Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37980 * 120.07558 * 2 1 4 4 C 1.38333 * 120.14489 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.29483 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14491 * 359.74832 * 5 4 3 7 7 C 1.39560 * 120.07243 * 179.97438 * 2 1 3 8 8 C 1.47848 * 120.14568 * 359.97438 * 7 2 1 9 9 O 1.21552 * 119.99952 * 30.41824 * 8 7 2 10 10 N 1.34773 * 119.99892 * 210.42246 * 8 7 2 11 11 C 1.49650 * 127.84390 * 184.62377 * 10 8 7 12 12 C 1.54377 * 104.53175 * 219.51943 * 11 10 8 13 13 H 1.09003 * 111.27373 * 215.52047 * 12 11 10 14 14 C 1.55415 * 104.78182 * 336.32544 * 12 11 10 15 15 H 1.09008 * 110.66763 * 239.26400 * 14 12 11 16 16 C 1.48152 * 127.84413 * 4.43293 * 10 8 7 17 17 C 1.53267 * 109.51507 * 116.65039 * 14 12 11 18 18 H 1.09008 * 110.93016 * 181.84096 * 17 14 12 19 19 C 1.53313 * 108.75226 * 60.12926 * 17 14 12 20 20 C 1.52931 * 109.59340 * 299.33049 * 19 17 14 21 21 C 1.52980 * 109.08380 * 93.04196 * 12 11 10 22 22 H 1.08997 * 109.63736 * 66.07020 * 21 12 11 23 23 C 1.53611 * 109.79805 * 305.56847 * 21 12 11 24 24 N 1.47647 * 106.73915 * 300.23176 * 23 21 12 25 25 C 1.36934 * 122.06781 * 179.97438 * 24 23 21 26 26 H 1.07997 * 120.00157 * 190.06398 * 25 24 23 27 27 C 1.38816 * 119.99910 * 10.05227 * 25 24 23 28 28 N 1.31623 * 119.99506 * 195.16421 * 27 25 24 29 29 Si 1.86796 * 119.99930 * 15.16669 * 27 25 24 30 30 H 1.48501 * 109.47129 * 175.33601 * 29 27 25 31 31 H 1.48501 * 109.47275 * 55.33745 * 29 27 25 32 32 H 1.48498 * 109.47347 * 295.33511 * 29 27 25 33 33 H 1.08997 * 109.47154 * 261.99529 * 1 2 3 34 34 H 1.08993 * 109.47078 * 21.99708 * 1 2 3 35 35 H 1.09002 * 109.47061 * 141.99942 * 1 2 3 36 36 H 1.07996 * 119.92735 * 359.97438 * 3 2 1 37 37 H 1.08006 * 119.85605 * 180.02562 * 4 3 2 38 38 H 1.08005 * 119.92998 * 180.02562 * 5 4 3 39 39 H 1.07998 * 120.07848 * 180.26896 * 6 5 4 40 40 H 1.09001 * 111.07613 * 100.44880 * 11 10 8 41 41 H 1.08998 * 109.81280 * 337.96286 * 11 10 8 42 42 H 1.09007 * 110.40616 * 21.65055 * 16 10 8 43 43 H 1.08997 * 110.41293 * 259.21314 * 16 10 8 44 44 H 1.09001 * 109.44977 * 59.37245 * 19 17 14 45 45 H 1.09006 * 109.44935 * 179.31874 * 19 17 14 46 46 H 1.09005 * 109.38122 * 120.86686 * 20 19 17 47 47 H 1.08996 * 109.38605 * 240.54352 * 20 19 17 48 48 H 1.08987 * 110.12649 * 180.84962 * 23 21 12 49 49 H 1.09004 * 109.86402 * 59.45991 * 23 21 12 50 50 H 0.96997 * 120.00594 * 3.94262 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6023 -1.1989 0.0052 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4909 0.0017 9 8 0.3820 -2.5679 -0.5308 10 7 2.0110 -3.5753 0.5932 11 6 1.4725 -4.9714 0.6166 12 6 1.7614 -5.4740 2.0474 13 1 2.0119 -6.5349 2.0508 14 6 2.9497 -4.6027 2.5414 15 1 3.8045 -5.2282 2.7988 16 6 3.2732 -3.6567 1.3647 17 6 2.5038 -3.7629 3.7435 18 1 3.3117 -3.1178 4.0890 19 6 2.0539 -4.7069 4.8646 20 6 0.8779 -5.5556 4.3794 21 6 0.5409 -5.2026 2.9289 22 1 -0.2983 -5.8098 2.5896 23 6 0.1652 -3.7150 2.8536 24 7 1.3380 -2.9556 3.3311 25 6 1.3421 -1.5877 3.3935 26 1 2.2629 -1.0589 3.5905 27 6 0.1627 -0.8807 3.2033 28 7 0.2022 0.4132 2.9653 29 14 -1.4803 -1.7657 3.2852 30 1 -2.5817 -0.7771 3.1626 31 1 -1.5955 -2.4765 4.5839 32 1 -1.5700 -2.7469 2.1742 33 1 -0.3633 -0.1431 1.0176 34 1 -0.3633 0.9528 -0.3849 35 1 -0.3633 -0.8098 -0.6327 36 1 1.6585 2.1293 -0.0004 37 1 4.1183 2.1331 0.0010 38 1 5.3613 0.0099 0.0014 39 1 4.1493 -2.1301 0.0096 40 1 1.9791 -5.5993 -0.1163 41 1 0.3990 -4.9565 0.4285 42 1 3.5561 -2.6715 1.7357 43 1 4.0691 -4.0747 0.7484 44 1 2.8814 -5.3591 5.1438 45 1 1.7454 -4.1211 5.7305 46 1 1.1430 -6.6110 4.4426 47 1 0.0093 -5.3641 5.0094 48 1 -0.6949 -3.5127 3.4917 49 1 -0.0613 -3.4419 1.8230 50 1 1.0562 0.8623 2.8660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087332480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = 58.225868 kcal Electronic energy + Delta-G solvation = -33672.438063 eV Core-core repulsion = 29859.309587 eV Total energy + Delta-G solvation = -3813.128476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88529 -39.19617 -37.39772 -35.51898 -33.46294 -32.11358 -31.81036 -31.08664 -30.58438 -29.68153 -27.18616 -26.24839 -25.12902 -24.28195 -22.79266 -22.04116 -21.24833 -20.93407 -20.41694 -19.08069 -17.63579 -16.85233 -16.70709 -16.17404 -15.64956 -15.35999 -15.11337 -14.90536 -14.48809 -13.82454 -13.64198 -13.55271 -13.17697 -13.05999 -12.65453 -12.49217 -12.37496 -12.27990 -12.20718 -11.94005 -11.87411 -11.54483 -11.43667 -11.39054 -11.21930 -11.05566 -10.99806 -10.86736 -10.69667 -10.42729 -10.25444 -9.81641 -9.74293 -9.60137 -9.15652 -8.92707 -8.75273 -8.42916 -8.31766 -8.10353 -7.88253 -6.84299 -6.17405 -3.07056 1.59346 2.01622 3.38228 3.54229 3.54989 3.62797 3.76610 4.48115 4.67577 4.73694 4.78214 4.98345 5.05664 5.22703 5.33520 5.41555 5.46240 5.49169 5.52137 5.53870 5.60557 5.64101 5.64562 5.67684 5.81965 5.91264 5.96548 6.05369 6.07820 6.13055 6.15229 6.20693 6.23103 6.29437 6.36885 6.41768 6.47786 6.52433 6.57185 6.59689 6.70855 6.81063 6.85824 6.87148 6.96000 6.98757 7.02221 7.32061 7.42993 7.69836 7.86471 8.19297 8.46598 8.87133 9.16611 9.68987 10.28324 11.30438 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.007238 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.902829 B = 3867.647980 C = 4685.472419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.152 4.152 6 C -0.091 4.091 7 C -0.115 4.115 8 C 0.603 3.397 9 O -0.547 6.547 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.084 4.084 13 H 0.081 0.919 14 C -0.113 4.113 15 H 0.078 0.922 16 C 0.116 3.884 17 C 0.179 3.821 18 H 0.072 0.928 19 C -0.132 4.132 20 C -0.104 4.104 21 C -0.094 4.094 22 H 0.067 0.933 23 C 0.128 3.872 24 N -0.596 5.596 25 C -0.313 4.313 26 H 0.072 0.928 27 C -0.013 4.013 28 N -0.920 5.920 29 Si 1.055 2.945 30 H -0.308 1.308 31 H -0.308 1.308 32 H -0.283 1.283 33 H 0.129 0.871 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.021 0.979 49 H 0.061 0.939 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.326 -8.921 -3.445 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 C -0.148 4.148 4 C -0.118 4.118 5 C -0.170 4.170 6 C -0.110 4.110 7 C -0.118 4.118 8 C 0.395 3.605 9 O -0.426 6.426 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.104 4.104 13 H 0.100 0.900 14 C -0.134 4.134 15 H 0.096 0.904 16 C -0.008 4.008 17 C 0.071 3.929 18 H 0.090 0.910 19 C -0.171 4.171 20 C -0.141 4.141 21 C -0.113 4.113 22 H 0.086 0.914 23 C 0.004 3.996 24 N -0.320 5.320 25 C -0.440 4.440 26 H 0.090 0.910 27 C -0.212 4.212 28 N -0.562 5.562 29 Si 0.893 3.107 30 H -0.237 1.237 31 H -0.238 1.238 32 H -0.211 1.211 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.078 0.922 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.047 -8.576 -3.862 11.181 hybrid contribution 1.722 -0.336 0.538 1.835 sum 7.769 -8.911 -3.324 12.281 Atomic orbital electron populations 1.21705 0.90479 1.01573 1.08008 1.19869 0.96966 0.90883 0.89953 1.20933 0.93856 0.97631 1.02410 1.21133 0.94363 0.97576 0.98683 1.20802 0.99080 0.92474 1.04685 1.21299 0.93205 0.98063 0.98432 1.19455 0.93175 0.92899 1.06299 1.17712 0.84208 0.82027 0.76579 1.90624 1.20487 1.83914 1.47571 1.48804 1.24065 1.07694 1.52636 1.22520 1.00388 0.82345 0.95987 1.22199 0.95665 0.98431 0.94067 0.90034 1.22974 0.96831 0.96383 0.97219 0.90369 1.22415 0.85767 1.01106 0.91496 1.20622 0.90844 0.91055 0.90367 0.91004 1.22067 0.97135 0.98147 0.99754 1.21379 0.98700 0.98354 0.95705 1.21439 0.96756 0.97816 0.95256 0.91428 1.22025 0.90005 0.89370 0.98197 1.44749 1.10214 1.02371 1.74679 1.20197 0.96417 0.79838 1.47597 0.90994 1.25432 1.00270 0.96283 0.99195 1.70773 1.28094 1.08724 1.48631 0.84076 0.77346 0.73347 0.75947 1.23715 1.23845 1.21096 0.85370 0.93660 0.89623 0.86195 0.86749 0.86722 0.86235 0.91765 0.90231 0.89036 0.92793 0.93105 0.92117 0.92926 0.92654 0.96256 0.92164 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.22 36.00 0.33 -3.41 16 2 C 0.02 0.52 5.91 -104.23 -0.62 -0.09 16 3 C -0.13 -2.48 9.66 -39.64 -0.38 -2.86 16 4 C -0.10 -1.63 10.04 -39.49 -0.40 -2.03 16 5 C -0.15 -2.41 10.03 -39.64 -0.40 -2.81 16 6 C -0.09 -1.59 7.88 -39.18 -0.31 -1.90 16 7 C -0.12 -2.38 5.61 -104.96 -0.59 -2.97 16 8 C 0.60 12.93 6.51 -12.33 -0.08 12.85 16 9 O -0.55 -13.18 13.77 5.32 0.07 -13.10 16 10 N -0.60 -10.88 1.99 -169.14 -0.34 -11.22 16 11 C 0.11 1.73 5.91 -1.57 -0.01 1.72 16 12 C -0.08 -1.20 3.26 -88.63 -0.29 -1.49 16 13 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.11 -1.64 3.20 -88.46 -0.28 -1.92 16 15 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 16 C 0.12 1.79 4.25 -2.39 -0.01 1.78 16 17 C 0.18 3.17 2.88 -66.98 -0.19 2.97 16 18 H 0.07 1.31 8.01 -51.92 -0.42 0.90 16 19 C -0.13 -2.08 5.85 -26.60 -0.16 -2.24 16 20 C -0.10 -1.59 5.64 -26.74 -0.15 -1.74 16 21 C -0.09 -1.57 2.66 -90.29 -0.24 -1.81 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 23 C 0.13 2.78 2.83 -3.10 -0.01 2.77 16 24 N -0.60 -13.03 1.97 -163.15 -0.32 -13.35 16 25 C -0.31 -8.05 10.26 -15.06 -0.15 -8.20 16 26 H 0.07 2.01 8.04 -52.49 -0.42 1.59 16 27 C -0.01 -0.36 4.49 -17.43 -0.08 -0.43 16 28 N -0.92 -26.24 11.73 55.49 0.65 -25.59 16 29 Si 1.06 27.45 23.58 -169.99 -4.01 23.44 16 30 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 31 H -0.31 -7.93 6.87 56.52 0.39 -7.54 16 32 H -0.28 -7.19 5.20 56.52 0.29 -6.90 16 33 H 0.13 3.39 3.69 -51.93 -0.19 3.20 16 34 H 0.04 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.09 2.04 5.39 -51.93 -0.28 1.76 16 36 H 0.12 2.14 8.05 -52.49 -0.42 1.71 16 37 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.12 1.80 5.64 -52.49 -0.30 1.51 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.40 6.99 -51.93 -0.36 1.03 16 42 H 0.09 1.61 5.75 -51.93 -0.30 1.31 16 43 H 0.05 0.68 7.87 -51.93 -0.41 0.28 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.02 0.49 3.32 -51.94 -0.17 0.31 16 49 H 0.06 1.47 3.54 -51.93 -0.18 1.29 16 50 H 0.26 7.54 8.73 -40.82 -0.36 7.19 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -30.23 352.60 -10.01 -40.24 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.37 Total: 6.08 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -4.01 Total: -11.82 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.01 Total: -50.16 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.01 Total: 23.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.23 -10.01 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.468 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds