Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38380 * 119.93119 * 2 1 4 4 C 1.38333 * 120.29577 * 179.97438 * 3 2 1 5 5 C 1.37978 * 120.14454 * 0.02562 * 4 3 2 6 6 C 1.39557 * 119.85189 * 359.97438 * 5 4 3 7 7 C 1.47848 * 120.14353 * 179.97438 * 6 5 4 8 8 O 1.21549 * 120.00222 * 215.24253 * 7 6 5 9 9 N 1.34776 * 119.99893 * 35.24654 * 7 6 5 10 10 C 1.49468 * 125.98555 * 185.46929 * 9 7 6 11 11 C 1.54009 * 102.63079 * 153.17614 * 10 9 7 12 12 H 1.09004 * 113.33150 * 285.81365 * 11 10 9 13 13 C 1.56801 * 96.35375 * 44.86261 * 11 10 9 14 14 H 1.09000 * 101.29992 * 58.27947 * 13 11 10 15 15 C 1.48264 * 102.90065 * 310.65370 * 13 11 10 16 16 C 1.49460 * 108.20115 * 167.71923 * 13 11 10 17 17 H 1.09002 * 114.15312 * 152.78312 * 16 13 11 18 18 C 1.55053 * 108.35002 * 24.54124 * 16 13 11 19 19 C 1.54279 * 108.48892 * 288.25087 * 18 16 13 20 20 C 1.55181 * 106.92854 * 34.47026 * 19 18 16 21 21 H 1.08995 * 112.51478 * 159.77401 * 20 19 18 22 22 C 1.53916 * 104.86338 * 282.79904 * 20 19 18 23 23 N 1.48846 * 106.34800 * 38.11105 * 22 20 19 24 24 C 1.36939 * 124.13187 * 215.91549 * 23 22 20 25 25 H 1.07999 * 119.99951 * 160.65180 * 24 23 22 26 26 C 1.38813 * 120.00133 * 340.65424 * 24 23 22 27 27 N 1.31617 * 119.99884 * 350.05117 * 26 24 23 28 28 Si 1.86801 * 119.99762 * 170.04978 * 26 24 23 29 29 H 1.48501 * 109.47436 * 60.00237 * 28 26 24 30 30 H 1.48504 * 109.46743 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47438 * 299.99821 * 28 26 24 32 32 C 1.37942 * 119.92552 * 180.23617 * 2 1 3 33 33 H 1.08994 * 109.47122 * 89.99649 * 1 2 3 34 34 H 1.08999 * 109.47058 * 209.99921 * 1 2 3 35 35 H 1.08998 * 109.46857 * 329.99849 * 1 2 3 36 36 H 1.08003 * 119.85056 * 359.95487 * 3 2 1 37 37 H 1.08007 * 119.92604 * 180.02562 * 4 3 2 38 38 H 1.08003 * 120.07539 * 179.97438 * 5 4 3 39 39 H 1.08999 * 110.78292 * 34.88313 * 10 9 7 40 40 H 1.09001 * 110.93801 * 271.53182 * 10 9 7 41 41 H 1.09001 * 110.54982 * 153.12469 * 15 13 11 42 42 H 1.09001 * 110.54813 * 275.93731 * 15 13 11 43 43 H 1.08999 * 109.63796 * 168.55105 * 18 16 13 44 44 H 1.08996 * 109.80447 * 48.04927 * 18 16 13 45 45 H 1.08997 * 109.95948 * 153.82602 * 19 18 16 46 46 H 1.09002 * 109.95770 * 275.11659 * 19 18 16 47 47 H 1.09004 * 110.07071 * 157.31125 * 22 20 19 48 48 H 1.08995 * 110.07523 * 278.79064 * 22 20 19 49 49 H 0.97004 * 119.99841 * 179.97438 * 27 26 24 50 50 H 1.07993 * 120.07220 * 0.03976 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0193 0.0005 6 6 3.5911 -1.1937 0.0005 7 6 4.3352 -2.4713 0.0000 8 8 3.8980 -3.4290 -0.6075 9 7 5.4983 -2.5740 0.6731 10 6 6.4135 -3.7557 0.6699 11 6 7.7848 -3.1204 0.9663 12 1 8.2018 -2.5780 0.1177 13 6 7.2962 -2.1867 2.1273 14 1 6.8812 -2.9135 2.8257 15 6 6.1063 -1.5244 1.5410 16 6 8.4997 -1.6435 2.8275 17 1 8.3393 -0.6772 3.3057 18 6 9.6928 -1.6677 1.8374 19 6 10.1264 -3.1336 1.6296 20 6 8.8399 -3.9989 1.6938 21 1 8.9682 -4.9732 1.2225 22 6 8.5061 -4.0993 3.1930 23 7 8.8216 -2.7695 3.7825 24 6 9.3408 -2.5887 5.0366 25 1 9.8315 -1.6603 5.2892 26 6 9.2365 -3.5985 5.9833 27 7 8.4748 -4.6456 5.7473 28 14 10.1773 -3.4713 7.5921 29 1 9.7486 -2.2507 8.3211 30 1 9.8975 -4.6685 8.4250 31 1 11.6330 -3.3935 7.3096 32 6 2.1952 -1.1955 -0.0049 33 1 -0.3633 0.0001 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5139 36 1 1.6539 2.1325 -0.0007 37 1 4.1136 2.1475 0.0009 38 1 5.3612 0.0275 0.0005 39 1 6.4149 -4.2411 -0.3060 40 1 6.1382 -4.4636 1.4517 41 1 5.4075 -1.2300 2.3241 42 1 6.4034 -0.6599 0.9472 43 1 10.5232 -1.0951 2.2504 44 1 9.3896 -1.2367 0.8832 45 1 10.6025 -3.2463 0.6555 46 1 10.8161 -3.4330 2.4188 47 1 7.4482 -4.3260 3.3263 48 1 9.1158 -4.8721 3.6611 49 1 8.4022 -5.3515 6.4087 50 1 1.6552 -2.1307 -0.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087330438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = 68.955736 kcal Electronic energy + Delta-G solvation = -30548.695855 eV Core-core repulsion = 26736.032661 eV Total energy + Delta-G solvation = -3812.663194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16518 -39.85276 -38.26501 -36.01650 -33.30572 -32.93338 -31.42141 -31.00400 -30.08022 -29.67856 -27.87557 -26.93741 -25.81132 -24.41087 -22.64447 -21.92702 -21.78607 -21.05082 -20.35726 -19.37000 -17.41440 -17.05622 -16.79112 -16.41238 -16.08760 -15.52384 -15.20682 -14.85603 -14.54928 -14.31936 -14.25164 -14.03869 -13.90344 -13.57811 -13.14137 -12.91723 -12.65589 -12.45767 -12.23982 -12.16761 -12.02845 -11.71646 -11.63775 -11.39489 -11.31486 -11.20917 -11.07489 -10.90752 -10.81254 -10.58878 -10.36295 -10.16892 -10.04626 -9.76590 -9.50014 -9.32402 -9.17460 -9.09949 -8.87169 -8.48847 -8.46672 -6.78052 -5.78348 -3.15097 0.82839 1.19092 2.80271 2.97255 3.37123 3.42804 3.43334 3.68030 4.33447 4.42011 4.58065 4.66435 4.70096 4.85392 4.95765 5.08093 5.12630 5.18416 5.31590 5.35964 5.39066 5.44155 5.48566 5.55979 5.57758 5.68047 5.72804 5.75502 5.76883 5.86130 5.88996 5.94403 6.06718 6.11568 6.16126 6.21467 6.28308 6.29015 6.33137 6.35955 6.40788 6.45055 6.68874 6.74057 6.75269 6.88888 7.05635 7.10256 7.33549 7.57701 7.61560 7.74998 8.21271 8.22899 9.12426 9.73443 10.42233 11.32342 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003002 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.731801 B = 9326.405865 C = 9805.941640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.102 4.102 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.118 4.118 7 C 0.572 3.428 8 O -0.545 6.545 9 N -0.616 5.616 10 C 0.116 3.884 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.161 4.161 14 H 0.097 0.903 15 C 0.131 3.869 16 C 0.186 3.814 17 H 0.078 0.922 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.107 4.107 21 H 0.073 0.927 22 C 0.183 3.817 23 N -0.599 5.599 24 C -0.233 4.233 25 H 0.070 0.930 26 C -0.003 4.003 27 N -0.914 5.914 28 Si 0.906 3.094 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.285 1.285 32 C -0.068 4.068 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.039 0.961 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.081 0.919 49 H 0.254 0.746 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 10.277 -12.485 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.361 3.639 8 O -0.424 6.424 9 N -0.349 5.349 10 C -0.005 4.005 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.181 4.181 14 H 0.115 0.885 15 C 0.009 3.991 16 C 0.080 3.920 17 H 0.096 0.904 18 C -0.162 4.162 19 C -0.132 4.132 20 C -0.127 4.127 21 H 0.091 0.909 22 C 0.058 3.942 23 N -0.325 5.325 24 C -0.362 4.362 25 H 0.088 0.912 26 C -0.201 4.201 27 N -0.560 5.560 28 Si 0.737 3.263 29 H -0.211 1.211 30 H -0.217 1.217 31 H -0.212 1.212 32 C -0.087 4.087 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.043 0.957 48 H 0.099 0.901 49 H 0.064 0.936 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.937 9.585 -12.616 18.191 hybrid contribution 0.431 0.025 0.982 1.073 sum -8.506 9.610 -11.634 17.322 Atomic orbital electron populations 1.20790 0.90787 1.02980 1.02452 1.19871 0.96353 0.92807 1.00561 1.21207 0.94358 0.97523 0.98951 1.21104 0.94206 0.98026 1.00686 1.21649 1.00743 0.91483 0.97646 1.19904 0.94176 0.93126 1.04840 1.17968 0.79639 0.87570 0.78689 1.90764 1.67469 1.39236 1.44892 1.49601 1.20618 1.17810 1.46912 1.22364 0.88422 0.87683 1.01990 1.23452 0.93389 0.98029 0.97525 0.89523 1.22041 0.95981 1.00874 0.99211 0.88532 1.20977 0.94949 0.90231 0.92960 1.20766 0.88869 0.92695 0.89679 0.90381 1.22650 0.99057 0.96532 0.97948 1.21957 0.96782 0.95040 0.99381 1.22813 0.94399 0.96723 0.98787 0.90885 1.21231 0.98296 0.88533 0.86094 1.46051 1.74148 0.99095 1.13160 1.19048 1.28418 1.01678 0.87070 0.91194 1.24938 0.99175 0.98311 0.97636 1.69927 1.40165 1.10614 1.35341 0.86300 0.79658 0.76889 0.83470 1.21113 1.21731 1.21195 1.21086 0.92482 0.98251 0.96868 0.91071 0.91332 0.91408 0.85796 0.85395 0.84658 0.90804 0.90546 0.90977 0.91488 0.92901 0.93648 0.94198 0.91120 0.95689 0.90082 0.93635 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.10 -0.98 5.87 -104.68 -0.61 -1.59 16 3 C -0.10 -0.94 9.69 -39.49 -0.38 -1.32 16 4 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 5 C -0.10 -1.11 8.57 -39.19 -0.34 -1.44 16 6 C -0.12 -1.61 5.59 -104.97 -0.59 -2.20 16 7 C 0.57 9.40 7.54 -12.33 -0.09 9.30 16 8 O -0.54 -10.60 17.17 5.32 0.09 -10.51 16 9 N -0.62 -9.59 3.42 -172.25 -0.59 -10.18 16 10 C 0.12 1.85 6.42 -1.86 -0.01 1.84 16 11 C -0.10 -1.61 2.81 -86.78 -0.24 -1.86 16 12 H 0.09 1.25 6.83 -51.93 -0.35 0.90 16 13 C -0.16 -2.67 2.44 -92.62 -0.23 -2.90 16 14 H 0.10 1.97 4.29 -51.93 -0.22 1.75 16 15 C 0.13 1.86 5.32 -4.88 -0.03 1.83 16 16 C 0.19 3.39 4.61 -65.99 -0.30 3.09 16 17 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.12 -1.98 5.61 -24.98 -0.14 -2.12 16 19 C -0.09 -1.58 5.56 -24.91 -0.14 -1.72 16 20 C -0.11 -1.85 3.91 -87.73 -0.34 -2.20 16 21 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 22 C 0.18 4.03 4.07 -2.27 -0.01 4.02 16 23 N -0.60 -13.69 2.22 -160.32 -0.36 -14.05 16 24 C -0.23 -6.04 10.13 -15.06 -0.15 -6.19 16 25 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 26 C 0.00 -0.08 5.28 -17.43 -0.09 -0.18 16 27 N -0.91 -25.69 10.84 55.49 0.60 -25.09 16 28 Si 0.91 21.32 29.57 -169.99 -5.03 16.29 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 32 C -0.07 -0.85 9.26 -39.18 -0.36 -1.22 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.14 1.41 5.18 -52.48 -0.27 1.14 16 39 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.08 1.32 7.57 -51.93 -0.39 0.92 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.80 5.70 -51.93 -0.30 0.50 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.64 7.00 -51.93 -0.36 0.27 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.38 7.79 -51.93 -0.40 0.97 16 47 H 0.03 0.61 6.20 -51.93 -0.32 0.29 16 48 H 0.08 2.05 6.70 -51.93 -0.35 1.70 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.13 1.63 8.00 -52.49 -0.42 1.21 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -30.16 377.93 -11.27 -41.43 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.59 Total: 3.30 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -4.10 Total: -6.89 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.34 Total: -49.32 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.16 -11.27 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087330438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.383 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds