Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38367 * 119.85385 * 2 1 4 4 C 1.37955 * 120.14603 * 179.97438 * 3 2 1 5 5 C 1.39580 * 119.85277 * 0.02596 * 4 3 2 6 6 C 1.47842 * 120.14300 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00097 * 208.24479 * 6 5 4 8 8 N 1.34776 * 119.99914 * 28.24719 * 6 5 4 9 9 C 1.49664 * 125.94617 * 174.55162 * 8 6 5 10 10 C 1.51621 * 102.70935 * 155.11216 * 9 8 6 11 11 H 1.08988 * 109.78490 * 288.15297 * 10 9 8 12 12 C 1.56047 * 98.77594 * 43.17515 * 10 9 8 13 13 H 1.09001 * 103.81105 * 62.54929 * 12 10 9 14 14 C 1.47977 * 126.13984 * 354.04261 * 8 6 5 15 15 C 1.49054 * 106.71114 * 174.21328 * 12 10 9 16 16 H 1.09000 * 114.24531 * 154.68013 * 15 12 10 17 17 C 1.55078 * 109.13093 * 26.28722 * 15 12 10 18 18 C 1.53970 * 108.38101 * 287.99310 * 17 15 12 19 19 C 1.51857 * 122.48388 * 157.22737 * 10 9 8 20 20 H 1.08997 * 113.91380 * 42.54127 * 19 10 9 21 21 C 1.55233 * 108.66484 * 275.44764 * 19 10 9 22 22 N 1.49025 * 106.62662 * 288.64126 * 21 19 10 23 23 C 1.36938 * 124.15608 * 215.75466 * 22 21 19 24 24 H 1.07991 * 120.00016 * 159.85344 * 23 22 21 25 25 C 1.38815 * 119.99548 * 339.85031 * 23 22 21 26 26 N 1.31616 * 120.00131 * 334.50743 * 25 23 22 27 27 Si 1.86803 * 119.99691 * 154.50460 * 25 23 22 28 28 H 1.48505 * 109.46977 * 269.99792 * 27 25 23 29 29 H 1.48503 * 109.47095 * 150.00234 * 27 25 23 30 30 H 1.48491 * 109.47030 * 29.99906 * 27 25 23 31 31 C 1.39578 * 119.71152 * 0.24484 * 5 4 3 32 32 C 1.37959 * 119.84858 * 359.47815 * 31 5 4 33 33 H 1.08996 * 109.46776 * 90.00187 * 1 2 3 34 34 H 1.09000 * 109.46689 * 210.00314 * 1 2 3 35 35 H 1.09001 * 109.47160 * 330.00507 * 1 2 3 36 36 H 1.07997 * 119.92162 * 359.97105 * 3 2 1 37 37 H 1.07998 * 120.07255 * 180.02562 * 4 3 2 38 38 H 1.09003 * 110.76308 * 36.80602 * 9 8 6 39 39 H 1.09000 * 110.76486 * 273.42076 * 9 8 6 40 40 H 1.09000 * 110.07456 * 55.50787 * 14 8 6 41 41 H 1.08995 * 110.14747 * 293.45927 * 14 8 6 42 42 H 1.09002 * 109.74255 * 168.23324 * 17 15 12 43 43 H 1.08995 * 109.64944 * 47.69755 * 17 15 12 44 44 H 1.08997 * 109.87305 * 275.08238 * 18 17 15 45 45 H 1.08999 * 109.87364 * 154.03567 * 18 17 15 46 46 H 1.09004 * 110.01937 * 169.36671 * 21 19 10 47 47 H 1.08998 * 110.02257 * 47.92641 * 21 19 10 48 48 H 0.97001 * 120.00690 * 0.68907 * 26 25 23 49 49 H 1.07997 * 120.07150 * 179.72574 * 31 5 4 50 50 H 1.08002 * 119.92337 * 180.27361 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2763 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 -0.9272 -0.4976 8 7 6.4285 1.0283 0.5529 9 6 7.9124 1.1129 0.7290 10 6 8.1583 2.6084 0.7732 11 1 8.0193 3.0347 -0.2202 12 6 6.9713 3.0176 1.6999 13 1 7.1854 2.5059 2.6382 14 6 5.8355 2.2763 1.0826 15 6 7.1294 4.4727 1.9816 16 1 6.1994 4.9840 2.2304 17 6 7.9092 5.1343 0.8158 18 6 9.3795 4.6848 0.8984 19 6 9.3897 3.2135 1.4241 20 1 10.3142 2.6808 1.2012 21 6 9.1243 3.3632 2.9462 22 7 8.1354 4.4674 3.1001 23 6 8.1385 5.3636 4.1355 24 1 7.6261 6.3087 4.0331 25 6 8.8004 5.0571 5.3166 26 7 8.9846 3.8001 5.6606 27 14 9.4295 6.4288 6.4176 28 1 10.8167 6.7832 6.0231 29 1 9.4179 5.9736 7.8311 30 1 8.5544 7.6197 6.2737 31 6 3.5754 -1.2070 -0.0052 32 6 2.1958 -1.1999 0.0001 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6522 2.1332 -0.0005 37 1 4.1117 2.1444 0.0010 38 1 8.4284 0.6614 -0.1184 39 1 8.2180 0.6432 1.6638 40 1 5.0811 2.0426 1.8339 41 1 5.3980 2.8579 0.2713 42 1 7.8515 6.2193 0.9032 43 1 7.4820 4.8195 -0.1362 44 1 9.9255 5.3284 1.5881 45 1 9.8363 4.7281 -0.0903 46 1 10.0499 3.6166 3.4632 47 1 8.7139 2.4362 3.3464 48 1 8.6668 3.0878 5.0840 49 1 4.1119 -2.1443 -0.0097 50 1 1.6523 -2.1332 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087408041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = 49.276839 kcal Electronic energy + Delta-G solvation = -30593.081092 eV Core-core repulsion = 26779.564557 eV Total energy + Delta-G solvation = -3813.516535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.80696 -41.03067 -39.42114 -37.65832 -35.31059 -33.97959 -32.79136 -32.14540 -31.58643 -31.29404 -29.48466 -28.15614 -27.32962 -25.33546 -23.78493 -23.42584 -23.06577 -22.53284 -21.84374 -20.90634 -19.60112 -18.62795 -18.45816 -17.76918 -16.83157 -16.69834 -16.56513 -16.26841 -16.07895 -15.67491 -15.59763 -15.16945 -14.86009 -14.67720 -14.65632 -14.46794 -14.24128 -13.89059 -13.61476 -13.26586 -13.13912 -13.02921 -12.93024 -12.75567 -12.70750 -12.61675 -12.52735 -12.41339 -12.21971 -12.10654 -11.89289 -11.78896 -11.66750 -11.23840 -11.05861 -10.96992 -10.76645 -10.30043 -9.99993 -9.90449 -9.63199 -8.86591 -8.26326 -5.25751 -0.14647 0.38452 1.57793 1.59652 1.65587 1.75126 1.81739 2.62804 2.77636 3.04650 3.23612 3.26698 3.45248 3.59803 3.78765 3.80855 3.94493 3.97029 4.00642 4.13893 4.20729 4.28316 4.31795 4.33963 4.38707 4.43696 4.49557 4.58478 4.65728 4.68397 4.73346 4.74400 4.82018 4.86290 4.86903 4.91096 4.95791 5.04825 5.07251 5.12689 5.22946 5.23582 5.31953 5.33738 5.37628 5.44438 5.52521 5.58015 5.60887 5.80081 5.93832 6.32029 6.39498 6.91851 6.94795 7.76481 8.33861 9.09063 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003037 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.487154 B = 9216.952167 C = 9954.774570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.159 4.159 6 C 0.572 3.428 7 O -0.583 6.583 8 N -0.615 5.615 9 C 0.120 3.880 10 C -0.092 4.092 11 H 0.103 0.897 12 C -0.130 4.130 13 H 0.045 0.955 14 C 0.133 3.867 15 C 0.180 3.820 16 H 0.078 0.922 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.088 4.088 20 H 0.099 0.901 21 C 0.164 3.836 22 N -0.620 5.620 23 C -0.331 4.331 24 H 0.059 0.941 25 C -0.085 4.085 26 N -0.959 5.959 27 Si 1.118 2.882 28 H -0.288 1.288 29 H -0.300 1.300 30 H -0.271 1.271 31 C -0.077 4.077 32 C -0.132 4.132 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.024 0.976 47 H -0.002 1.002 48 H 0.255 0.745 49 H 0.122 0.878 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.543 -3.486 -15.411 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.148 4.148 4 C -0.117 4.117 5 C -0.162 4.162 6 C 0.363 3.637 7 O -0.465 6.465 8 N -0.347 5.347 9 C -0.001 4.001 10 C -0.110 4.110 11 H 0.121 0.879 12 C -0.150 4.150 13 H 0.064 0.936 14 C 0.011 3.989 15 C 0.075 3.925 16 H 0.096 0.904 17 C -0.153 4.153 18 C -0.127 4.127 19 C -0.108 4.108 20 H 0.117 0.883 21 C 0.039 3.961 22 N -0.346 5.346 23 C -0.460 4.460 24 H 0.077 0.923 25 C -0.280 4.280 26 N -0.603 5.603 27 Si 0.944 3.056 28 H -0.215 1.215 29 H -0.227 1.227 30 H -0.196 1.196 31 C -0.096 4.096 32 C -0.149 4.149 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.015 0.985 48 H 0.066 0.934 49 H 0.140 0.860 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.494 -3.621 -14.199 19.920 hybrid contribution -0.204 -0.786 -0.580 0.998 sum -13.697 -4.407 -14.779 20.627 Atomic orbital electron populations 1.20932 0.88549 1.04181 1.03655 1.20582 0.98065 0.92728 0.94948 1.21383 0.93316 0.99234 1.00869 1.22126 0.95563 0.97672 0.96311 1.19816 0.91091 0.96082 1.09191 1.18436 0.88002 0.80399 0.76855 1.90724 1.70943 1.36882 1.47932 1.49315 1.08036 1.18061 1.59324 1.21770 0.79926 0.97074 1.01363 1.22031 0.95634 0.93100 1.00280 0.87864 1.21569 0.95980 0.97863 0.99620 0.93626 1.21069 0.95155 0.84066 0.98596 1.20835 0.92100 0.91226 0.88327 0.90367 1.22507 0.95266 0.99741 0.97824 1.22067 0.96951 0.94086 0.99636 1.22255 0.97306 0.96995 0.94261 0.88294 1.21473 0.91339 0.89496 0.93803 1.46164 1.28453 1.34194 1.25826 1.20117 1.35116 0.96535 0.94231 0.92272 1.27022 1.01205 1.02016 0.97752 1.70898 1.51978 0.99846 1.37587 0.82759 0.76328 0.72672 0.73830 1.21545 1.22658 1.19562 1.21294 0.95109 0.96803 0.96369 1.21274 0.92803 0.99389 1.01482 0.89545 0.90353 0.90139 0.82759 0.83055 0.89682 0.92694 0.90603 0.87835 0.92758 0.90004 0.94255 0.90503 0.95740 0.98467 0.93385 0.85993 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.01 71.24 0.71 -0.33 16 2 C -0.06 -0.98 5.89 -19.80 -0.12 -1.09 16 3 C -0.13 -2.14 9.68 22.23 0.22 -1.92 16 4 C -0.10 -2.04 8.36 22.53 0.19 -1.85 16 5 C -0.16 -4.19 5.75 -20.09 -0.12 -4.30 16 6 C 0.57 18.28 7.65 86.79 0.66 18.95 16 7 O -0.58 -22.50 16.97 -3.87 -0.07 -22.56 16 8 N -0.61 -18.15 3.40 -823.00 -2.80 -20.95 16 9 C 0.12 3.63 6.66 85.31 0.57 4.20 16 10 C -0.09 -2.64 2.25 -10.57 -0.02 -2.66 16 11 H 0.10 2.57 6.33 -2.39 -0.02 2.56 16 12 C -0.13 -4.15 2.31 -12.26 -0.03 -4.18 16 13 H 0.05 1.87 5.21 -2.39 -0.01 1.86 16 14 C 0.13 3.43 4.86 84.83 0.41 3.84 16 15 C 0.18 6.40 4.49 43.68 0.20 6.59 16 16 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 17 C -0.11 -3.38 5.60 31.63 0.18 -3.20 16 18 C -0.09 -2.81 5.48 32.05 0.18 -2.64 16 19 C -0.09 -2.92 4.25 -9.28 -0.04 -2.96 16 20 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 21 C 0.16 7.40 3.69 86.66 0.32 7.72 16 22 N -0.62 -28.98 2.09 -660.49 -1.38 -30.36 16 23 C -0.33 -17.83 9.99 84.03 0.84 -17.00 16 24 H 0.06 3.17 7.95 -2.92 -0.02 3.14 16 25 C -0.08 -4.79 4.95 84.86 0.42 -4.37 16 26 N -0.96 -58.93 12.85 21.65 0.28 -58.66 16 27 Si 1.12 51.23 29.99 68.60 2.06 53.29 16 28 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 30 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 31 C -0.08 -1.84 9.60 22.53 0.22 -1.63 16 32 C -0.13 -2.35 9.68 22.23 0.22 -2.14 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 35 H 0.08 0.58 8.08 -2.39 -0.02 0.57 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.15 2.71 4.19 -2.91 -0.01 2.70 16 38 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 1.98 7.48 -2.39 -0.02 1.96 16 41 H 0.10 2.03 6.18 -2.39 -0.01 2.02 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 1.89 6.92 -2.39 -0.02 1.87 16 44 H 0.04 1.50 7.76 -2.39 -0.02 1.48 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.02 1.27 7.28 -2.38 -0.02 1.26 16 47 H 0.00 -0.11 5.77 -2.39 -0.01 -0.13 16 48 H 0.26 15.87 5.78 -92.71 -0.54 15.33 16 49 H 0.12 3.04 7.89 -2.91 -0.02 3.02 16 50 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.71 375.68 4.27 -68.44 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.18 Total: 19.77 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.00 Total: -8.97 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.90 Total: -109.97 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.56 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.06 Total: 53.29 kcal Total: -72.71 4.27 -68.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.716 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds