Wall clock time and date at job start Sat Apr 11 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.85726 * 2 1 4 4 C 1.37956 * 120.14795 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85158 * 0.02684 * 4 3 2 6 6 C 1.47851 * 120.14699 * 179.97438 * 5 4 3 7 7 O 1.21547 * 119.99673 * 338.65389 * 6 5 4 8 8 N 1.34779 * 119.99995 * 158.64669 * 6 5 4 9 9 C 1.48154 * 127.83691 * 353.88782 * 8 6 5 10 10 C 1.54401 * 104.57627 * 219.61149 * 9 8 6 11 11 H 1.09000 * 110.82718 * 216.31336 * 10 9 8 12 12 C 1.54148 * 104.98854 * 336.01894 * 10 9 8 13 13 H 1.09002 * 111.51522 * 239.88877 * 12 10 9 14 14 C 1.48147 * 127.83149 * 173.90615 * 8 6 5 15 15 C 1.53317 * 109.35236 * 116.84856 * 12 10 9 16 16 H 1.09002 * 110.53161 * 181.65486 * 15 12 10 17 17 C 1.53272 * 108.60700 * 60.24362 * 15 12 10 18 18 C 1.52912 * 109.64617 * 298.25570 * 17 15 12 19 19 C 1.53018 * 110.00060 * 1.48065 * 18 17 15 20 20 H 1.08995 * 109.64740 * 178.96541 * 19 18 17 21 21 C 1.53634 * 109.00363 * 299.63601 * 19 18 17 22 22 N 1.47585 * 106.70002 * 59.32374 * 21 19 18 23 23 C 1.36941 * 122.01017 * 180.32282 * 22 21 19 24 24 H 1.08001 * 119.99744 * 179.97438 * 23 22 21 25 25 C 1.38812 * 120.00021 * 0.02562 * 23 22 21 26 26 N 1.31624 * 119.99926 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00158 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47189 * 59.99727 * 27 25 23 29 29 H 1.48495 * 109.47283 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47099 * 300.00267 * 27 25 23 31 31 C 1.39578 * 119.71115 * 0.24917 * 5 4 3 32 32 C 1.37956 * 119.85102 * 359.46904 * 31 5 4 33 33 H 1.09006 * 109.46834 * 89.99746 * 1 2 3 34 34 H 1.08992 * 109.47393 * 209.99794 * 1 2 3 35 35 H 1.09005 * 109.47138 * 330.00643 * 1 2 3 36 36 H 1.08001 * 119.93049 * 0.02562 * 3 2 1 37 37 H 1.08000 * 120.07825 * 179.97438 * 4 3 2 38 38 H 1.08999 * 110.41237 * 338.38384 * 9 8 6 39 39 H 1.08997 * 110.41131 * 100.71382 * 9 8 6 40 40 H 1.08993 * 110.40586 * 21.69905 * 14 8 6 41 41 H 1.09005 * 110.40343 * 259.26498 * 14 8 6 42 42 H 1.09000 * 109.44461 * 178.20129 * 17 15 12 43 43 H 1.09002 * 109.41262 * 58.29331 * 17 15 12 44 44 H 1.09003 * 109.38349 * 121.63598 * 18 17 15 45 45 H 1.08990 * 109.38502 * 241.31699 * 18 17 15 46 46 H 1.08999 * 110.00987 * 178.62287 * 21 19 18 47 47 H 1.09003 * 110.00781 * 299.93354 * 21 19 18 48 48 H 0.96999 * 119.99500 * 179.97438 * 26 25 23 49 49 H 1.08006 * 120.07348 * 179.72693 * 31 5 4 50 50 H 1.08001 * 119.93182 * 180.27397 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 -0.0002 0.0005 7 8 6.3625 0.9802 -0.3826 8 7 6.4285 -1.0874 0.4255 9 6 5.8753 -2.3168 1.0399 10 6 6.8807 -2.6809 2.1537 11 1 6.9895 -3.7621 2.2393 12 6 8.2088 -2.0291 1.7206 13 1 8.9956 -2.7724 1.5919 14 6 7.8904 -1.3238 0.3845 15 6 8.6172 -0.9730 2.7541 16 1 9.5404 -0.4787 2.4514 17 6 8.7963 -1.6610 4.1119 18 6 7.4696 -2.2800 4.5536 19 6 6.4010 -2.0460 3.4836 20 1 5.4631 -2.5051 3.7959 21 6 6.2113 -0.5340 3.2883 22 7 7.5209 0.0080 2.8766 23 6 7.7077 1.3408 2.6235 24 1 8.6805 1.7025 2.3245 25 6 6.6471 2.2271 2.7521 26 7 5.4618 1.7864 3.1170 27 14 6.9021 4.0452 2.4075 28 1 7.3513 4.2247 1.0035 29 1 5.6240 4.7723 2.6146 30 1 7.9338 4.5839 3.3299 31 6 3.5752 -1.2071 -0.0053 32 6 2.1957 -1.2000 0.0001 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3634 0.8901 0.5138 36 1 1.6523 2.1332 0.0004 37 1 4.1119 2.1442 0.0001 38 1 4.8914 -2.1195 1.4655 39 1 5.8160 -3.1169 0.3021 40 1 8.4267 -0.3774 0.3171 41 1 8.1477 -1.9683 -0.4562 42 1 9.1181 -0.9273 4.8509 43 1 9.5505 -2.4432 4.0251 44 1 7.6025 -3.3514 4.7038 45 1 7.1506 -1.8219 5.4897 46 1 5.4700 -0.3484 2.5111 47 1 5.8933 -0.0740 4.2239 48 1 4.7208 2.4058 3.2073 49 1 4.1117 -2.1445 -0.0098 50 1 1.6520 -2.1332 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087408042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:58 Heat of formation + Delta-G solvation = 42.600985 kcal Electronic energy + Delta-G solvation = -32740.766059 eV Core-core repulsion = 28926.960037 eV Total energy + Delta-G solvation = -3813.806022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60436 -39.10637 -37.45095 -35.25165 -33.14028 -32.66593 -31.46609 -30.70647 -29.90163 -29.57991 -27.33642 -26.74394 -25.13996 -23.93885 -22.33502 -21.79897 -21.52628 -20.77435 -20.36695 -19.20962 -17.23217 -16.81262 -16.01993 -15.80463 -15.33642 -15.10889 -14.93237 -14.51399 -14.30596 -13.95955 -13.73551 -13.66991 -13.19771 -13.12360 -12.73459 -12.58633 -12.19344 -12.11855 -12.04871 -11.83362 -11.75573 -11.53114 -11.38277 -11.30834 -11.11426 -10.93432 -10.79115 -10.62658 -10.55393 -10.44548 -10.36441 -10.04884 -9.61853 -9.57002 -9.18371 -9.16959 -8.97893 -8.56563 -8.30688 -8.23089 -7.79670 -6.61974 -5.43524 -2.77549 1.38900 1.77685 3.52240 3.57571 3.59018 3.65970 3.72220 4.44496 4.70633 4.94157 4.99125 5.06686 5.09121 5.23677 5.29823 5.36027 5.48932 5.54169 5.63131 5.69145 5.72421 5.75580 5.77121 5.82760 5.83334 5.87937 5.89889 5.99163 6.02122 6.06840 6.12104 6.26565 6.34105 6.37290 6.37452 6.45269 6.50967 6.57511 6.67049 6.69232 6.78210 6.79982 6.85607 6.87410 6.97756 7.07014 7.20452 7.32066 7.81977 7.84968 8.08755 8.41371 8.52385 9.12011 9.48011 10.09598 10.61574 11.61073 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.006294 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.665770 B = 4447.535726 C = 5784.514202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.130 4.130 4 C -0.038 4.038 5 C -0.105 4.105 6 C 0.597 3.403 7 O -0.521 6.521 8 N -0.596 5.596 9 C 0.098 3.902 10 C -0.085 4.085 11 H 0.071 0.929 12 C -0.115 4.115 13 H 0.072 0.928 14 C 0.128 3.872 15 C 0.178 3.822 16 H 0.063 0.937 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.113 4.113 20 H 0.059 0.941 21 C 0.203 3.797 22 N -0.588 5.588 23 C -0.219 4.219 24 H 0.065 0.935 25 C 0.008 3.992 26 N -0.918 5.918 27 Si 0.895 3.105 28 H -0.284 1.284 29 H -0.294 1.294 30 H -0.293 1.293 31 C -0.102 4.102 32 C -0.135 4.135 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.245 0.755 49 H 0.132 0.868 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -11.930 -4.139 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.057 4.057 5 C -0.108 4.108 6 C 0.387 3.613 7 O -0.397 6.397 8 N -0.329 5.329 9 C -0.025 4.025 10 C -0.104 4.104 11 H 0.090 0.910 12 C -0.137 4.137 13 H 0.090 0.910 14 C 0.005 3.995 15 C 0.069 3.931 16 H 0.082 0.918 17 C -0.168 4.168 18 C -0.137 4.137 19 C -0.132 4.132 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.311 5.311 23 C -0.348 4.348 24 H 0.083 0.917 25 C -0.187 4.187 26 N -0.566 5.566 27 Si 0.727 3.273 28 H -0.211 1.211 29 H -0.221 1.221 30 H -0.220 1.220 31 C -0.121 4.121 32 C -0.153 4.153 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.150 0.850 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.829 -11.104 -4.380 12.876 hybrid contribution 0.108 0.936 0.109 0.948 sum -4.721 -10.168 -4.271 11.997 Atomic orbital electron populations 1.20786 0.91557 1.02651 1.01925 1.19973 0.95754 0.93307 0.98624 1.20925 0.93968 0.97408 1.02524 1.21162 0.93454 0.97916 0.93172 1.19903 0.93429 0.93924 1.03563 1.17412 0.86063 0.80843 0.76976 1.90741 1.69490 1.31389 1.48083 1.48264 1.07412 1.16103 1.61154 1.22678 0.98768 0.86651 0.94414 1.22365 0.94709 0.98075 0.95257 0.91030 1.22777 0.96453 0.97993 0.96450 0.90964 1.22051 0.81877 1.00343 0.95271 1.20537 0.92077 0.89230 0.91212 0.91835 1.22025 0.96155 0.98825 0.99748 1.21315 0.95837 0.98274 0.98253 1.22250 0.96794 1.00999 0.93174 0.92229 1.21158 0.87253 0.84017 0.99657 1.44374 1.04749 1.02651 1.79303 1.18974 0.95208 0.82348 1.38295 0.91720 1.24497 0.95700 0.96997 1.01523 1.69992 1.00130 1.32089 1.54421 0.86446 0.76268 0.86454 0.78181 1.21085 1.22066 1.21994 1.21707 0.94392 0.97773 0.98198 1.20829 0.93879 0.97245 1.03359 0.91445 0.91691 0.91622 0.86143 0.85315 0.89678 0.92467 0.89642 0.93366 0.92490 0.93680 0.93943 0.92873 0.92385 0.93851 0.94446 0.85012 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.08 -1.08 5.89 -104.53 -0.62 -1.70 16 3 C -0.13 -2.11 9.68 -39.64 -0.38 -2.50 16 4 C -0.04 -0.75 9.59 -39.19 -0.38 -1.13 16 5 C -0.11 -2.08 5.52 -104.97 -0.58 -2.66 16 6 C 0.60 13.23 6.67 -12.33 -0.08 13.15 16 7 O -0.52 -13.66 16.80 5.32 0.09 -13.57 16 8 N -0.60 -11.43 1.98 -170.40 -0.34 -11.76 16 9 C 0.10 1.53 3.83 -2.40 -0.01 1.52 16 10 C -0.08 -1.31 3.25 -88.24 -0.29 -1.59 16 11 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.12 -1.88 3.20 -89.12 -0.29 -2.17 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 14 C 0.13 2.30 6.18 -2.40 -0.01 2.28 16 15 C 0.18 3.45 2.86 -67.01 -0.19 3.26 16 16 H 0.06 1.26 7.99 -51.93 -0.41 0.85 16 17 C -0.13 -2.21 5.84 -26.64 -0.16 -2.36 16 18 C -0.10 -1.65 5.64 -26.77 -0.15 -1.81 16 19 C -0.11 -2.01 2.76 -89.23 -0.25 -2.26 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.20 4.67 3.65 -3.12 -0.01 4.66 16 22 N -0.59 -13.83 2.04 -163.21 -0.33 -14.16 16 23 C -0.22 -5.98 9.98 -15.06 -0.15 -6.13 16 24 H 0.06 1.80 7.79 -52.49 -0.41 1.39 16 25 C 0.01 0.24 5.47 -17.43 -0.10 0.14 16 26 N -0.92 -25.87 9.76 55.49 0.54 -25.33 16 27 Si 0.89 23.47 29.55 -169.99 -5.02 18.45 16 28 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 29 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 30 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 31 C -0.10 -1.64 7.99 -39.18 -0.31 -1.95 16 32 C -0.14 -1.89 9.68 -39.64 -0.38 -2.27 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.83 7.80 -52.49 -0.41 2.42 16 38 H 0.09 1.38 4.89 -51.93 -0.25 1.13 16 39 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 40 H 0.09 1.83 7.52 -51.93 -0.39 1.44 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.44 4.24 -51.93 -0.22 1.22 16 47 H 0.04 1.17 7.20 -51.93 -0.37 0.79 16 48 H 0.24 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.13 1.85 4.81 -52.48 -0.25 1.59 16 50 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -31.66 373.12 -11.17 -42.83 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.76 Total: 2.25 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.97 Total: -4.32 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.13 Total: -51.26 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.66 -11.17 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.427 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds