.629 0.095 1.000 1.185 sum -14.930 -5.536 -5.307 16.784 Atomic orbital electron populations 1.21742 0.92089 1.02525 1.02576 1.21626 0.96625 0.92916 0.98065 1.20065 0.80192 0.86328 0.81779 1.90672 1.36794 1.77133 1.36547 1.45821 1.51763 1.12982 1.25396 1.22504 0.95224 0.79641 1.00322 0.89177 1.21507 0.90714 0.89484 0.93544 1.44418 1.16149 1.20363 1.52113 1.19088 0.94955 1.03503 1.18350 0.90230 1.24822 0.98310 0.96942 1.00202 1.69980 1.28203 1.13135 1.45110 0.86059 0.82076 0.77734 0.79970 1.20476 1.21780 1.21733 1.21595 0.85939 0.92566 0.97864 1.21684 0.93433 0.97765 0.96665 0.89634 1.19810 0.93934 0.96708 0.95176 1.21114 0.99723 0.97426 0.94567 1.21111 0.92929 1.00039 0.99550 1.21052 0.96252 1.00238 0.97551 1.21047 0.98838 0.98706 0.95443 1.21021 0.92241 1.00642 0.99803 1.21469 0.96000 0.98119 0.96911 1.23206 0.98310 1.00860 0.96284 1.23188 0.98260 1.00035 0.96195 1.21328 0.95390 0.97673 0.97629 0.91958 0.91514 0.91970 0.77194 0.93275 0.92989 0.93749 0.95670 0.93733 0.85811 0.86396 0.86663 0.86567 0.86383 0.90330 0.89906 0.85767 0.85922 0.90435 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.39 37.16 0.31 -0.98 16 2 C -0.09 -1.15 0.83 -153.95 -0.13 -1.28 16 3 C 0.53 9.08 6.52 -10.98 -0.07 9.01 16 4 O -0.54 -11.43 15.16 5.56 0.08 -11.35 16 5 N -0.71 -11.53 4.84 -52.02 -0.25 -11.78 16 6 C 0.13 2.44 2.73 -66.09 -0.18 2.26 16 7 H 0.09 1.86 6.41 -51.92 -0.33 1.53 16 8 C 0.17 4.24 5.12 -3.06 -0.02 4.23 16 9 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 10 C -0.23 -6.38 10.28 -15.05 -0.15 -6.54 16 11 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 12 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 13 N -0.92 -27.23 10.31 55.49 0.57 -26.66 16 14 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 C 0.15 2.96 6.65 -2.53 -0.02 2.95 16 19 C -0.08 -1.26 2.89 -89.63 -0.26 -1.52 16 20 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 21 C -0.06 -0.82 5.00 -104.62 -0.52 -1.34 16 22 C -0.11 -1.63 8.28 -39.58 -0.33 -1.96 16 23 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 24 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.12 -1.51 9.69 -39.58 -0.38 -1.89 16 27 C -0.09 -1.08 5.93 -26.77 -0.16 -1.24 16 28 C -0.17 -2.24 10.78 -35.64 -0.38 -2.63 16 29 C -0.16 -2.10 10.77 -35.70 -0.38 -2.48 16 30 C -0.08 -1.07 5.74 -26.84 -0.15 -1.22 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 33 H 0.06 0.55 7.64 -51.93 -0.40 0.15 16 34 H 0.39 5.33 8.04 -40.82 -0.33 5.00 16 35 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 36 H 0.05 1.40 7.27 -51.93 -0.38 1.02 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.51 6.83 -51.93 -0.35 0.16 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.12 1.94 7.02 -52.49 -0.37 1.57 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.29 7.98 -52.49 -0.42 0.87 16 45 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 46 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 47 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 49 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 50 H 0.09 1.30 6.97 -51.93 -0.36 0.94 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -33.00 397.64 -11.21 -44.21 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.88 Total: 8.73 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.12 Total: -10.53 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.26 Total: -54.20 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.00 -11.21 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086608181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.649 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds