Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37989 * 120.07009 * 2 1 4 4 C 1.38341 * 120.13920 * 180.27332 * 3 2 1 5 5 C 1.38376 * 120.29442 * 359.70534 * 4 3 2 6 6 C 1.37935 * 120.14853 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07683 * 179.70093 * 2 1 3 8 8 C 1.47847 * 120.14088 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99750 * 309.58864 * 8 7 2 10 10 N 1.34776 * 119.99628 * 129.59473 * 8 7 2 11 11 C 1.49400 * 125.93175 * 174.83098 * 10 8 7 12 12 C 1.49075 * 104.08574 * 174.02507 * 11 10 8 13 13 H 1.08995 * 106.97253 * 283.85724 * 12 11 10 14 14 C 1.55926 * 102.45790 * 33.25489 * 12 11 10 15 15 H 1.08998 * 109.45777 * 66.50450 * 14 12 11 16 16 C 1.49666 * 125.93897 * 354.80641 * 10 8 7 17 17 C 1.51057 * 104.46249 * 183.72671 * 14 12 11 18 18 H 1.09005 * 113.44795 * 155.96568 * 17 14 12 19 19 C 1.54560 * 109.00235 * 28.58905 * 17 14 12 20 20 C 1.56813 * 107.51717 * 285.63194 * 19 17 14 21 21 C 1.49347 * 128.19331 * 157.32126 * 12 11 10 22 22 H 1.09001 * 112.90929 * 31.28625 * 21 12 11 23 23 C 1.55140 * 109.57067 * 263.53972 * 21 12 11 24 24 N 1.48785 * 106.18628 * 290.99371 * 23 21 12 25 25 C 1.36933 * 123.52456 * 213.29252 * 24 23 21 26 26 H 1.08003 * 120.00119 * 162.72894 * 25 24 23 27 27 C 1.38814 * 119.99814 * 342.73126 * 25 24 23 28 28 N 1.31621 * 119.99763 * 349.43044 * 27 25 24 29 29 Si 1.86798 * 119.99859 * 169.43531 * 27 25 24 30 30 H 1.48503 * 109.47337 * 59.99581 * 29 27 25 31 31 H 1.48504 * 109.47191 * 179.97438 * 29 27 25 32 32 H 1.48505 * 109.47039 * 299.99457 * 29 27 25 33 33 H 1.09000 * 109.47358 * 264.83658 * 1 2 3 34 34 H 1.09003 * 109.47598 * 24.83771 * 1 2 3 35 35 H 1.09002 * 109.46810 * 144.83959 * 1 2 3 36 36 H 1.07993 * 119.92937 * 0.02562 * 3 2 1 37 37 H 1.08000 * 119.84561 * 179.72251 * 4 3 2 38 38 H 1.08001 * 119.92858 * 180.02562 * 5 4 3 39 39 H 1.08000 * 120.07867 * 180.02562 * 6 5 4 40 40 H 1.09004 * 110.39674 * 293.74608 * 11 10 8 41 41 H 1.08996 * 110.39655 * 56.03375 * 11 10 8 42 42 H 1.09002 * 110.74891 * 37.06520 * 16 10 8 43 43 H 1.08999 * 110.90792 * 273.78164 * 16 10 8 44 44 H 1.08998 * 109.58180 * 45.07058 * 19 17 14 45 45 H 1.09002 * 109.57725 * 165.46050 * 19 17 14 46 46 H 1.08997 * 110.40950 * 276.82360 * 20 19 17 47 47 H 1.09001 * 109.68688 * 155.24903 * 20 19 17 48 48 H 1.09004 * 110.10179 * 50.15553 * 23 21 12 49 49 H 1.08999 * 110.10839 * 171.70743 * 23 21 12 50 50 H 0.97005 * 119.99721 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1942 0.0000 4 6 3.5818 1.1959 -0.0057 5 6 4.2813 0.0019 -0.0053 6 6 3.6023 -1.1988 0.0013 7 6 2.2064 -1.2076 0.0063 8 6 1.4720 -2.4908 0.0124 9 8 0.5876 -2.6810 0.8243 10 7 1.7834 -3.4496 -0.8821 11 6 1.2071 -4.8273 -0.9269 12 6 1.7697 -5.4154 -2.1759 13 1 1.2188 -4.9792 -3.0092 14 6 3.1783 -4.7516 -2.2555 15 1 3.7935 -5.1049 -1.4280 16 6 2.7660 -3.3191 -2.0034 17 6 3.7552 -5.2461 -3.5611 18 1 4.5212 -4.5892 -3.9733 19 6 2.5988 -5.5336 -4.5454 20 6 1.9063 -6.8630 -4.0848 21 6 1.9399 -6.8582 -2.5221 22 1 1.1768 -7.4948 -2.0742 23 6 3.3902 -7.3029 -2.1973 24 7 4.2666 -6.6086 -3.1788 25 6 5.4182 -7.1526 -3.6818 26 1 5.8614 -6.7448 -4.5783 27 6 6.0158 -8.2283 -3.0395 28 7 5.6027 -8.5934 -1.8443 29 14 7.4065 -9.1576 -3.8713 30 1 8.5332 -8.2278 -4.1380 31 1 7.8697 -10.2542 -2.9834 32 1 6.9223 -9.7294 -5.1535 33 1 -0.3634 -0.0925 1.0235 34 1 -0.3634 0.9326 -0.4317 35 1 -0.3633 -0.8402 -0.5918 36 1 1.6584 2.1294 0.0004 37 1 4.1181 2.1333 -0.0102 38 1 5.3613 0.0101 -0.0094 39 1 4.1494 -2.1299 0.0021 40 1 1.5104 -5.3947 -0.0471 41 1 0.1201 -4.7824 -0.9929 42 1 3.6230 -2.7187 -1.6980 43 1 2.2927 -2.8923 -2.8877 44 1 1.8824 -4.7126 -4.5172 45 1 2.9962 -5.6394 -5.5549 46 1 2.4492 -7.7270 -4.4681 47 1 0.8749 -6.8810 -4.4370 48 1 3.6549 -7.0054 -1.1826 49 1 3.4843 -8.3833 -2.3070 50 1 6.0206 -9.3449 -1.3953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087332482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = 45.812237 kcal Electronic energy + Delta-G solvation = -30854.097804 eV Core-core repulsion = 27040.431033 eV Total energy + Delta-G solvation = -3813.666771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60626 -41.03605 -39.21618 -37.40727 -34.99598 -33.70226 -32.94589 -32.46844 -31.48382 -30.98156 -29.22171 -27.96961 -27.31096 -25.55377 -23.96282 -23.51029 -22.75044 -22.36745 -21.84460 -20.54931 -19.09727 -18.46560 -18.21717 -17.52741 -17.00371 -16.78420 -16.65515 -16.32059 -16.00662 -15.77064 -15.45216 -15.06214 -14.71917 -14.57325 -14.30500 -14.21946 -14.07235 -13.79110 -13.72336 -13.20567 -13.16246 -12.94867 -12.92169 -12.77711 -12.65905 -12.57090 -12.35485 -12.32848 -12.19741 -12.13317 -12.09191 -11.99349 -11.79541 -11.28506 -10.99180 -10.72669 -10.62337 -10.43910 -9.98834 -9.72835 -9.65779 -8.70967 -7.79430 -5.16135 0.00474 0.38550 1.47582 1.49284 1.55418 1.61242 1.77853 2.51759 2.76901 3.16457 3.34092 3.42040 3.51808 3.64549 3.86801 3.88217 4.05173 4.13420 4.15246 4.23548 4.28281 4.35523 4.38562 4.43939 4.48261 4.50755 4.59338 4.69065 4.70246 4.73572 4.75239 4.79558 4.83370 4.89224 4.96889 4.99832 5.03160 5.08485 5.22219 5.24435 5.31165 5.38825 5.42769 5.51185 5.52103 5.53843 5.55052 5.67418 5.70236 5.85018 5.97336 6.29382 6.37791 6.98152 7.14138 7.82084 8.46548 9.28458 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003225 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.887580 B = 8681.267184 C = 9502.942442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.131 4.131 6 C -0.096 4.096 7 C -0.148 4.148 8 C 0.573 3.427 9 O -0.576 6.576 10 N -0.617 5.617 11 C 0.134 3.866 12 C -0.108 4.108 13 H 0.092 0.908 14 C -0.114 4.114 15 H 0.050 0.950 16 C 0.123 3.877 17 C 0.172 3.828 18 H 0.080 0.920 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.093 4.093 22 H 0.090 0.910 23 C 0.200 3.800 24 N -0.614 5.614 25 C -0.235 4.235 26 H 0.076 0.924 27 C -0.062 4.062 28 N -0.947 5.947 29 Si 0.965 3.035 30 H -0.278 1.278 31 H -0.301 1.301 32 H -0.280 1.280 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.072 0.928 48 H -0.013 1.013 49 H 0.038 0.962 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 19.892 -1.477 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.148 4.148 6 C -0.114 4.114 7 C -0.150 4.150 8 C 0.363 3.637 9 O -0.457 6.457 10 N -0.350 5.350 11 C 0.013 3.987 12 C -0.127 4.127 13 H 0.110 0.890 14 C -0.134 4.134 15 H 0.069 0.931 16 C 0.002 3.998 17 C 0.066 3.934 18 H 0.098 0.902 19 C -0.159 4.159 20 C -0.127 4.127 21 C -0.113 4.113 22 H 0.108 0.892 23 C 0.076 3.924 24 N -0.339 5.339 25 C -0.365 4.365 26 H 0.094 0.906 27 C -0.256 4.256 28 N -0.596 5.596 29 Si 0.795 3.205 30 H -0.204 1.204 31 H -0.228 1.228 32 H -0.206 1.206 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.005 0.995 49 H 0.056 0.944 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.787 19.695 -0.959 21.588 hybrid contribution 1.206 -1.545 0.263 1.978 sum -7.581 18.150 -0.696 19.682 Atomic orbital electron populations 1.20792 0.90276 1.03031 1.02551 1.20144 0.96824 0.91889 0.96523 1.21347 0.94814 0.97392 1.00607 1.21723 0.94153 0.99141 0.95771 1.21395 1.01398 0.91657 1.00388 1.21345 0.92234 0.99638 0.98211 1.19730 0.94429 0.92264 1.08625 1.18406 0.82181 0.83619 0.79470 1.90734 1.33333 1.81393 1.40262 1.49784 1.42458 1.12757 1.30009 1.20915 0.98314 0.81574 0.97884 1.21071 0.97118 0.96844 0.97638 0.89027 1.22197 0.96987 0.94612 0.99642 0.93138 1.21912 0.92022 0.96552 0.89322 1.21280 0.94485 0.85870 0.91722 0.90178 1.22984 0.97199 0.97135 0.98536 1.22634 0.99091 0.97664 0.93304 1.21808 0.97690 0.94444 0.97356 0.89192 1.21132 0.86345 0.95334 0.89631 1.45919 1.23882 1.13374 1.50753 1.19454 1.00547 1.11684 1.04771 0.90641 1.25597 1.01382 1.02165 0.96430 1.70158 1.45533 1.29795 1.14102 0.85350 0.79728 0.78072 0.77362 1.20354 1.22795 1.20637 0.91279 0.88701 0.93385 0.82565 0.82291 0.83388 0.86269 0.93168 0.90104 0.89350 0.88718 0.89963 0.92299 0.94003 0.90895 0.99529 0.94393 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.90 71.24 0.63 -1.62 16 2 C -0.05 -1.17 5.91 -19.61 -0.12 -1.28 16 3 C -0.12 -1.95 9.67 22.24 0.21 -1.73 16 4 C -0.09 -1.27 10.04 22.33 0.22 -1.05 16 5 C -0.13 -2.28 10.03 22.23 0.22 -2.06 16 6 C -0.10 -2.24 7.97 22.53 0.18 -2.06 16 7 C -0.15 -3.91 5.29 -20.09 -0.11 -4.02 16 8 C 0.57 18.39 6.43 86.79 0.56 18.94 16 9 O -0.58 -22.04 16.26 -3.88 -0.06 -22.10 16 10 N -0.62 -18.54 3.43 -819.83 -2.81 -21.35 16 11 C 0.13 4.13 6.87 84.57 0.58 4.72 16 12 C -0.11 -3.27 2.16 -12.20 -0.03 -3.30 16 13 H 0.09 2.42 5.07 -2.39 -0.01 2.40 16 14 C -0.11 -3.75 2.28 -11.01 -0.03 -3.78 16 15 H 0.05 2.13 6.54 -2.39 -0.02 2.11 16 16 C 0.12 3.25 6.35 85.17 0.54 3.79 16 17 C 0.17 6.12 4.35 44.11 0.19 6.31 16 18 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 19 C -0.12 -3.54 5.77 32.46 0.19 -3.36 16 20 C -0.09 -2.87 5.60 33.08 0.19 -2.69 16 21 C -0.09 -3.24 4.24 -10.08 -0.04 -3.28 16 22 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 23 C 0.20 9.44 3.96 86.67 0.34 9.78 16 24 N -0.61 -28.88 2.25 -658.82 -1.48 -30.36 16 25 C -0.23 -12.42 10.10 84.03 0.85 -11.58 16 26 H 0.08 3.83 7.85 -2.91 -0.02 3.81 16 27 C -0.06 -3.44 5.28 84.86 0.45 -3.00 16 28 N -0.95 -56.23 10.73 21.65 0.23 -55.99 16 29 Si 0.97 45.01 29.57 68.60 2.03 47.04 16 30 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 31 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 32 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 35 H 0.05 1.16 7.10 -2.39 -0.02 1.14 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.12 2.97 7.03 -2.91 -0.02 2.95 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.09 2.21 5.19 -2.39 -0.01 2.19 16 43 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 1.93 6.61 -2.39 -0.02 1.92 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.62 7.71 -2.39 -0.02 1.60 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H -0.01 -0.71 7.10 -2.38 -0.02 -0.73 16 49 H 0.04 2.06 6.69 -2.39 -0.02 2.05 16 50 H 0.24 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -69.74 377.32 3.88 -65.86 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.94 Total: 18.15 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.04 Total: -1.25 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.07 Total: -107.71 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.74 3.88 -65.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087332482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.675 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds