Wall clock time and date at job start Sat Apr 11 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38374 * 119.92662 * 2 1 4 4 C 1.38344 * 120.29143 * 180.02562 * 3 2 1 5 5 C 1.37986 * 120.14146 * 359.69836 * 4 3 2 6 6 C 1.39557 * 119.85121 * 0.57137 * 5 4 3 7 7 C 1.47845 * 120.14195 * 179.72561 * 6 5 4 8 8 O 1.21556 * 120.00007 * 195.91239 * 7 6 5 9 9 N 1.34777 * 119.99983 * 15.91334 * 7 6 5 10 10 C 1.48160 * 127.83679 * 5.00906 * 9 7 6 11 11 C 1.54385 * 104.58212 * 140.38830 * 10 9 7 12 12 H 1.08996 * 110.81361 * 263.74405 * 11 10 9 13 13 C 1.54172 * 104.99984 * 23.96256 * 11 10 9 14 14 H 1.09001 * 110.99968 * 239.19589 * 13 11 10 15 15 C 1.48151 * 127.83492 * 184.98439 * 9 7 6 16 16 C 1.53282 * 109.33351 * 116.48167 * 13 11 10 17 17 H 1.09007 * 110.93301 * 182.19578 * 16 13 11 18 18 C 1.53314 * 108.74777 * 60.48061 * 16 13 11 19 19 C 1.52934 * 109.59792 * 299.35591 * 18 16 13 20 20 C 1.52968 * 109.06877 * 141.56914 * 11 10 9 21 21 H 1.08998 * 110.13446 * 65.80591 * 20 11 10 22 22 C 1.53615 * 109.29823 * 305.30370 * 20 11 10 23 23 N 1.47636 * 106.73303 * 300.59249 * 22 20 11 24 24 C 1.36932 * 122.06026 * 179.85271 * 23 22 20 25 25 H 1.07998 * 120.00197 * 178.30956 * 24 23 22 26 26 C 1.38814 * 120.00423 * 358.30333 * 24 23 22 27 27 N 1.31617 * 120.00150 * 159.22524 * 26 24 23 28 28 Si 1.86807 * 119.99708 * 339.22876 * 26 24 23 29 29 H 1.48497 * 109.47024 * 185.92401 * 28 26 24 30 30 H 1.48502 * 109.46974 * 65.92413 * 28 26 24 31 31 H 1.48502 * 109.46834 * 305.92715 * 28 26 24 32 32 C 1.37936 * 119.92254 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47386 * 269.98570 * 1 2 3 34 34 H 1.09006 * 109.46582 * 29.98318 * 1 2 3 35 35 H 1.08997 * 109.47543 * 149.98077 * 1 2 3 36 36 H 1.07998 * 119.85929 * 359.97438 * 3 2 1 37 37 H 1.07996 * 119.92706 * 179.97438 * 4 3 2 38 38 H 1.08000 * 120.06930 * 180.27994 * 5 4 3 39 39 H 1.09001 * 110.41284 * 21.61129 * 10 9 7 40 40 H 1.08999 * 110.41446 * 259.16317 * 10 9 7 41 41 H 1.08999 * 110.40510 * 338.32004 * 15 9 7 42 42 H 1.08999 * 110.40246 * 100.74733 * 15 9 7 43 43 H 1.09001 * 109.44824 * 59.39200 * 18 16 13 44 44 H 1.09000 * 109.45016 * 179.33983 * 18 16 13 45 45 H 1.08994 * 109.38087 * 120.81494 * 19 18 16 46 46 H 1.08997 * 109.37943 * 240.49445 * 19 18 16 47 47 H 1.09000 * 110.12377 * 181.21474 * 22 20 11 48 48 H 1.09003 * 109.87381 * 59.83100 * 22 20 11 49 49 H 0.96995 * 120.00084 * 5.01260 * 27 26 24 50 50 H 1.07991 * 120.07602 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0192 0.0052 6 6 3.5910 -1.1937 -0.0005 7 6 4.3351 -2.4713 -0.0005 8 8 3.7674 -3.5053 -0.2939 9 7 5.6429 -2.4895 0.3248 10 6 6.4758 -1.3620 0.8047 11 6 7.3791 -1.9817 1.8926 12 1 6.9562 -1.8221 2.8844 13 6 7.4457 -3.4830 1.5485 14 1 7.0702 -4.0897 2.3726 15 6 6.5736 -3.6415 0.2841 16 6 8.8906 -3.8611 1.2038 17 1 8.9609 -4.9108 0.9183 18 6 9.7784 -3.5751 2.4206 19 6 9.7151 -2.0859 2.7630 20 6 8.7756 -1.3654 1.7933 21 1 8.7362 -0.3048 2.0416 22 6 9.3076 -1.5412 0.3630 23 7 9.3394 -2.9930 0.0968 24 6 9.7644 -3.5033 -1.1007 25 1 9.7999 -4.5723 -1.2501 26 6 10.1496 -2.6466 -2.1228 27 7 10.9235 -3.0854 -3.0928 28 14 9.5697 -0.8708 -2.1214 29 1 9.9949 -0.2102 -3.3815 30 1 10.1644 -0.1568 -0.9630 31 1 8.0887 -0.8339 -2.0184 32 6 2.1951 -1.1955 -0.0005 33 1 -0.3634 -0.0003 1.0276 34 1 -0.3633 0.8902 -0.5136 35 1 -0.3634 -0.8898 -0.5141 36 1 1.6539 2.1325 -0.0004 37 1 4.1136 2.1474 -0.0009 38 1 5.3612 0.0275 0.0094 39 1 5.8477 -0.5803 1.2320 40 1 7.0805 -0.9626 -0.0094 41 1 6.0192 -4.5793 0.3197 42 1 7.1924 -3.5985 -0.6122 43 1 9.4268 -4.1584 3.2716 44 1 10.8077 -3.8511 2.1917 45 1 9.3465 -1.9643 3.7814 46 1 10.7133 -1.6547 2.6872 47 1 10.3120 -1.1253 0.2826 48 1 8.6408 -1.0471 -0.3437 49 1 11.1653 -4.0238 -3.1334 50 1 1.6551 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087330439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:34 Heat of formation + Delta-G solvation = 56.138884 kcal Electronic energy + Delta-G solvation = -31352.194919 eV Core-core repulsion = 27538.975944 eV Total energy + Delta-G solvation = -3813.218974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07237 -39.80045 -38.17946 -35.86513 -33.53444 -33.19874 -31.95856 -31.32245 -30.74097 -30.24857 -27.79685 -26.69410 -25.38381 -24.87903 -23.07228 -22.41537 -21.79159 -21.12350 -20.79617 -19.42315 -17.73064 -17.11218 -16.81236 -16.39880 -16.15500 -15.82311 -15.53805 -14.99515 -14.86891 -14.47864 -14.23047 -13.95234 -13.78275 -13.43793 -13.22896 -13.07181 -12.77407 -12.69255 -12.46689 -12.35132 -12.17094 -12.04431 -11.85647 -11.77030 -11.63045 -11.37816 -11.21379 -11.09386 -10.83032 -10.70581 -10.18729 -10.05385 -9.88517 -9.71807 -9.64839 -9.39476 -9.08980 -8.84951 -8.82758 -8.53966 -8.38655 -7.06903 -6.31275 -3.18437 0.80860 1.20780 2.91529 3.13300 3.30850 3.40812 3.64954 3.76508 4.44870 4.56350 4.59806 4.68399 4.72076 4.73398 4.90570 4.92298 4.99937 5.10290 5.21310 5.31174 5.36107 5.37765 5.40682 5.46093 5.50510 5.53428 5.56042 5.63374 5.64245 5.71523 5.78863 5.79335 5.89291 6.02776 6.05550 6.08688 6.16672 6.20183 6.24112 6.25629 6.32829 6.37053 6.44819 6.49661 6.54051 6.62339 6.69439 6.76725 6.77793 6.86841 7.75199 7.78147 8.32176 8.34526 9.04842 9.58324 10.15885 11.18736 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004009 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.901977 B = 6982.911743 C = 7506.253053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.120 4.120 7 C 0.574 3.426 8 O -0.546 6.546 9 N -0.609 5.609 10 C 0.078 3.922 11 C -0.083 4.083 12 H 0.078 0.922 13 C -0.111 4.111 14 H 0.075 0.925 15 C 0.110 3.890 16 C 0.181 3.819 17 H 0.076 0.924 18 C -0.129 4.129 19 C -0.101 4.101 20 C -0.092 4.092 21 H 0.074 0.926 22 C 0.119 3.881 23 N -0.600 5.600 24 C -0.335 4.335 25 H 0.077 0.923 26 C -0.023 4.023 27 N -0.926 5.926 28 Si 1.066 2.934 29 H -0.305 1.305 30 H -0.280 1.280 31 H -0.302 1.302 32 C -0.064 4.064 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.033 0.967 49 H 0.262 0.738 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 8.785 12.659 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.119 4.119 4 C -0.142 4.142 5 C -0.130 4.130 6 C -0.123 4.123 7 C 0.364 3.636 8 O -0.426 6.426 9 N -0.340 5.340 10 C -0.044 4.044 11 C -0.103 4.103 12 H 0.096 0.904 13 C -0.132 4.132 14 H 0.093 0.907 15 C -0.012 4.012 16 C 0.072 3.928 17 H 0.094 0.906 18 C -0.168 4.168 19 C -0.139 4.139 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.005 4.005 23 N -0.325 5.325 24 C -0.462 4.462 25 H 0.095 0.905 26 C -0.223 4.223 27 N -0.567 5.567 28 Si 0.902 3.098 29 H -0.234 1.234 30 H -0.208 1.208 31 H -0.232 1.232 32 C -0.083 4.083 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.211 9.634 11.602 20.722 hybrid contribution -0.135 -1.374 0.767 1.579 sum -14.346 8.261 12.369 20.665 Atomic orbital electron populations 1.20783 0.90776 1.02970 1.02401 1.19876 0.96348 0.92813 1.00827 1.21225 0.94348 0.97530 0.98783 1.21141 0.94217 0.98069 1.00743 1.22205 1.01712 0.91793 0.97337 1.19937 0.94189 0.93077 1.05051 1.17856 0.80022 0.88482 0.77273 1.90748 1.67615 1.34125 1.50085 1.48800 1.07796 1.12972 1.64465 1.23306 0.93065 0.90074 0.97980 1.21970 0.94873 0.95620 0.97815 0.90371 1.22696 0.98337 0.95452 0.96761 0.90684 1.22635 0.89863 0.88451 1.00212 1.20598 0.89273 0.94924 0.87979 0.90620 1.22010 1.01135 0.95603 0.98089 1.21345 0.99036 0.96152 0.97362 1.21392 0.94022 0.98965 0.96734 0.90777 1.22166 0.98546 0.86852 0.92964 1.44830 1.76334 0.99331 1.12015 1.20264 1.42333 0.93604 0.90022 0.90478 1.25670 0.97173 1.05112 0.94362 1.70899 1.31792 1.16572 1.37473 0.83994 0.74984 0.76602 0.74211 1.23396 1.20800 1.23162 1.21120 0.92517 0.98298 0.96347 0.91116 0.91439 0.91317 0.85780 0.85346 0.83505 0.89433 0.89359 0.91042 0.87762 0.92880 0.91774 0.92797 0.92161 0.92733 0.95043 0.92801 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.10 -1.06 5.87 -104.68 -0.61 -1.67 16 3 C -0.10 -0.99 9.69 -39.49 -0.38 -1.37 16 4 C -0.12 -1.31 10.03 -39.63 -0.40 -1.70 16 5 C -0.11 -1.46 8.15 -39.18 -0.32 -1.78 16 6 C -0.12 -1.80 5.83 -104.97 -0.61 -2.41 16 7 C 0.57 10.41 7.79 -12.33 -0.10 10.31 16 8 O -0.55 -11.49 16.72 5.32 0.09 -11.40 16 9 N -0.61 -10.65 3.32 -170.39 -0.56 -11.22 16 10 C 0.08 1.18 4.43 -2.40 -0.01 1.17 16 11 C -0.08 -1.20 3.12 -89.30 -0.28 -1.48 16 12 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.11 -1.77 3.17 -89.12 -0.28 -2.06 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.11 2.03 6.44 -2.39 -0.02 2.01 16 16 C 0.18 3.25 3.03 -66.98 -0.20 3.04 16 17 H 0.08 1.42 7.99 -51.93 -0.42 1.00 16 18 C -0.13 -1.99 5.85 -26.60 -0.16 -2.14 16 19 C -0.10 -1.43 5.65 -26.74 -0.15 -1.58 16 20 C -0.09 -1.39 2.87 -90.30 -0.26 -1.65 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 C 0.12 2.35 3.20 -3.10 -0.01 2.34 16 23 N -0.60 -13.08 1.94 -163.15 -0.32 -13.40 16 24 C -0.33 -8.90 9.50 -15.06 -0.14 -9.04 16 25 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 26 C -0.02 -0.66 5.48 -17.43 -0.10 -0.76 16 27 N -0.93 -28.53 13.70 55.49 0.76 -27.77 16 28 Si 1.07 25.73 24.35 -169.99 -4.14 21.59 16 29 H -0.31 -7.76 7.11 56.52 0.40 -7.36 16 30 H -0.28 -6.03 5.08 56.52 0.29 -5.74 16 31 H -0.30 -6.97 6.46 56.52 0.37 -6.60 16 32 C -0.06 -0.85 9.24 -39.19 -0.36 -1.21 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.15 1.88 4.21 -52.49 -0.22 1.66 16 39 H 0.09 1.09 5.20 -51.93 -0.27 0.82 16 40 H 0.09 1.51 4.79 -51.93 -0.25 1.26 16 41 H 0.07 1.32 7.85 -51.93 -0.41 0.92 16 42 H 0.10 2.29 6.29 -51.93 -0.33 1.97 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.18 6.10 -51.93 -0.32 0.86 16 48 H 0.03 0.67 1.60 -51.93 -0.08 0.59 16 49 H 0.26 8.00 8.73 -40.82 -0.36 7.65 16 50 H 0.13 1.76 7.74 -52.49 -0.41 1.36 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.29 363.96 -10.20 -42.49 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.49 Total: 4.70 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -4.03 Total: -10.48 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.12 Total: -52.39 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.14 Total: 21.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.29 -10.20 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087330439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.627 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds