Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38361 * 119.84969 * 2 1 4 4 C 1.37961 * 120.14360 * 179.97438 * 3 2 1 5 5 C 1.39579 * 119.85193 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14037 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00244 * 335.84988 * 6 5 4 8 8 N 1.34778 * 119.99824 * 155.85823 * 6 5 4 9 9 C 1.49015 * 125.87204 * 173.97759 * 8 6 5 10 10 C 1.52145 * 105.20127 * 187.20607 * 9 8 6 11 11 H 1.09001 * 110.84085 * 84.03228 * 10 9 8 12 12 C 1.56306 * 99.31041 * 327.05118 * 10 9 8 13 13 H 1.09000 * 104.17662 * 297.57375 * 12 10 9 14 14 C 1.49319 * 101.42629 * 47.60107 * 12 10 9 15 15 C 1.49076 * 106.89844 * 185.36875 * 12 10 9 16 16 H 1.09006 * 114.08964 * 210.64561 * 15 12 10 17 17 C 1.58456 * 101.67642 * 86.52418 * 15 12 10 18 18 C 1.54065 * 105.58119 * 325.17224 * 17 15 12 19 19 C 1.53075 * 119.66118 * 215.57411 * 10 9 8 20 20 H 1.09003 * 113.68029 * 317.43235 * 19 10 9 21 21 C 1.56702 * 102.06144 * 193.74300 * 19 10 9 22 22 N 1.49410 * 108.24250 * 339.54675 * 15 12 10 23 23 C 1.36932 * 122.70084 * 249.81714 * 22 15 12 24 24 H 1.08003 * 120.00185 * 34.25496 * 23 22 15 25 25 C 1.38811 * 120.00213 * 214.24893 * 23 22 15 26 26 N 1.31622 * 119.99902 * 355.12982 * 25 23 22 27 27 Si 1.86803 * 120.00372 * 175.13341 * 25 23 22 28 28 H 1.48492 * 109.47077 * 89.99893 * 27 25 23 29 29 H 1.48494 * 109.47151 * 210.00292 * 27 25 23 30 30 H 1.48504 * 109.46535 * 329.99912 * 27 25 23 31 31 C 1.39579 * 119.71096 * 0.25544 * 5 4 3 32 32 C 1.37952 * 119.85041 * 359.46893 * 31 5 4 33 33 H 1.08998 * 109.47418 * 90.00259 * 1 2 3 34 34 H 1.09008 * 109.46958 * 210.00145 * 1 2 3 35 35 H 1.09003 * 109.47629 * 329.99994 * 1 2 3 36 36 H 1.08002 * 119.92866 * 359.97438 * 3 2 1 37 37 H 1.07999 * 120.07206 * 180.02562 * 4 3 2 38 38 H 1.09001 * 110.29684 * 68.27213 * 9 8 6 39 39 H 1.09000 * 110.29488 * 306.13916 * 9 8 6 40 40 H 1.09005 * 110.90180 * 74.58956 * 14 12 10 41 41 H 1.08994 * 110.90607 * 198.18970 * 14 12 10 42 42 H 1.08998 * 110.09104 * 206.20028 * 17 15 12 43 43 H 1.09005 * 110.41104 * 84.30414 * 17 15 12 44 44 H 1.09001 * 109.40989 * 202.72115 * 18 17 15 45 45 H 1.09001 * 109.35691 * 82.89494 * 18 17 15 46 46 H 1.09001 * 110.30871 * 80.71550 * 21 19 10 47 47 H 1.09004 * 110.30713 * 202.92152 * 21 19 10 48 48 H 0.96994 * 119.99778 * 179.97438 * 26 25 23 49 49 H 1.07999 * 120.06731 * 179.72520 * 31 5 4 50 50 H 1.08002 * 119.92847 * 180.27689 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 0.0001 0.0005 6 6 5.7546 0.0003 0.0005 7 8 6.3623 0.9608 -0.4301 8 7 6.4286 -1.0648 0.4779 9 6 7.9052 -1.2587 0.4260 10 6 8.1389 -2.6778 0.9224 11 1 8.0155 -3.3971 0.1127 12 6 6.9678 -2.7815 1.9524 13 1 7.1945 -2.0141 2.6925 14 6 5.8218 -2.2577 1.1511 15 6 7.1188 -4.0904 2.6498 16 1 6.1769 -4.5333 2.9737 17 6 8.1142 -3.7150 3.8242 18 6 9.0653 -2.6545 3.2374 19 6 9.3811 -2.9925 1.7596 20 1 10.2905 -2.5199 1.3885 21 6 9.4077 -4.5590 1.7300 22 7 7.9645 -4.9797 1.7976 23 6 7.4640 -6.0769 1.1490 24 1 6.4557 -6.0623 0.7623 25 6 8.2526 -7.2079 0.9883 26 7 9.5112 -7.1927 1.3733 27 14 7.5278 -8.7514 0.2256 28 1 7.7189 -8.7128 -1.2465 29 1 8.2112 -9.9464 0.7823 30 1 6.0770 -8.8219 0.5348 31 6 3.5753 -1.2069 -0.0054 32 6 2.1958 -1.1999 -0.0002 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3634 0.8900 0.5138 36 1 1.6520 2.1333 -0.0004 37 1 4.1116 2.1445 0.0010 38 1 8.4037 -0.5427 1.0794 39 1 8.2648 -1.1520 -0.5974 40 1 5.4924 -2.9929 0.4169 41 1 4.9974 -1.9610 1.7994 42 1 8.6766 -4.5957 4.1342 43 1 7.5652 -3.3019 4.6705 44 1 9.9916 -2.6412 3.8118 45 1 8.5913 -1.6745 3.2916 46 1 9.8459 -4.9124 0.7966 47 1 9.9678 -4.9441 2.5822 48 1 10.0621 -7.9831 1.2614 49 1 4.1119 -2.1442 -0.0099 50 1 1.6522 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087408040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = 64.774518 kcal Electronic energy + Delta-G solvation = -30629.026794 eV Core-core repulsion = 26816.182289 eV Total energy + Delta-G solvation = -3812.844505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14128 -39.82563 -38.25497 -35.94685 -33.29465 -32.95793 -31.32446 -30.94678 -30.12804 -29.90364 -27.89297 -27.05167 -25.38900 -24.06368 -22.82971 -22.05022 -21.77603 -20.79766 -20.34935 -19.63110 -17.50289 -17.18143 -16.78192 -16.38480 -15.63236 -15.45963 -15.07646 -14.83514 -14.74218 -14.30434 -14.21285 -13.93420 -13.82826 -13.57746 -13.15191 -12.92964 -12.57861 -12.51932 -12.47547 -12.19537 -12.04845 -11.79717 -11.57697 -11.29601 -11.25327 -11.04084 -10.99735 -10.93265 -10.73503 -10.59631 -10.38849 -10.26769 -10.17573 -9.77810 -9.62328 -9.24116 -9.09743 -8.99163 -8.85261 -8.51371 -8.45745 -6.61865 -5.85811 -3.30951 0.79375 1.24515 2.85928 3.01100 3.33908 3.41586 3.41892 3.74007 4.39584 4.43462 4.63018 4.64437 4.78509 4.86303 4.92286 5.07067 5.20594 5.26005 5.31414 5.32238 5.43534 5.46566 5.49820 5.52065 5.55114 5.66216 5.70673 5.77022 5.80771 5.84891 5.87688 5.90859 6.13222 6.14022 6.18188 6.21051 6.23692 6.33617 6.37033 6.40124 6.46374 6.52041 6.59942 6.68447 6.76696 6.93260 7.02905 7.09398 7.33497 7.58218 7.64425 7.76522 8.25791 8.31222 9.10119 9.70905 10.44814 11.25800 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.003426 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.700425 B = 8171.737860 C = 9512.907740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.061 4.061 5 C -0.132 4.132 6 C 0.570 3.430 7 O -0.549 6.549 8 N -0.615 5.615 9 C 0.118 3.882 10 C -0.086 4.086 11 H 0.099 0.901 12 C -0.147 4.147 13 H 0.070 0.930 14 C 0.122 3.878 15 C 0.185 3.815 16 H 0.080 0.920 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.111 4.111 20 H 0.079 0.921 21 C 0.187 3.813 22 N -0.592 5.592 23 C -0.249 4.249 24 H 0.064 0.936 25 C 0.014 3.986 26 N -0.903 5.903 27 Si 0.898 3.102 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.279 1.279 31 C -0.089 4.089 32 C -0.129 4.129 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.254 0.746 49 H 0.142 0.858 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 12.790 1.035 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.135 4.135 6 C 0.360 3.640 7 O -0.429 6.429 8 N -0.349 5.349 9 C -0.003 4.003 10 C -0.105 4.105 11 H 0.117 0.883 12 C -0.168 4.168 13 H 0.088 0.912 14 C 0.001 3.999 15 C 0.077 3.923 16 H 0.098 0.902 17 C -0.171 4.171 18 C -0.149 4.149 19 C -0.131 4.131 20 H 0.097 0.903 21 C 0.064 3.936 22 N -0.316 5.316 23 C -0.378 4.378 24 H 0.082 0.918 25 C -0.186 4.186 26 N -0.546 5.546 27 Si 0.728 3.272 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.204 1.204 31 C -0.108 4.108 32 C -0.147 4.147 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.160 0.840 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.613 13.173 0.748 17.577 hybrid contribution -0.249 -0.869 -0.416 0.995 sum -11.862 12.304 0.332 17.094 Atomic orbital electron populations 1.20851 0.91021 1.03000 1.02532 1.20141 0.96252 0.93237 0.97126 1.20978 0.93765 0.97733 1.02578 1.21211 0.93856 0.97471 0.95464 1.19915 0.92815 0.94487 1.06275 1.17990 0.86831 0.81498 0.77708 1.90746 1.69958 1.33777 1.48375 1.49668 1.08262 1.19106 1.57850 1.21836 0.79215 0.98187 1.01106 1.22275 0.96315 0.93406 0.98489 0.88252 1.22329 0.94641 1.01523 0.98331 0.91194 1.21549 0.96380 0.86375 0.95566 1.21079 0.94034 0.88071 0.89068 0.90152 1.23387 0.97850 0.98667 0.97231 1.22151 0.98609 0.97969 0.96124 1.22801 0.95776 1.01250 0.93264 0.90301 1.22129 0.85302 0.85669 1.00535 1.45645 1.04046 1.28534 1.53406 1.18975 0.99010 0.89835 1.30002 0.91790 1.25314 0.96399 0.97302 0.99559 1.69906 1.05691 1.28722 1.50310 0.86372 0.78734 0.83506 0.78625 1.21532 1.21634 1.20426 1.21929 0.94597 0.98259 0.95968 1.21036 0.93933 0.97803 1.01914 0.90905 0.91241 0.91409 0.85596 0.85080 0.91882 0.91527 0.90679 0.90626 0.90771 0.93298 0.93030 0.93039 0.91933 0.94448 0.93542 0.84019 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.00 36.00 0.36 -0.42 16 2 C -0.07 -0.64 5.89 -104.53 -0.62 -1.26 16 3 C -0.13 -1.33 9.68 -39.64 -0.38 -1.71 16 4 C -0.06 -0.75 9.59 -39.18 -0.38 -1.13 16 5 C -0.13 -1.83 5.70 -104.97 -0.60 -2.43 16 6 C 0.57 9.44 7.66 -12.33 -0.09 9.34 16 7 O -0.55 -10.70 16.96 5.32 0.09 -10.61 16 8 N -0.62 -9.66 3.42 -172.60 -0.59 -10.25 16 9 C 0.12 1.88 6.56 -3.08 -0.02 1.86 16 10 C -0.09 -1.45 2.41 -89.24 -0.22 -1.66 16 11 H 0.10 1.99 7.27 -51.93 -0.38 1.61 16 12 C -0.15 -2.34 2.33 -92.59 -0.22 -2.55 16 13 H 0.07 1.09 4.68 -51.93 -0.24 0.85 16 14 C 0.12 1.76 4.81 -4.01 -0.02 1.74 16 15 C 0.19 3.38 4.67 -65.23 -0.30 3.08 16 16 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 17 C -0.13 -2.24 5.62 -23.16 -0.13 -2.37 16 18 C -0.11 -1.74 5.29 -25.20 -0.13 -1.88 16 19 C -0.11 -1.90 4.29 -87.61 -0.38 -2.28 16 20 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 21 C 0.19 4.07 4.02 0.19 0.00 4.07 16 22 N -0.59 -13.24 2.05 -156.67 -0.32 -13.56 16 23 C -0.25 -6.29 9.93 -15.06 -0.15 -6.44 16 24 H 0.06 1.59 7.83 -52.48 -0.41 1.18 16 25 C 0.01 0.36 5.44 -17.43 -0.09 0.27 16 26 N -0.90 -24.87 11.17 55.49 0.62 -24.25 16 27 Si 0.90 20.79 29.56 -169.99 -5.02 15.77 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 C -0.09 -1.08 8.14 -39.19 -0.32 -1.40 16 32 C -0.13 -1.33 9.68 -39.64 -0.38 -1.71 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 35 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.59 7.84 -52.49 -0.41 1.18 16 38 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.09 6.84 -51.93 -0.36 0.74 16 41 H 0.08 0.97 7.04 -51.93 -0.37 0.60 16 42 H 0.07 1.44 7.15 -51.93 -0.37 1.07 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.76 6.39 -51.93 -0.33 0.43 16 46 H 0.06 1.54 7.39 -51.93 -0.38 1.15 16 47 H 0.04 0.88 7.08 -51.93 -0.37 0.52 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.14 1.68 4.60 -52.49 -0.24 1.44 16 50 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -29.39 377.90 -11.24 -40.63 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.64 Total: 3.46 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.07 Total: -6.89 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.29 Total: -48.06 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.39 -11.24 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.406 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds