Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37989 * 120.07009 * 2 1 4 4 C 1.38341 * 120.13920 * 180.27332 * 3 2 1 5 5 C 1.38376 * 120.29442 * 359.70534 * 4 3 2 6 6 C 1.37935 * 120.14853 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07683 * 179.70093 * 2 1 3 8 8 C 1.47847 * 120.14088 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99750 * 309.58864 * 8 7 2 10 10 N 1.34776 * 119.99628 * 129.59473 * 8 7 2 11 11 C 1.49400 * 125.93175 * 174.83098 * 10 8 7 12 12 C 1.49075 * 104.08574 * 174.02507 * 11 10 8 13 13 H 1.08995 * 106.97253 * 283.85724 * 12 11 10 14 14 C 1.55926 * 102.45790 * 33.25489 * 12 11 10 15 15 H 1.08998 * 109.45777 * 66.50450 * 14 12 11 16 16 C 1.49666 * 125.93897 * 354.80641 * 10 8 7 17 17 C 1.51057 * 104.46249 * 183.72671 * 14 12 11 18 18 H 1.09005 * 113.44795 * 155.96568 * 17 14 12 19 19 C 1.54560 * 109.00235 * 28.58905 * 17 14 12 20 20 C 1.56813 * 107.51717 * 285.63194 * 19 17 14 21 21 C 1.49347 * 128.19331 * 157.32126 * 12 11 10 22 22 H 1.09001 * 112.90929 * 31.28625 * 21 12 11 23 23 C 1.55140 * 109.57067 * 263.53972 * 21 12 11 24 24 N 1.48785 * 106.18628 * 290.99371 * 23 21 12 25 25 C 1.36933 * 123.52456 * 213.29252 * 24 23 21 26 26 H 1.08003 * 120.00119 * 162.72894 * 25 24 23 27 27 C 1.38814 * 119.99814 * 342.73126 * 25 24 23 28 28 N 1.31621 * 119.99763 * 349.43044 * 27 25 24 29 29 Si 1.86798 * 119.99859 * 169.43531 * 27 25 24 30 30 H 1.48503 * 109.47337 * 59.99581 * 29 27 25 31 31 H 1.48504 * 109.47191 * 179.97438 * 29 27 25 32 32 H 1.48505 * 109.47039 * 299.99457 * 29 27 25 33 33 H 1.09000 * 109.47358 * 264.83658 * 1 2 3 34 34 H 1.09003 * 109.47598 * 24.83771 * 1 2 3 35 35 H 1.09002 * 109.46810 * 144.83959 * 1 2 3 36 36 H 1.07993 * 119.92937 * 0.02562 * 3 2 1 37 37 H 1.08000 * 119.84561 * 179.72251 * 4 3 2 38 38 H 1.08001 * 119.92858 * 180.02562 * 5 4 3 39 39 H 1.08000 * 120.07867 * 180.02562 * 6 5 4 40 40 H 1.09004 * 110.39674 * 293.74608 * 11 10 8 41 41 H 1.08996 * 110.39655 * 56.03375 * 11 10 8 42 42 H 1.09002 * 110.74891 * 37.06520 * 16 10 8 43 43 H 1.08999 * 110.90792 * 273.78164 * 16 10 8 44 44 H 1.08998 * 109.58180 * 45.07058 * 19 17 14 45 45 H 1.09002 * 109.57725 * 165.46050 * 19 17 14 46 46 H 1.08997 * 110.40950 * 276.82360 * 20 19 17 47 47 H 1.09001 * 109.68688 * 155.24903 * 20 19 17 48 48 H 1.09004 * 110.10179 * 50.15553 * 23 21 12 49 49 H 1.08999 * 110.10839 * 171.70743 * 23 21 12 50 50 H 0.97005 * 119.99721 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1942 0.0000 4 6 3.5818 1.1959 -0.0057 5 6 4.2813 0.0019 -0.0053 6 6 3.6023 -1.1988 0.0013 7 6 2.2064 -1.2076 0.0063 8 6 1.4720 -2.4908 0.0124 9 8 0.5876 -2.6810 0.8243 10 7 1.7834 -3.4496 -0.8821 11 6 1.2071 -4.8273 -0.9269 12 6 1.7697 -5.4154 -2.1759 13 1 1.2188 -4.9792 -3.0092 14 6 3.1783 -4.7516 -2.2555 15 1 3.7935 -5.1049 -1.4280 16 6 2.7660 -3.3191 -2.0034 17 6 3.7552 -5.2461 -3.5611 18 1 4.5212 -4.5892 -3.9733 19 6 2.5988 -5.5336 -4.5454 20 6 1.9063 -6.8630 -4.0848 21 6 1.9399 -6.8582 -2.5221 22 1 1.1768 -7.4948 -2.0742 23 6 3.3902 -7.3029 -2.1973 24 7 4.2666 -6.6086 -3.1788 25 6 5.4182 -7.1526 -3.6818 26 1 5.8614 -6.7448 -4.5783 27 6 6.0158 -8.2283 -3.0395 28 7 5.6027 -8.5934 -1.8443 29 14 7.4065 -9.1576 -3.8713 30 1 8.5332 -8.2278 -4.1380 31 1 7.8697 -10.2542 -2.9834 32 1 6.9223 -9.7294 -5.1535 33 1 -0.3634 -0.0925 1.0235 34 1 -0.3634 0.9326 -0.4317 35 1 -0.3633 -0.8402 -0.5918 36 1 1.6584 2.1294 0.0004 37 1 4.1181 2.1333 -0.0102 38 1 5.3613 0.0101 -0.0094 39 1 4.1494 -2.1299 0.0021 40 1 1.5104 -5.3947 -0.0471 41 1 0.1201 -4.7824 -0.9929 42 1 3.6230 -2.7187 -1.6980 43 1 2.2927 -2.8923 -2.8877 44 1 1.8824 -4.7126 -4.5172 45 1 2.9962 -5.6394 -5.5549 46 1 2.4492 -7.7270 -4.4681 47 1 0.8749 -6.8810 -4.4370 48 1 3.6549 -7.0054 -1.1826 49 1 3.4843 -8.3833 -2.3070 50 1 6.0206 -9.3449 -1.3953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087332482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = 60.430765 kcal Electronic energy + Delta-G solvation = -30853.463897 eV Core-core repulsion = 27040.431033 eV Total energy + Delta-G solvation = -3813.032864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23639 -39.95895 -38.14235 -36.00075 -33.20435 -32.86750 -31.74510 -31.11499 -29.92311 -29.58423 -27.84993 -27.09861 -25.64368 -24.27288 -22.84066 -21.79873 -21.74593 -21.07109 -20.44860 -19.45589 -17.40841 -17.33753 -16.75759 -16.19540 -15.95069 -15.61448 -15.27846 -14.99641 -14.41550 -14.32974 -14.12494 -13.99053 -13.77103 -13.41308 -13.17507 -12.96476 -12.75330 -12.42317 -12.30852 -12.19000 -12.05840 -11.69256 -11.60173 -11.39146 -11.22082 -11.07834 -10.98372 -10.92397 -10.83798 -10.66699 -10.48992 -10.24720 -10.08252 -9.74269 -9.69553 -9.23884 -9.12186 -9.04435 -8.85546 -8.53029 -8.50642 -6.79236 -5.76332 -3.12385 0.88324 1.19003 2.75598 2.94898 3.37484 3.43318 3.43812 3.61792 4.34962 4.43611 4.63409 4.66781 4.73078 4.84199 4.95392 5.06207 5.10947 5.27553 5.37236 5.44346 5.46983 5.48113 5.56099 5.58902 5.60157 5.66301 5.69918 5.75451 5.82196 5.85069 5.91501 6.01782 6.05756 6.13044 6.16583 6.18057 6.24618 6.28469 6.32647 6.36271 6.42067 6.47157 6.66720 6.73039 6.74076 6.90782 7.00655 7.06130 7.41009 7.57410 7.60421 7.77893 8.19760 8.25135 9.15009 9.75955 10.41744 11.33639 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003225 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.887580 B = 8681.267184 C = 9502.942442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.099 4.099 5 C -0.130 4.130 6 C -0.083 4.083 7 C -0.122 4.122 8 C 0.575 3.425 9 O -0.540 6.540 10 N -0.616 5.616 11 C 0.134 3.866 12 C -0.119 4.119 13 H 0.068 0.932 14 C -0.124 4.124 15 H 0.093 0.907 16 C 0.112 3.888 17 C 0.176 3.824 18 H 0.075 0.925 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.102 4.102 22 H 0.076 0.924 23 C 0.189 3.811 24 N -0.598 5.598 25 C -0.234 4.234 26 H 0.070 0.930 27 C -0.004 4.004 28 N -0.915 5.915 29 Si 0.906 3.094 30 H -0.285 1.285 31 H -0.291 1.291 32 H -0.286 1.286 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.038 0.962 48 H 0.024 0.976 49 H 0.078 0.922 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 16.269 0.388 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.040 4.040 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.125 4.125 8 C 0.364 3.636 9 O -0.418 6.418 10 N -0.350 5.350 11 C 0.013 3.987 12 C -0.137 4.137 13 H 0.086 0.914 14 C -0.144 4.144 15 H 0.112 0.888 16 C -0.010 4.010 17 C 0.069 3.931 18 H 0.093 0.907 19 C -0.168 4.168 20 C -0.130 4.130 21 C -0.122 4.122 22 H 0.094 0.906 23 C 0.064 3.936 24 N -0.323 5.323 25 C -0.363 4.363 26 H 0.088 0.912 27 C -0.201 4.201 28 N -0.561 5.561 29 Si 0.736 3.264 30 H -0.212 1.212 31 H -0.217 1.217 32 H -0.212 1.212 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.096 0.904 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.059 16.039 0.947 17.975 hybrid contribution 0.944 -0.495 -0.351 1.122 sum -7.115 15.544 0.596 17.105 Atomic orbital electron populations 1.20819 0.90558 1.02340 1.03311 1.19915 0.96356 0.91628 0.96141 1.20980 0.94301 0.97204 1.02155 1.21292 0.94196 0.98236 0.98038 1.21105 1.00268 0.92085 1.01297 1.21358 0.92711 0.98979 0.97052 1.19789 0.93930 0.92946 1.05876 1.17936 0.82602 0.82829 0.80282 1.90769 1.31529 1.80536 1.38990 1.49754 1.42483 1.13063 1.29686 1.20961 0.97596 0.81310 0.98812 1.21217 0.97490 0.98282 0.96756 0.91398 1.22492 0.97317 0.92509 1.02113 0.88834 1.21936 0.91678 0.98553 0.88842 1.21030 0.93485 0.88074 0.90517 0.90682 1.23080 0.97701 0.96575 0.99458 1.22692 0.97491 0.98400 0.94466 1.21930 1.00978 0.92973 0.96282 0.90582 1.21489 0.83051 0.97692 0.91346 1.45687 1.24418 1.11045 1.51122 1.19079 1.00166 1.12085 1.04985 0.91188 1.24887 0.98719 1.00747 0.95746 1.69948 1.44109 1.29431 1.12607 0.86308 0.82046 0.79536 0.78480 1.21161 1.21732 1.21231 0.90230 0.91643 0.91438 0.85572 0.85727 0.85382 0.85088 0.91159 0.91367 0.90246 0.91338 0.93415 0.92644 0.90798 0.94277 0.95769 0.90376 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.90 36.01 0.32 -0.93 16 2 C -0.04 -0.47 5.91 -104.22 -0.62 -1.09 16 3 C -0.13 -1.25 9.67 -39.63 -0.38 -1.63 16 4 C -0.10 -0.90 10.04 -39.49 -0.40 -1.30 16 5 C -0.13 -1.31 10.03 -39.64 -0.40 -1.70 16 6 C -0.08 -1.00 7.97 -39.18 -0.31 -1.32 16 7 C -0.12 -1.67 5.29 -104.97 -0.55 -2.22 16 8 C 0.58 9.17 6.43 -12.33 -0.08 9.09 16 9 O -0.54 -10.08 16.26 5.32 0.09 -9.99 16 10 N -0.62 -9.36 3.43 -173.09 -0.59 -9.95 16 11 C 0.13 2.07 6.87 -4.36 -0.03 2.04 16 12 C -0.12 -1.86 2.16 -92.78 -0.20 -2.06 16 13 H 0.07 1.02 5.07 -51.93 -0.26 0.76 16 14 C -0.12 -2.06 2.28 -90.95 -0.21 -2.26 16 15 H 0.09 1.87 6.54 -51.93 -0.34 1.53 16 16 C 0.11 1.56 6.35 -3.20 -0.02 1.54 16 17 C 0.18 3.21 4.35 -65.86 -0.29 2.93 16 18 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.13 -2.09 5.77 -23.85 -0.14 -2.23 16 20 C -0.09 -1.57 5.60 -22.89 -0.13 -1.70 16 21 C -0.10 -1.77 4.24 -89.51 -0.38 -2.15 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 C 0.19 4.19 3.96 -1.65 -0.01 4.19 16 24 N -0.60 -13.67 2.25 -159.59 -0.36 -14.03 16 25 C -0.23 -6.06 10.10 -15.06 -0.15 -6.21 16 26 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 27 C 0.00 -0.10 5.28 -17.43 -0.09 -0.19 16 28 N -0.91 -25.63 10.73 55.49 0.60 -25.04 16 29 Si 0.91 21.28 29.57 -169.99 -5.03 16.26 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 31 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 32 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.60 7.03 -52.49 -0.37 1.23 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.03 5.19 -51.93 -0.27 0.76 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.68 6.61 -51.93 -0.34 0.34 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.45 7.71 -51.93 -0.40 1.05 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.02 0.60 7.10 -51.93 -0.37 0.23 16 49 H 0.08 1.98 6.69 -51.93 -0.35 1.63 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -29.75 377.32 -11.36 -41.11 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.69 Total: 3.18 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -4.06 Total: -7.21 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.36 Total: -49.02 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.75 -11.36 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.536 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds