Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37978 * 120.07204 * 2 1 4 4 C 1.38338 * 120.14062 * 180.27886 * 3 2 1 5 5 C 1.38379 * 120.29766 * 359.69300 * 4 3 2 6 6 C 1.37946 * 120.14152 * 0.02562 * 5 4 3 7 7 C 1.39556 * 120.07353 * 179.70175 * 2 1 3 8 8 C 1.47842 * 120.14516 * 0.02562 * 7 2 1 9 9 O 1.21548 * 120.00228 * 323.93169 * 8 7 2 10 10 N 1.34779 * 119.99892 * 143.92524 * 8 7 2 11 11 C 1.48139 * 127.83558 * 355.29653 * 10 8 7 12 12 C 1.54372 * 104.62183 * 219.43188 * 11 10 8 13 13 H 1.09001 * 110.91691 * 216.49293 * 12 11 10 14 14 C 1.54162 * 105.04221 * 336.38911 * 12 11 10 15 15 H 1.08999 * 110.87431 * 239.93776 * 14 12 11 16 16 C 1.48156 * 127.83600 * 175.27248 * 10 8 7 17 17 C 1.53015 * 109.72847 * 116.60639 * 14 12 11 18 18 H 1.08997 * 109.64430 * 180.44103 * 17 14 12 19 19 C 1.53072 * 109.15815 * 300.56392 * 17 14 12 20 20 C 1.52919 * 110.00187 * 59.24730 * 19 17 14 21 21 C 1.53208 * 108.99407 * 93.57190 * 12 11 10 22 22 H 1.09006 * 110.51937 * 67.34424 * 21 12 11 23 23 N 1.47656 * 108.06780 * 188.96620 * 21 12 11 24 24 C 1.36936 * 122.04278 * 238.62219 * 23 21 12 25 25 H 1.07998 * 120.00212 * 353.56287 * 24 23 21 26 26 C 1.38812 * 119.99661 * 173.56802 * 24 23 21 27 27 N 1.31618 * 120.00547 * 9.80980 * 26 24 23 28 28 Si 1.86802 * 119.99619 * 189.81772 * 26 24 23 29 29 H 1.48496 * 109.47221 * 94.97361 * 28 26 24 30 30 H 1.48500 * 109.46989 * 214.97603 * 28 26 24 31 31 H 1.48498 * 109.47267 * 334.97433 * 28 26 24 32 32 C 1.47576 * 115.91415 * 58.60478 * 23 21 12 33 33 H 1.08992 * 109.46847 * 265.05652 * 1 2 3 34 34 H 1.09000 * 109.47031 * 25.05920 * 1 2 3 35 35 H 1.09001 * 109.46766 * 145.05614 * 1 2 3 36 36 H 1.07999 * 119.92987 * 359.97438 * 3 2 1 37 37 H 1.08002 * 119.85174 * 179.71950 * 4 3 2 38 38 H 1.07998 * 119.93207 * 180.02562 * 5 4 3 39 39 H 1.08001 * 120.07268 * 179.97438 * 6 5 4 40 40 H 1.09000 * 110.40820 * 100.64623 * 11 10 8 41 41 H 1.09003 * 110.40917 * 338.21695 * 11 10 8 42 42 H 1.09003 * 110.41029 * 21.60017 * 16 10 8 43 43 H 1.08993 * 110.41295 * 259.15632 * 16 10 8 44 44 H 1.08997 * 109.38380 * 179.40770 * 19 17 14 45 45 H 1.08998 * 109.38159 * 299.18788 * 19 17 14 46 46 H 1.08997 * 109.44402 * 120.89940 * 20 19 17 47 47 H 1.09003 * 109.44325 * 240.83313 * 20 19 17 48 48 H 0.96991 * 120.00147 * 180.02562 * 27 26 24 49 49 H 1.09005 * 109.99414 * 241.00973 * 32 23 21 50 50 H 1.08997 * 109.99930 * 119.63189 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 -0.0058 5 6 4.2814 0.0018 -0.0053 6 6 3.6023 -1.1989 0.0005 7 6 2.2064 -1.2077 0.0063 8 6 1.4721 -2.4908 0.0124 9 8 0.4315 -2.5926 0.6322 10 7 1.9565 -3.5477 -0.6695 11 6 3.1447 -3.5919 -1.5530 12 6 2.7198 -4.4923 -2.7328 13 1 3.5535 -5.1063 -3.0736 14 6 1.5812 -5.3701 -2.1763 15 1 1.8396 -6.4272 -2.2392 16 6 1.4216 -4.9289 -0.7050 17 6 0.2829 -5.0700 -2.9283 18 1 -0.5228 -5.6857 -2.5286 19 6 -0.0667 -3.5897 -2.7561 20 6 1.0657 -2.7180 -3.3004 21 6 2.1781 -3.6109 -3.8628 22 1 2.9763 -3.0037 -4.2899 23 7 1.5801 -4.4930 -4.8849 24 6 2.0152 -4.4997 -6.1833 25 1 2.7461 -3.7756 -6.5116 26 6 1.5168 -5.4373 -7.0774 27 7 0.4926 -6.1911 -6.7379 28 14 2.2998 -5.6293 -8.7625 29 1 3.3022 -6.7241 -8.7207 30 1 1.2508 -5.9564 -9.7614 31 1 2.9689 -4.3599 -9.1450 32 6 0.4850 -5.3670 -4.4216 33 1 -0.3633 -0.0886 1.0238 34 1 -0.3633 0.9309 -0.4353 35 1 -0.3633 -0.8424 -0.5886 36 1 1.6585 2.1294 -0.0004 37 1 4.1183 2.1331 -0.0104 38 1 5.3613 0.0100 -0.0094 39 1 4.1494 -2.1301 0.0005 40 1 3.9932 -4.0296 -1.0272 41 1 3.3916 -2.5914 -1.9083 42 1 0.3701 -4.9368 -0.4177 43 1 2.0009 -5.5779 -0.0484 44 1 -0.9857 -3.3695 -3.2993 45 1 -0.2113 -3.3730 -1.6977 46 1 0.6806 -2.0756 -4.0922 47 1 1.4677 -2.1016 -2.4963 48 1 0.1447 -6.8464 -7.3625 49 1 0.7591 -6.4129 -4.5598 50 1 -0.4285 -5.1441 -4.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087332479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = 17.155970 kcal Electronic energy + Delta-G solvation = -31861.762618 eV Core-core repulsion = 28046.853218 eV Total energy + Delta-G solvation = -3814.909400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48745 -40.72208 -39.00944 -37.17041 -34.91913 -33.59834 -33.38349 -32.59488 -31.64064 -31.31623 -28.84150 -27.96743 -26.98420 -25.73360 -23.94365 -23.64954 -22.73629 -22.42943 -21.94801 -20.54761 -19.18336 -18.33232 -17.99487 -17.66530 -16.98885 -16.64294 -16.55157 -16.42141 -15.86260 -15.69635 -15.22956 -15.05179 -14.62313 -14.42388 -14.14690 -14.06765 -14.01568 -13.85227 -13.51784 -13.37722 -13.15045 -13.01405 -12.97783 -12.83876 -12.73968 -12.66350 -12.53709 -12.43228 -12.25322 -12.06712 -12.05357 -11.93565 -11.74221 -11.17179 -10.90813 -10.82887 -10.76514 -10.46309 -9.88339 -9.70716 -9.52171 -8.80819 -7.74840 -5.10886 0.01594 0.44755 1.48040 1.48773 1.57296 1.77705 2.02103 2.53147 2.86337 3.35064 3.41045 3.52663 3.73423 3.81715 3.84730 3.91059 3.96199 4.15638 4.19294 4.25517 4.26931 4.36374 4.40542 4.42403 4.53813 4.59720 4.65972 4.68129 4.73621 4.75268 4.77349 4.84214 4.85769 4.90612 4.97095 4.98179 5.04940 5.12429 5.17793 5.26062 5.28118 5.41878 5.44724 5.47129 5.54923 5.57022 5.61332 5.62520 5.76209 5.89658 6.02362 6.30148 6.57944 7.13793 7.20006 7.91074 8.43051 9.29371 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003715 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.777706 B = 7535.963860 C = 8090.491684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.052 4.052 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.132 4.132 6 C -0.088 4.088 7 C -0.153 4.153 8 C 0.578 3.422 9 O -0.576 6.576 10 N -0.607 5.607 11 C 0.110 3.890 12 C -0.103 4.103 13 H 0.090 0.910 14 C -0.077 4.077 15 H 0.089 0.911 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.067 0.933 19 C -0.093 4.093 20 C -0.114 4.114 21 C 0.176 3.824 22 H 0.069 0.931 23 N -0.614 5.614 24 C -0.242 4.242 25 H 0.080 0.920 26 C -0.063 4.063 27 N -0.949 5.949 28 Si 0.967 3.033 29 H -0.288 1.288 30 H -0.302 1.302 31 H -0.269 1.269 32 C 0.219 3.781 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.066 0.934 48 H 0.242 0.758 49 H 0.018 0.982 50 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 11.759 16.530 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C -0.152 4.152 4 C -0.109 4.109 5 C -0.150 4.150 6 C -0.107 4.107 7 C -0.156 4.156 8 C 0.369 3.631 9 O -0.457 6.457 10 N -0.339 5.339 11 C -0.013 4.013 12 C -0.123 4.123 13 H 0.109 0.891 14 C -0.097 4.097 15 H 0.107 0.893 16 C -0.007 4.007 17 C -0.121 4.121 18 H 0.086 0.914 19 C -0.131 4.131 20 C -0.153 4.153 21 C 0.069 3.931 22 H 0.087 0.913 23 N -0.338 5.338 24 C -0.371 4.371 25 H 0.098 0.902 26 C -0.256 4.256 27 N -0.598 5.598 28 Si 0.797 3.203 29 H -0.215 1.215 30 H -0.229 1.229 31 H -0.194 1.194 32 C 0.094 3.906 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.036 0.964 50 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 8.741 11.684 16.766 22.227 hybrid contribution -0.553 -0.629 -1.497 1.716 sum 8.188 11.056 15.268 20.552 Atomic orbital electron populations 1.20774 0.91086 1.02265 1.02454 1.20126 0.96449 0.92492 0.96252 1.21291 0.95197 0.97201 1.01490 1.21730 0.93813 0.99667 0.95696 1.21469 1.01638 0.91513 1.00343 1.21638 0.91851 1.00340 0.96827 1.19780 0.94933 0.92049 1.08812 1.18172 0.83780 0.83067 0.78060 1.90737 1.24775 1.84174 1.46024 1.48875 1.29647 1.09492 1.45882 1.22753 0.87692 1.01226 0.89599 1.22596 0.97787 0.96948 0.95018 0.89133 1.21934 0.94543 0.99910 0.93287 0.89298 1.22428 1.00147 0.81967 0.96120 1.21690 0.97474 0.96112 0.96823 0.91432 1.21287 0.97155 0.95118 0.99507 1.21914 0.97163 0.97626 0.98624 1.20794 0.93399 0.90536 0.88381 0.91323 1.44822 1.38768 1.44811 1.05351 1.19646 1.18873 1.11633 0.86985 0.90245 1.25541 0.99010 0.99112 1.01911 1.70290 1.26363 1.27093 1.36085 0.85214 0.77251 0.77993 0.79841 1.21485 1.22940 1.19410 1.20609 0.89165 0.92453 0.88352 0.91059 0.90071 0.93581 0.83607 0.82666 0.82574 0.83885 0.87638 0.89254 0.91436 0.88652 0.95347 0.92236 0.95178 0.91588 0.94795 0.96387 0.98186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 8.68 71.24 0.62 -2.10 16 2 C -0.05 -1.24 5.91 -19.61 -0.12 -1.36 16 3 C -0.13 -2.36 9.67 22.23 0.21 -2.14 16 4 C -0.09 -1.27 10.04 22.33 0.22 -1.04 16 5 C -0.13 -1.87 10.03 22.23 0.22 -1.65 16 6 C -0.09 -1.63 7.91 22.53 0.18 -1.45 16 7 C -0.15 -3.80 5.12 -20.09 -0.10 -3.90 16 8 C 0.58 17.04 5.06 86.79 0.44 17.48 16 9 O -0.58 -20.77 14.70 -3.87 -0.06 -20.83 16 10 N -0.61 -15.89 1.72 -811.30 -1.40 -17.29 16 11 C 0.11 2.43 3.97 86.53 0.34 2.77 16 12 C -0.10 -3.06 3.38 -9.86 -0.03 -3.09 16 13 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 14 C -0.08 -2.40 3.19 -9.91 -0.03 -2.43 16 15 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 16 C 0.12 3.06 5.82 86.55 0.50 3.56 16 17 C -0.10 -3.92 2.71 -10.57 -0.03 -3.95 16 18 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 19 C -0.09 -3.54 5.07 30.59 0.16 -3.39 16 20 C -0.11 -4.20 5.29 30.68 0.16 -4.04 16 21 C 0.18 6.64 3.02 44.95 0.14 6.78 16 22 H 0.07 2.53 8.02 -2.38 -0.02 2.52 16 23 N -0.61 -30.01 2.87 -670.42 -1.93 -31.94 16 24 C -0.24 -13.10 9.97 84.03 0.84 -12.26 16 25 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 26 C -0.06 -3.53 5.45 84.86 0.46 -3.07 16 27 N -0.95 -56.75 9.86 21.65 0.21 -56.54 16 28 Si 0.97 45.40 29.56 68.60 2.03 47.43 16 29 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 30 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 31 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 32 C 0.22 10.86 4.37 86.37 0.38 11.24 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 35 H 0.05 1.40 6.72 -2.39 -0.02 1.38 16 36 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.14 2.14 6.26 -2.91 -0.02 2.12 16 40 H 0.11 1.65 7.91 -2.39 -0.02 1.63 16 41 H 0.09 1.91 5.49 -2.39 -0.01 1.89 16 42 H 0.07 2.02 6.99 -2.39 -0.02 2.01 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 2.21 4.98 -2.39 -0.01 2.20 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 2.17 4.81 -2.39 -0.01 2.16 16 48 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 49 H 0.02 1.00 7.17 -2.38 -0.02 0.98 16 50 H 0.00 0.00 7.33 -2.39 -0.02 -0.02 16 Total: -1.00 -70.94 365.73 4.36 -66.57 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.94 Total: 16.63 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 4.56 Total: -4.04 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.11 Total: -105.76 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.94 4.36 -66.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.728 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds