Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37986 * 120.07104 * 2 1 4 4 C 1.38338 * 120.14248 * 180.27472 * 3 2 1 5 5 C 1.38377 * 120.29122 * 359.70424 * 4 3 2 6 6 C 1.37940 * 120.14739 * 359.97438 * 5 4 3 7 7 C 1.39548 * 120.07526 * 179.70579 * 2 1 3 8 8 C 1.47851 * 120.14456 * 0.02562 * 7 2 1 9 9 O 1.21550 * 119.99805 * 315.45396 * 8 7 2 10 10 N 1.34774 * 119.99644 * 135.44692 * 8 7 2 11 11 C 1.52782 * 126.52408 * 186.23976 * 10 8 7 12 12 C 1.49345 * 102.05247 * 203.74299 * 11 10 8 13 13 H 1.09005 * 105.94787 * 63.63096 * 12 11 10 14 14 C 1.56654 * 100.53912 * 316.05236 * 12 11 10 15 15 H 1.09000 * 109.22021 * 291.87808 * 14 12 11 16 16 C 1.49136 * 125.88535 * 4.70069 * 10 8 7 17 17 C 1.51957 * 103.67220 * 174.90467 * 14 12 11 18 18 H 1.09006 * 113.75044 * 207.76003 * 17 14 12 19 19 C 1.56084 * 103.62755 * 83.39950 * 17 14 12 20 20 C 1.53891 * 106.97107 * 322.06122 * 19 17 14 21 21 C 1.49098 * 130.13253 * 191.83862 * 12 11 10 22 22 H 1.09001 * 113.01200 * 329.25876 * 21 12 11 23 23 C 1.56826 * 103.16781 * 205.58830 * 21 12 11 24 24 N 1.49083 * 103.47114 * 323.28358 * 23 21 12 25 25 C 1.36934 * 122.59083 * 144.11058 * 24 23 21 26 26 H 1.08001 * 120.00137 * 320.64818 * 25 24 23 27 27 C 1.38812 * 119.99421 * 140.91821 * 25 24 23 28 28 N 1.31620 * 119.99612 * 170.31374 * 27 25 24 29 29 Si 1.86794 * 120.00291 * 350.31153 * 27 25 24 30 30 H 1.48499 * 109.47062 * 86.75007 * 29 27 25 31 31 H 1.48500 * 109.46993 * 206.74957 * 29 27 25 32 32 H 1.48501 * 109.47026 * 326.75284 * 29 27 25 33 33 H 1.09007 * 109.47124 * 273.83488 * 1 2 3 34 34 H 1.09003 * 109.47453 * 33.83085 * 1 2 3 35 35 H 1.09002 * 109.47407 * 153.83634 * 1 2 3 36 36 H 1.08001 * 119.92955 * 0.02562 * 3 2 1 37 37 H 1.07996 * 119.85321 * 179.71982 * 4 3 2 38 38 H 1.08000 * 119.93029 * 180.02562 * 5 4 3 39 39 H 1.08002 * 120.07330 * 180.02562 * 6 5 4 40 40 H 1.08996 * 111.58613 * 85.33773 * 11 10 8 41 41 H 1.09012 * 110.32164 * 321.57990 * 11 10 8 42 42 H 1.09005 * 110.29163 * 67.59519 * 16 10 8 43 43 H 1.09002 * 110.29153 * 305.47340 * 16 10 8 44 44 H 1.09000 * 109.94951 * 81.42967 * 19 17 14 45 45 H 1.09002 * 109.95279 * 202.69911 * 19 17 14 46 46 H 1.09004 * 109.53955 * 86.12393 * 20 19 17 47 47 H 1.09004 * 109.54236 * 206.37158 * 20 19 17 48 48 H 1.08999 * 110.72589 * 204.78460 * 23 21 12 49 49 H 1.08998 * 110.59537 * 81.72869 * 23 21 12 50 50 H 0.96999 * 120.00176 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1959 -0.0057 5 6 4.2812 0.0019 -0.0053 6 6 3.6022 -1.1988 0.0013 7 6 2.2063 -1.2076 0.0062 8 6 1.4720 -2.4908 0.0122 9 8 0.5187 -2.6420 0.7510 10 7 1.8595 -3.4928 -0.8016 11 6 1.1373 -4.8221 -1.0149 12 6 2.2449 -5.7070 -1.4845 13 1 2.9491 -5.7713 -0.6549 14 6 2.9604 -4.7549 -2.5022 15 1 2.3079 -4.5909 -3.3598 16 6 3.0617 -3.4868 -1.6841 17 6 4.1857 -5.5441 -2.9319 18 1 5.0251 -4.9196 -3.2378 19 6 3.6447 -6.4783 -4.0592 20 6 2.2366 -6.9288 -3.6321 21 6 2.1960 -7.0675 -2.0923 22 1 1.3521 -7.6612 -1.7407 23 6 3.5975 -7.6711 -1.7305 24 7 4.5171 -6.5026 -1.8382 25 6 5.5865 -6.3260 -1.0014 26 1 5.4961 -6.5644 0.0481 27 6 6.7850 -5.8352 -1.5010 28 7 7.7482 -5.4854 -0.6750 29 14 7.0308 -5.6712 -3.3454 30 1 6.5103 -4.3565 -3.7992 31 1 8.4785 -5.7666 -3.6623 32 1 6.2989 -6.7601 -4.0411 33 1 -0.3634 0.0687 1.0254 34 1 -0.3634 0.8537 -0.5721 35 1 -0.3634 -0.9224 -0.4531 36 1 1.6584 2.1295 0.0004 37 1 4.1182 2.1332 -0.0103 38 1 5.3612 0.0101 -0.0094 39 1 4.1494 -2.1300 0.0020 40 1 0.3594 -4.7385 -1.7738 41 1 0.7246 -5.1840 -0.0730 42 1 3.9715 -3.4959 -1.0838 43 1 3.0473 -2.6138 -2.3367 44 1 3.5909 -5.9321 -5.0010 45 1 4.2957 -7.3458 -4.1679 46 1 1.5042 -6.1870 -3.9507 47 1 2.0065 -7.8904 -4.0910 48 1 3.8788 -8.4470 -2.4424 49 1 3.5948 -8.0642 -0.7139 50 1 8.5859 -5.1428 -1.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087332481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 66.323741 kcal Electronic energy + Delta-G solvation = -31471.314493 eV Core-core repulsion = 27658.537167 eV Total energy + Delta-G solvation = -3812.777326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18771 -39.89382 -37.99972 -35.95901 -33.25549 -32.69748 -31.74757 -31.15251 -30.76087 -29.90603 -27.65637 -26.98036 -25.39726 -24.52298 -22.98455 -21.81510 -21.60197 -20.96284 -20.72735 -19.32302 -17.83715 -17.07024 -16.77948 -16.33146 -16.00004 -15.57134 -15.52783 -14.92559 -14.71299 -14.23243 -13.91558 -13.88438 -13.63909 -13.30534 -13.22085 -13.07619 -12.87638 -12.51490 -12.19917 -12.09902 -12.01810 -11.94393 -11.82303 -11.57832 -11.48487 -11.30533 -11.28007 -11.09923 -10.82061 -10.68299 -10.46650 -10.28999 -10.13589 -9.71105 -9.60867 -9.28938 -9.22584 -8.92095 -8.70591 -8.56529 -8.38975 -6.86342 -6.01673 -3.51793 1.02990 1.36763 2.90514 3.02433 3.19065 3.38961 3.42048 3.80079 4.42741 4.45432 4.61155 4.73089 4.80412 4.87695 5.03636 5.06641 5.16578 5.24902 5.25956 5.30225 5.44987 5.46011 5.48295 5.56026 5.63926 5.66900 5.67668 5.75532 5.77484 5.85595 5.89659 5.96977 6.04226 6.07524 6.11434 6.14089 6.18878 6.26987 6.28576 6.36335 6.43966 6.48139 6.51274 6.52186 6.60065 6.65782 6.74828 6.86407 6.91834 7.04612 7.72221 7.90830 8.28211 8.32193 8.78988 9.60205 10.09810 11.13627 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.004595 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.710421 B = 6092.434249 C = 7513.121560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.039 4.039 3 C -0.132 4.132 4 C -0.099 4.099 5 C -0.129 4.129 6 C -0.082 4.082 7 C -0.126 4.126 8 C 0.578 3.422 9 O -0.545 6.545 10 N -0.619 5.619 11 C 0.139 3.861 12 C -0.123 4.123 13 H 0.100 0.900 14 C -0.125 4.125 15 H 0.070 0.930 16 C 0.115 3.885 17 C 0.160 3.840 18 H 0.087 0.913 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.077 4.077 22 H 0.082 0.918 23 C 0.144 3.856 24 N -0.607 5.607 25 C -0.257 4.257 26 H 0.080 0.920 27 C 0.032 3.968 28 N -0.910 5.910 29 Si 0.887 3.113 30 H -0.285 1.285 31 H -0.306 1.306 32 H -0.262 1.262 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.034 0.966 49 H 0.057 0.943 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 7.650 -4.605 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.040 4.040 3 C -0.150 4.150 4 C -0.117 4.117 5 C -0.147 4.147 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.367 3.633 9 O -0.424 6.424 10 N -0.353 5.353 11 C 0.019 3.981 12 C -0.143 4.143 13 H 0.118 0.882 14 C -0.146 4.146 15 H 0.088 0.912 16 C -0.006 4.006 17 C 0.054 3.946 18 H 0.104 0.896 19 C -0.175 4.175 20 C -0.148 4.148 21 C -0.097 4.097 22 H 0.101 0.899 23 C 0.020 3.980 24 N -0.332 5.332 25 C -0.385 4.385 26 H 0.098 0.902 27 C -0.168 4.168 28 N -0.552 5.552 29 Si 0.719 3.281 30 H -0.214 1.214 31 H -0.234 1.234 32 H -0.187 1.187 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.076 0.924 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.039 7.662 -4.077 14.842 hybrid contribution 0.578 0.335 -1.079 1.269 sum -11.461 7.997 -5.157 14.896 Atomic orbital electron populations 1.20831 0.90630 1.02640 1.02879 1.19884 0.96297 0.91600 0.96211 1.20933 0.94281 0.97143 1.02691 1.21292 0.94172 0.98206 0.98038 1.21155 1.00441 0.92070 1.01051 1.21636 0.92897 0.99514 0.95955 1.19794 0.93932 0.92869 1.06255 1.17897 0.83357 0.82624 0.79446 1.90743 1.29314 1.82047 1.40281 1.50349 1.26588 1.16364 1.41988 1.21569 0.94082 0.81809 1.00637 1.21114 0.97378 0.94271 1.01496 0.88163 1.22792 1.00349 0.93912 0.97525 0.91215 1.21734 0.88205 0.98015 0.92679 1.21733 0.93630 0.90557 0.88675 0.89562 1.22910 0.96563 1.00324 0.97715 1.22067 0.96787 1.00288 0.95614 1.21513 0.99047 0.94668 0.94513 0.89934 1.22378 0.87260 0.89442 0.98965 1.45619 1.31161 1.19922 1.36514 1.18768 0.87333 1.41704 0.90730 0.90249 1.25500 0.95068 0.98991 0.97222 1.69755 1.05917 1.45501 1.34065 0.86921 0.75726 0.78040 0.87370 1.21386 1.23434 1.18707 0.90504 0.91879 0.91101 0.85703 0.85820 0.85301 0.84486 0.91727 0.90481 0.89757 0.91827 0.92668 0.90810 0.92539 0.92479 0.94814 0.92430 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.07 36.00 0.33 -1.07 16 2 C -0.04 -0.54 5.91 -104.23 -0.62 -1.15 16 3 C -0.13 -1.53 9.70 -39.64 -0.38 -1.92 16 4 C -0.10 -1.12 10.04 -39.49 -0.40 -1.51 16 5 C -0.13 -1.68 10.03 -39.64 -0.40 -2.08 16 6 C -0.08 -1.24 8.50 -39.18 -0.33 -1.58 16 7 C -0.13 -1.99 5.49 -104.97 -0.58 -2.56 16 8 C 0.58 10.19 6.68 -12.33 -0.08 10.11 16 9 O -0.54 -10.77 15.67 5.32 0.08 -10.68 16 10 N -0.62 -10.37 3.51 -170.29 -0.60 -10.97 16 11 C 0.14 2.13 6.99 -2.25 -0.02 2.11 16 12 C -0.12 -1.97 2.30 -92.37 -0.21 -2.18 16 13 H 0.10 1.99 6.06 -51.93 -0.31 1.67 16 14 C -0.12 -2.06 2.31 -90.06 -0.21 -2.27 16 15 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 16 C 0.12 1.92 5.12 -3.46 -0.02 1.90 16 17 C 0.16 3.06 2.82 -65.34 -0.18 2.88 16 18 H 0.09 1.85 3.43 -51.93 -0.18 1.67 16 19 C -0.14 -2.23 4.93 -24.62 -0.12 -2.35 16 20 C -0.11 -1.50 5.30 -25.40 -0.13 -1.63 16 21 C -0.08 -1.13 4.25 -89.60 -0.38 -1.51 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 23 C 0.14 2.57 5.84 -0.54 0.00 2.57 16 24 N -0.61 -12.94 1.40 -157.91 -0.22 -13.16 16 25 C -0.26 -6.68 10.21 -15.06 -0.15 -6.83 16 26 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 27 C 0.03 0.88 5.48 -17.43 -0.10 0.78 16 28 N -0.91 -26.63 13.97 55.49 0.78 -25.86 16 29 Si 0.89 21.03 24.61 -169.99 -4.18 16.85 16 30 H -0.29 -6.47 6.41 56.52 0.36 -6.11 16 31 H -0.31 -7.56 7.11 56.52 0.40 -7.16 16 32 H -0.26 -5.95 5.73 56.52 0.32 -5.62 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.14 2.24 5.78 -52.49 -0.30 1.94 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.21 8.12 -51.92 -0.42 0.79 16 42 H 0.08 1.60 6.30 -51.93 -0.33 1.27 16 43 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.32 6.39 -51.93 -0.33 0.99 16 46 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 49 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 50 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -30.13 367.90 -10.18 -40.31 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.59 Total: 6.26 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.99 Total: -8.29 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.04 Total: -49.99 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.18 Total: 16.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.13 -10.18 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.635 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds