Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38367 * 119.85385 * 2 1 4 4 C 1.37955 * 120.14603 * 179.97438 * 3 2 1 5 5 C 1.39580 * 119.85277 * 0.02596 * 4 3 2 6 6 C 1.47842 * 120.14300 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00097 * 208.24479 * 6 5 4 8 8 N 1.34776 * 119.99914 * 28.24719 * 6 5 4 9 9 C 1.49664 * 125.94617 * 174.55162 * 8 6 5 10 10 C 1.51621 * 102.70935 * 155.11216 * 9 8 6 11 11 H 1.08988 * 109.78490 * 288.15297 * 10 9 8 12 12 C 1.56047 * 98.77594 * 43.17515 * 10 9 8 13 13 H 1.09001 * 103.81105 * 62.54929 * 12 10 9 14 14 C 1.47977 * 126.13984 * 354.04261 * 8 6 5 15 15 C 1.49054 * 106.71114 * 174.21328 * 12 10 9 16 16 H 1.09000 * 114.24531 * 154.68013 * 15 12 10 17 17 C 1.55078 * 109.13093 * 26.28722 * 15 12 10 18 18 C 1.53970 * 108.38101 * 287.99310 * 17 15 12 19 19 C 1.51857 * 122.48388 * 157.22737 * 10 9 8 20 20 H 1.08997 * 113.91380 * 42.54127 * 19 10 9 21 21 C 1.55233 * 108.66484 * 275.44764 * 19 10 9 22 22 N 1.49025 * 106.62662 * 288.64126 * 21 19 10 23 23 C 1.36938 * 124.15608 * 215.75466 * 22 21 19 24 24 H 1.07991 * 120.00016 * 159.85344 * 23 22 21 25 25 C 1.38815 * 119.99548 * 339.85031 * 23 22 21 26 26 N 1.31616 * 120.00131 * 334.50743 * 25 23 22 27 27 Si 1.86803 * 119.99691 * 154.50460 * 25 23 22 28 28 H 1.48505 * 109.46977 * 269.99792 * 27 25 23 29 29 H 1.48503 * 109.47095 * 150.00234 * 27 25 23 30 30 H 1.48491 * 109.47030 * 29.99906 * 27 25 23 31 31 C 1.39578 * 119.71152 * 0.24484 * 5 4 3 32 32 C 1.37959 * 119.84858 * 359.47815 * 31 5 4 33 33 H 1.08996 * 109.46776 * 90.00187 * 1 2 3 34 34 H 1.09000 * 109.46689 * 210.00314 * 1 2 3 35 35 H 1.09001 * 109.47160 * 330.00507 * 1 2 3 36 36 H 1.07997 * 119.92162 * 359.97105 * 3 2 1 37 37 H 1.07998 * 120.07255 * 180.02562 * 4 3 2 38 38 H 1.09003 * 110.76308 * 36.80602 * 9 8 6 39 39 H 1.09000 * 110.76486 * 273.42076 * 9 8 6 40 40 H 1.09000 * 110.07456 * 55.50787 * 14 8 6 41 41 H 1.08995 * 110.14747 * 293.45927 * 14 8 6 42 42 H 1.09002 * 109.74255 * 168.23324 * 17 15 12 43 43 H 1.08995 * 109.64944 * 47.69755 * 17 15 12 44 44 H 1.08997 * 109.87305 * 275.08238 * 18 17 15 45 45 H 1.08999 * 109.87364 * 154.03567 * 18 17 15 46 46 H 1.09004 * 110.01937 * 169.36671 * 21 19 10 47 47 H 1.08998 * 110.02257 * 47.92641 * 21 19 10 48 48 H 0.97001 * 120.00690 * 0.68907 * 26 25 23 49 49 H 1.07997 * 120.07150 * 179.72574 * 31 5 4 50 50 H 1.08002 * 119.92337 * 180.27361 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2763 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 -0.9272 -0.4976 8 7 6.4285 1.0283 0.5529 9 6 7.9124 1.1129 0.7290 10 6 8.1583 2.6084 0.7732 11 1 8.0193 3.0347 -0.2202 12 6 6.9713 3.0176 1.6999 13 1 7.1854 2.5059 2.6382 14 6 5.8355 2.2763 1.0826 15 6 7.1294 4.4727 1.9816 16 1 6.1994 4.9840 2.2304 17 6 7.9092 5.1343 0.8158 18 6 9.3795 4.6848 0.8984 19 6 9.3897 3.2135 1.4241 20 1 10.3142 2.6808 1.2012 21 6 9.1243 3.3632 2.9462 22 7 8.1354 4.4674 3.1001 23 6 8.1385 5.3636 4.1355 24 1 7.6261 6.3087 4.0331 25 6 8.8004 5.0571 5.3166 26 7 8.9846 3.8001 5.6606 27 14 9.4295 6.4288 6.4176 28 1 10.8167 6.7832 6.0231 29 1 9.4179 5.9736 7.8311 30 1 8.5544 7.6197 6.2737 31 6 3.5754 -1.2070 -0.0052 32 6 2.1958 -1.1999 0.0001 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6522 2.1332 -0.0005 37 1 4.1117 2.1444 0.0010 38 1 8.4284 0.6614 -0.1184 39 1 8.2180 0.6432 1.6638 40 1 5.0811 2.0426 1.8339 41 1 5.3980 2.8579 0.2713 42 1 7.8515 6.2193 0.9032 43 1 7.4820 4.8195 -0.1362 44 1 9.9255 5.3284 1.5881 45 1 9.8363 4.7281 -0.0903 46 1 10.0499 3.6166 3.4632 47 1 8.7139 2.4362 3.3464 48 1 8.6668 3.0878 5.0840 49 1 4.1119 -2.1443 -0.0097 50 1 1.6523 -2.1332 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087408041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = 65.183164 kcal Electronic energy + Delta-G solvation = -30592.391342 eV Core-core repulsion = 26779.564557 eV Total energy + Delta-G solvation = -3812.826785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44215 -39.95164 -38.37807 -36.26089 -33.54818 -33.06786 -31.44462 -31.13261 -30.38556 -29.55576 -28.22520 -27.25600 -25.65164 -23.97048 -22.92142 -22.04490 -21.70271 -21.16250 -20.54056 -19.81278 -17.78500 -17.41038 -17.09959 -16.46332 -15.74079 -15.52068 -15.33657 -14.92086 -14.67690 -14.59996 -14.19060 -13.98903 -13.77664 -13.68518 -13.30549 -13.18773 -12.94326 -12.62036 -12.52302 -12.19344 -12.08726 -11.88442 -11.67823 -11.64856 -11.33231 -11.21024 -11.11802 -10.96997 -10.72827 -10.64617 -10.53057 -10.12938 -9.95264 -9.83103 -9.57167 -9.47166 -9.25360 -9.16443 -8.91858 -8.58243 -8.32868 -6.93090 -6.14045 -3.17289 0.74375 1.18898 2.74283 2.88641 3.47996 3.50041 3.65901 3.66215 4.26499 4.44526 4.54524 4.55975 4.67747 4.75431 4.81805 4.95315 5.03809 5.12234 5.18868 5.27682 5.33635 5.38261 5.43273 5.46215 5.48688 5.57459 5.60749 5.66380 5.73386 5.76969 5.78920 5.81417 5.93963 6.00014 6.06742 6.09123 6.12580 6.15234 6.24731 6.27932 6.31632 6.32052 6.54632 6.55628 6.70691 6.76162 6.81606 6.95257 7.01380 7.06132 7.52131 7.78216 8.13304 8.46768 8.96188 9.78667 10.30837 11.22242 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003037 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.487154 B = 9216.952167 C = 9954.774570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.097 4.097 5 C -0.132 4.132 6 C 0.574 3.426 7 O -0.544 6.544 8 N -0.615 5.615 9 C 0.120 3.880 10 C -0.107 4.107 11 H 0.078 0.922 12 C -0.144 4.144 13 H 0.088 0.912 14 C 0.125 3.875 15 C 0.184 3.816 16 H 0.078 0.922 17 C -0.123 4.123 18 C -0.093 4.093 19 C -0.098 4.098 20 H 0.082 0.918 21 C 0.154 3.846 22 N -0.602 5.602 23 C -0.336 4.336 24 H 0.062 0.938 25 C -0.027 4.027 26 N -0.923 5.923 27 Si 1.073 2.927 28 H -0.294 1.294 29 H -0.290 1.290 30 H -0.293 1.293 31 C -0.061 4.061 32 C -0.130 4.130 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.269 0.731 49 H 0.132 0.868 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 -4.791 -12.892 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.364 3.636 7 O -0.423 6.423 8 N -0.348 5.348 9 C -0.001 4.001 10 C -0.126 4.126 11 H 0.096 0.904 12 C -0.164 4.164 13 H 0.106 0.894 14 C 0.002 3.998 15 C 0.078 3.922 16 H 0.096 0.904 17 C -0.162 4.162 18 C -0.130 4.130 19 C -0.118 4.118 20 H 0.100 0.900 21 C 0.029 3.971 22 N -0.328 5.328 23 C -0.465 4.465 24 H 0.080 0.920 25 C -0.229 4.229 26 N -0.564 5.564 27 Si 0.903 3.097 28 H -0.222 1.222 29 H -0.217 1.217 30 H -0.220 1.220 31 C -0.079 4.079 32 C -0.148 4.148 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.150 0.850 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.997 -4.956 -11.645 16.766 hybrid contribution -0.863 -0.348 -1.348 1.638 sum -11.860 -5.303 -12.993 18.374 Atomic orbital electron populations 1.20854 0.90957 1.03094 1.02518 1.20154 0.96307 0.93236 0.97043 1.21027 0.93898 0.97804 1.01876 1.22035 0.94700 0.98334 0.96429 1.19879 0.92663 0.94606 1.06311 1.17966 0.86855 0.81093 0.77688 1.90759 1.69922 1.35567 1.46065 1.49302 1.08241 1.17646 1.59641 1.21834 0.79269 0.97079 1.01925 1.22155 0.97324 0.93301 0.99820 0.90370 1.21827 0.93995 0.99487 1.01091 0.89416 1.21064 0.96410 0.84719 0.97570 1.20618 0.92641 0.89835 0.89123 0.90438 1.22603 0.96021 1.00085 0.97521 1.22099 0.96636 0.95547 0.98764 1.22327 0.95605 0.95772 0.98085 0.90005 1.21699 0.93621 0.91000 0.90793 1.45944 1.26473 1.34642 1.25711 1.19870 1.36756 0.96187 0.93665 0.91996 1.25802 1.00304 1.01084 0.95726 1.70792 1.49496 0.99201 1.36946 0.83359 0.76207 0.74177 0.75909 1.22161 1.21689 1.21963 1.21203 0.93906 0.97406 0.95431 1.20989 0.93742 0.97804 1.02310 0.90890 0.91335 0.91226 0.85423 0.83876 0.90336 0.90906 0.90725 0.91278 0.92576 0.93665 0.90966 0.93961 0.91623 0.95956 0.91918 0.85037 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.07 -0.63 5.89 -104.53 -0.62 -1.24 16 3 C -0.13 -1.26 9.68 -39.64 -0.38 -1.64 16 4 C -0.10 -1.11 8.36 -39.18 -0.33 -1.44 16 5 C -0.13 -1.78 5.75 -104.97 -0.60 -2.39 16 6 C 0.57 9.21 7.65 -12.33 -0.09 9.12 16 7 O -0.54 -10.29 16.97 5.32 0.09 -10.20 16 8 N -0.61 -9.30 3.40 -174.10 -0.59 -9.89 16 9 C 0.12 1.83 6.66 -2.98 -0.02 1.81 16 10 C -0.11 -1.63 2.25 -90.27 -0.20 -1.83 16 11 H 0.08 1.15 6.33 -51.94 -0.33 0.82 16 12 C -0.14 -2.35 2.31 -92.88 -0.21 -2.57 16 13 H 0.09 1.74 5.21 -51.93 -0.27 1.46 16 14 C 0.12 1.72 4.86 -5.19 -0.03 1.69 16 15 C 0.18 3.38 4.49 -66.56 -0.30 3.08 16 16 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 17 C -0.12 -2.00 5.60 -25.13 -0.14 -2.14 16 18 C -0.09 -1.55 5.48 -24.49 -0.13 -1.68 16 19 C -0.10 -1.65 4.25 -88.28 -0.38 -2.02 16 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 21 C 0.15 3.30 3.69 -1.46 -0.01 3.30 16 22 N -0.60 -13.73 2.09 -160.12 -0.33 -14.06 16 23 C -0.34 -8.87 9.99 -15.06 -0.15 -9.02 16 24 H 0.06 1.65 7.95 -52.49 -0.42 1.23 16 25 C -0.03 -0.75 4.95 -17.43 -0.09 -0.84 16 26 N -0.92 -26.96 12.85 55.49 0.71 -26.24 16 27 Si 1.07 24.81 29.99 -169.99 -5.10 19.72 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 31 C -0.06 -0.74 9.60 -39.18 -0.38 -1.12 16 32 C -0.13 -1.30 9.68 -39.64 -0.38 -1.68 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.51 4.19 -52.49 -0.22 1.29 16 38 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 41 H 0.07 0.82 6.18 -51.93 -0.32 0.49 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.64 6.92 -51.93 -0.36 0.28 16 44 H 0.07 1.40 7.76 -51.93 -0.40 0.99 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.60 7.28 -51.93 -0.38 1.23 16 47 H 0.02 0.52 5.77 -51.93 -0.30 0.22 16 48 H 0.27 7.81 5.78 -40.82 -0.24 7.57 16 49 H 0.13 1.58 7.89 -52.49 -0.41 1.16 16 50 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -31.24 375.68 -11.11 -42.35 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.47 Total: 3.68 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -4.08 Total: -11.01 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.21 Total: -50.20 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.24 -11.11 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.529 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds