Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37978 * 120.07204 * 2 1 4 4 C 1.38338 * 120.14062 * 180.27886 * 3 2 1 5 5 C 1.38379 * 120.29766 * 359.69300 * 4 3 2 6 6 C 1.37946 * 120.14152 * 0.02562 * 5 4 3 7 7 C 1.39556 * 120.07353 * 179.70175 * 2 1 3 8 8 C 1.47842 * 120.14516 * 0.02562 * 7 2 1 9 9 O 1.21548 * 120.00228 * 323.93169 * 8 7 2 10 10 N 1.34779 * 119.99892 * 143.92524 * 8 7 2 11 11 C 1.48139 * 127.83558 * 355.29653 * 10 8 7 12 12 C 1.54372 * 104.62183 * 219.43188 * 11 10 8 13 13 H 1.09001 * 110.91691 * 216.49293 * 12 11 10 14 14 C 1.54162 * 105.04221 * 336.38911 * 12 11 10 15 15 H 1.08999 * 110.87431 * 239.93776 * 14 12 11 16 16 C 1.48156 * 127.83600 * 175.27248 * 10 8 7 17 17 C 1.53015 * 109.72847 * 116.60639 * 14 12 11 18 18 H 1.08997 * 109.64430 * 180.44103 * 17 14 12 19 19 C 1.53072 * 109.15815 * 300.56392 * 17 14 12 20 20 C 1.52919 * 110.00187 * 59.24730 * 19 17 14 21 21 C 1.53208 * 108.99407 * 93.57190 * 12 11 10 22 22 H 1.09006 * 110.51937 * 67.34424 * 21 12 11 23 23 N 1.47656 * 108.06780 * 188.96620 * 21 12 11 24 24 C 1.36936 * 122.04278 * 238.62219 * 23 21 12 25 25 H 1.07998 * 120.00212 * 353.56287 * 24 23 21 26 26 C 1.38812 * 119.99661 * 173.56802 * 24 23 21 27 27 N 1.31618 * 120.00547 * 9.80980 * 26 24 23 28 28 Si 1.86802 * 119.99619 * 189.81772 * 26 24 23 29 29 H 1.48496 * 109.47221 * 94.97361 * 28 26 24 30 30 H 1.48500 * 109.46989 * 214.97603 * 28 26 24 31 31 H 1.48498 * 109.47267 * 334.97433 * 28 26 24 32 32 C 1.47576 * 115.91415 * 58.60478 * 23 21 12 33 33 H 1.08992 * 109.46847 * 265.05652 * 1 2 3 34 34 H 1.09000 * 109.47031 * 25.05920 * 1 2 3 35 35 H 1.09001 * 109.46766 * 145.05614 * 1 2 3 36 36 H 1.07999 * 119.92987 * 359.97438 * 3 2 1 37 37 H 1.08002 * 119.85174 * 179.71950 * 4 3 2 38 38 H 1.07998 * 119.93207 * 180.02562 * 5 4 3 39 39 H 1.08001 * 120.07268 * 179.97438 * 6 5 4 40 40 H 1.09000 * 110.40820 * 100.64623 * 11 10 8 41 41 H 1.09003 * 110.40917 * 338.21695 * 11 10 8 42 42 H 1.09003 * 110.41029 * 21.60017 * 16 10 8 43 43 H 1.08993 * 110.41295 * 259.15632 * 16 10 8 44 44 H 1.08997 * 109.38380 * 179.40770 * 19 17 14 45 45 H 1.08998 * 109.38159 * 299.18788 * 19 17 14 46 46 H 1.08997 * 109.44402 * 120.89940 * 20 19 17 47 47 H 1.09003 * 109.44325 * 240.83313 * 20 19 17 48 48 H 0.96991 * 120.00147 * 180.02562 * 27 26 24 49 49 H 1.09005 * 109.99414 * 241.00973 * 32 23 21 50 50 H 1.08997 * 109.99930 * 119.63189 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0058 5 6 4.2814 0.0018 -0.0053 6 6 3.6023 -1.1989 0.0005 7 6 2.2064 -1.2077 0.0063 8 6 1.4721 -2.4908 0.0124 9 8 0.4315 -2.5926 0.6322 10 7 1.9565 -3.5477 -0.6695 11 6 3.1447 -3.5919 -1.5530 12 6 2.7198 -4.4923 -2.7328 13 1 3.5535 -5.1063 -3.0736 14 6 1.5812 -5.3701 -2.1763 15 1 1.8396 -6.4272 -2.2392 16 6 1.4216 -4.9289 -0.7050 17 6 0.2829 -5.0700 -2.9283 18 1 -0.5228 -5.6857 -2.5286 19 6 -0.0667 -3.5897 -2.7561 20 6 1.0657 -2.7180 -3.3004 21 6 2.1781 -3.6109 -3.8628 22 1 2.9763 -3.0037 -4.2899 23 7 1.5801 -4.4930 -4.8849 24 6 2.0152 -4.4997 -6.1833 25 1 2.7461 -3.7756 -6.5116 26 6 1.5168 -5.4373 -7.0774 27 7 0.4926 -6.1911 -6.7379 28 14 2.2998 -5.6293 -8.7625 29 1 3.3022 -6.7241 -8.7207 30 1 1.2508 -5.9564 -9.7614 31 1 2.9689 -4.3599 -9.1450 32 6 0.4850 -5.3670 -4.4216 33 1 -0.3633 -0.0886 1.0238 34 1 -0.3633 0.9309 -0.4353 35 1 -0.3633 -0.8424 -0.5886 36 1 1.6585 2.1294 -0.0004 37 1 4.1183 2.1331 -0.0104 38 1 5.3613 0.0100 -0.0094 39 1 4.1494 -2.1301 0.0005 40 1 3.9932 -4.0296 -1.0272 41 1 3.3916 -2.5914 -1.9083 42 1 0.3701 -4.9368 -0.4177 43 1 2.0009 -5.5779 -0.0484 44 1 -0.9857 -3.3695 -3.2993 45 1 -0.2113 -3.3730 -1.6977 46 1 0.6806 -2.0756 -4.0922 47 1 1.4677 -2.1016 -2.4963 48 1 0.1447 -6.8464 -7.3625 49 1 0.7591 -6.4129 -4.5598 50 1 -0.4285 -5.1441 -4.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087332479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 32.210761 kcal Electronic energy + Delta-G solvation = -31861.109793 eV Core-core repulsion = 28046.853218 eV Total energy + Delta-G solvation = -3814.256576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19231 -39.65774 -37.93332 -35.72380 -33.18321 -32.72555 -31.96133 -31.38930 -30.24092 -29.69743 -27.49167 -26.99475 -25.35584 -24.41940 -22.89579 -21.91751 -21.72601 -20.96790 -20.60769 -19.51094 -17.59079 -16.98581 -16.65061 -16.35120 -15.95871 -15.63254 -15.22234 -14.70083 -14.43685 -14.17990 -14.15307 -13.88029 -13.46577 -13.34561 -13.17012 -12.80206 -12.50270 -12.27698 -12.17747 -12.09555 -11.98912 -11.86426 -11.64869 -11.46326 -11.34763 -11.25712 -11.10814 -10.96182 -10.83542 -10.60950 -10.43998 -10.15818 -9.87337 -9.66621 -9.63337 -9.26951 -9.18643 -9.04932 -8.83823 -8.45380 -8.42718 -6.81918 -5.66718 -3.01107 0.85554 1.21312 2.83510 3.07084 3.40156 3.46083 3.47879 3.69338 4.46637 4.48852 4.67294 4.71993 4.82331 4.89238 5.02169 5.16815 5.18356 5.29498 5.41252 5.45378 5.50380 5.52539 5.63690 5.66250 5.67543 5.72310 5.73381 5.75609 5.80796 5.87220 6.01318 6.10965 6.15142 6.16075 6.17425 6.22160 6.28133 6.32771 6.34590 6.43714 6.50097 6.56077 6.75708 6.76819 6.82408 6.90544 7.01861 7.08239 7.66657 7.68898 7.73142 7.92514 8.25739 8.33906 9.27308 9.88948 10.44080 11.39343 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003715 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.777706 B = 7535.963860 C = 8090.491684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.029 4.029 3 C -0.130 4.130 4 C -0.096 4.096 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.127 4.127 8 C 0.581 3.419 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.100 3.900 12 C -0.108 4.108 13 H 0.086 0.914 14 C -0.081 4.081 15 H 0.083 0.917 16 C 0.109 3.891 17 C -0.108 4.108 18 H 0.062 0.938 19 C -0.102 4.102 20 C -0.125 4.125 21 C 0.183 3.817 22 H 0.064 0.936 23 N -0.599 5.599 24 C -0.236 4.236 25 H 0.074 0.926 26 C -0.005 4.005 27 N -0.919 5.919 28 Si 0.904 3.096 29 H -0.290 1.290 30 H -0.293 1.293 31 H -0.282 1.282 32 C 0.203 3.797 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.250 0.750 49 H 0.049 0.951 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 9.999 15.004 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.030 4.030 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.153 4.153 6 C -0.103 4.103 7 C -0.130 4.130 8 C 0.371 3.629 9 O -0.418 6.418 10 N -0.338 5.338 11 C -0.023 4.023 12 C -0.129 4.129 13 H 0.104 0.896 14 C -0.100 4.100 15 H 0.101 0.899 16 C -0.013 4.013 17 C -0.127 4.127 18 H 0.081 0.919 19 C -0.139 4.139 20 C -0.165 4.165 21 C 0.074 3.926 22 H 0.082 0.918 23 N -0.322 5.322 24 C -0.365 4.365 25 H 0.092 0.908 26 C -0.201 4.201 27 N -0.566 5.566 28 Si 0.735 3.265 29 H -0.217 1.217 30 H -0.219 1.219 31 H -0.208 1.208 32 C 0.079 3.921 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.276 9.896 15.220 18.906 hybrid contribution 0.524 -0.187 -1.017 1.159 sum 5.799 9.709 14.203 18.156 Atomic orbital electron populations 1.20867 0.90262 1.02663 1.03307 1.19980 0.96650 0.91545 0.94790 1.21015 0.94293 0.97365 1.02162 1.21299 0.94234 0.98235 0.97671 1.21067 1.00079 0.92186 1.01959 1.21436 0.92909 0.98838 0.97135 1.19780 0.93802 0.93049 1.06327 1.17762 0.84176 0.82371 0.78633 1.90761 1.23087 1.83573 1.44376 1.48822 1.29315 1.09741 1.45964 1.22708 0.87362 1.01334 0.90917 1.22750 0.97954 0.97088 0.95095 0.89588 1.21993 0.96403 0.99308 0.92283 0.89915 1.22493 1.00205 0.81245 0.97381 1.21815 0.95206 0.95934 0.99774 0.91937 1.21387 0.97862 0.95175 0.99506 1.22044 0.97579 0.98011 0.98833 1.20519 0.93335 0.90498 0.88230 0.91752 1.44576 1.38429 1.44222 1.05006 1.19260 1.19583 1.12046 0.85603 0.90827 1.24789 0.98304 0.98703 0.98344 1.70053 1.24944 1.26358 1.35264 0.86214 0.78499 0.77759 0.84022 1.21742 1.21949 1.20770 1.21074 0.91161 0.94127 0.85735 0.90338 0.91937 0.90575 0.85526 0.85772 0.85574 0.85284 0.91555 0.89993 0.89968 0.91727 0.93269 0.92963 0.92940 0.93668 0.93904 0.93287 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.68 36.01 0.31 -1.11 16 2 C -0.03 -0.36 5.91 -104.22 -0.62 -0.98 16 3 C -0.13 -1.34 9.67 -39.64 -0.38 -1.72 16 4 C -0.10 -0.88 10.04 -39.49 -0.40 -1.27 16 5 C -0.13 -1.27 10.03 -39.64 -0.40 -1.66 16 6 C -0.08 -0.94 7.91 -39.18 -0.31 -1.25 16 7 C -0.13 -1.69 5.12 -104.97 -0.54 -2.23 16 8 C 0.58 8.90 5.06 -12.33 -0.06 8.84 16 9 O -0.54 -9.68 14.70 5.32 0.08 -9.60 16 10 N -0.61 -8.60 1.72 -170.40 -0.29 -8.90 16 11 C 0.10 1.29 3.97 -2.42 -0.01 1.28 16 12 C -0.11 -1.72 3.38 -89.19 -0.30 -2.02 16 13 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 14 C -0.08 -1.29 3.19 -89.25 -0.28 -1.58 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.11 1.55 5.82 -2.38 -0.01 1.54 16 17 C -0.11 -2.03 2.71 -90.27 -0.24 -2.27 16 18 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 19 C -0.10 -1.88 5.07 -26.74 -0.14 -2.02 16 20 C -0.13 -2.30 5.29 -26.60 -0.14 -2.44 16 21 C 0.18 3.52 3.02 -67.02 -0.20 3.32 16 22 H 0.06 1.24 8.02 -51.93 -0.42 0.82 16 23 N -0.60 -14.33 2.87 -163.26 -0.47 -14.80 16 24 C -0.24 -6.30 9.97 -15.06 -0.15 -6.45 16 25 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 26 C -0.01 -0.15 5.45 -17.43 -0.10 -0.24 16 27 N -0.92 -26.27 9.86 55.49 0.55 -25.72 16 28 Si 0.90 21.70 29.56 -169.99 -5.03 16.68 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 32 C 0.20 4.79 4.37 -3.15 -0.01 4.78 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.08 1.12 6.72 -51.93 -0.35 0.77 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.26 6.26 -52.49 -0.33 0.93 16 40 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.08 1.04 5.49 -51.93 -0.28 0.75 16 42 H 0.08 1.27 6.99 -51.93 -0.36 0.90 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.95 4.98 -51.93 -0.26 0.69 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.04 0.76 4.81 -51.93 -0.25 0.51 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.05 1.28 7.17 -51.93 -0.37 0.91 16 50 H 0.05 1.28 7.33 -51.93 -0.38 0.90 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -30.68 365.73 -11.24 -41.92 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.61 Total: 2.40 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.98 Total: -7.49 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.22 Total: -49.42 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.68 -11.24 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.127 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds