Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.85263 * 2 1 4 4 C 1.37957 * 120.14628 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85200 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14788 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00214 * 214.26179 * 6 5 4 8 8 N 1.34777 * 119.99483 * 34.25415 * 6 5 4 9 9 C 1.48165 * 127.83944 * 356.38958 * 8 6 5 10 10 C 1.54587 * 104.84503 * 139.84195 * 9 8 6 11 11 H 1.09000 * 111.93988 * 263.70397 * 10 9 8 12 12 C 1.55261 * 104.36659 * 24.66452 * 10 9 8 13 13 H 1.08995 * 111.05859 * 239.13074 * 12 10 9 14 14 C 1.48138 * 127.83583 * 176.34462 * 8 6 5 15 15 C 1.53033 * 109.85928 * 116.16686 * 12 10 9 16 16 H 1.09000 * 109.63569 * 180.26146 * 15 12 10 17 17 C 1.53041 * 109.21646 * 300.40692 * 15 12 10 18 18 C 1.52931 * 110.01344 * 59.32181 * 17 15 12 19 19 C 1.53231 * 108.89990 * 140.76102 * 10 9 8 20 20 H 1.08998 * 110.49568 * 68.61850 * 19 10 9 21 21 N 1.47696 * 108.05115 * 189.62110 * 19 10 9 22 22 C 1.36933 * 122.06947 * 239.28585 * 21 19 10 23 23 H 1.08006 * 120.00121 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00551 * 180.27733 * 22 21 19 25 25 N 1.31627 * 119.99339 * 359.72369 * 24 22 21 26 26 Si 1.86792 * 120.00482 * 179.72648 * 24 22 21 27 27 H 1.48507 * 109.47274 * 90.00055 * 26 24 22 28 28 H 1.48502 * 109.47306 * 209.99651 * 26 24 22 29 29 H 1.48491 * 109.47442 * 330.00200 * 26 24 22 30 30 C 1.47639 * 115.86225 * 59.56269 * 21 19 10 31 31 C 1.39575 * 119.71301 * 0.25276 * 5 4 3 32 32 C 1.37957 * 119.85095 * 359.47136 * 31 5 4 33 33 H 1.08996 * 109.46898 * 90.00651 * 1 2 3 34 34 H 1.08999 * 109.46700 * 210.00478 * 1 2 3 35 35 H 1.08998 * 109.46972 * 330.00592 * 1 2 3 36 36 H 1.07994 * 119.92594 * 359.96745 * 3 2 1 37 37 H 1.08002 * 120.07448 * 179.97438 * 4 3 2 38 38 H 1.08995 * 110.42383 * 259.03515 * 9 8 6 39 39 H 1.09001 * 110.41922 * 21.39108 * 9 8 6 40 40 H 1.08997 * 110.40319 * 100.64633 * 14 8 6 41 41 H 1.09002 * 110.49598 * 338.29232 * 14 8 6 42 42 H 1.08998 * 109.38204 * 299.15291 * 17 15 12 43 43 H 1.08999 * 109.37686 * 179.49015 * 17 15 12 44 44 H 1.09003 * 109.45049 * 240.65639 * 18 17 15 45 45 H 1.09003 * 109.45362 * 120.73164 * 18 17 15 46 46 H 0.97003 * 119.99753 * 179.97438 * 25 24 22 47 47 H 1.08999 * 109.99631 * 119.21300 * 30 21 19 48 48 H 1.09002 * 109.98962 * 240.59230 * 30 21 19 49 49 H 1.08000 * 120.07986 * 179.73060 * 31 5 4 50 50 H 1.07997 * 119.92838 * 180.27895 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 -0.8699 -0.5921 8 7 6.4285 0.9648 0.6575 9 6 5.8716 2.1395 1.3683 10 6 6.7266 2.2691 2.6497 11 1 6.2510 1.7919 3.5066 12 6 8.0721 1.5853 2.2858 13 1 8.2823 0.7526 2.9569 14 6 7.8940 1.0908 0.8336 15 6 9.2048 2.6137 2.3235 16 1 10.1467 2.1309 2.0630 17 6 8.9048 3.7304 1.3209 18 6 7.5778 4.4053 1.6707 19 6 6.9851 3.7540 2.9258 20 1 6.0614 4.2548 3.2158 21 7 7.9873 3.8508 4.0064 22 6 7.7232 4.4912 5.1876 23 1 6.7569 4.9450 5.3516 24 6 8.6990 4.5616 6.1724 25 7 9.8764 4.0081 5.9727 26 14 8.3413 5.4417 7.7807 27 1 7.7767 4.4767 8.7581 28 1 9.5997 6.0151 8.3217 29 1 7.3630 6.5328 7.5409 30 6 9.2935 3.2200 3.7318 31 6 3.5754 -1.2069 -0.0054 32 6 2.1958 -1.2000 -0.0001 33 1 -0.3633 -0.0001 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3633 0.8900 0.5137 36 1 1.6521 2.1332 -0.0005 37 1 4.1117 2.1445 0.0001 38 1 5.9630 3.0347 0.7533 39 1 4.8284 1.9650 1.6320 40 1 8.2998 1.8193 0.1317 41 1 8.3791 0.1240 0.6993 42 1 8.8428 3.3087 0.3177 43 1 9.7057 4.4691 1.3520 44 1 6.8821 4.2908 0.8393 45 1 7.7480 5.4655 1.8578 46 1 10.5585 4.0576 6.6607 47 1 10.0843 3.9693 3.7683 48 1 9.4888 2.4345 4.4618 49 1 4.1118 -2.1443 -0.0098 50 1 1.6523 -2.1332 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087408043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 34.339938 kcal Electronic energy + Delta-G solvation = -30594.875673 eV Core-core repulsion = 26780.711425 eV Total energy + Delta-G solvation = -3814.164248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94356 -39.75076 -38.26208 -35.79650 -33.44834 -32.94978 -31.78501 -31.22567 -30.19213 -29.91381 -28.03187 -27.03127 -25.46957 -24.10152 -22.89638 -22.05133 -21.94280 -20.95095 -20.76544 -19.72472 -17.62477 -17.08073 -16.63485 -16.14387 -15.66792 -15.55101 -15.32927 -14.87311 -14.76323 -14.38133 -14.16322 -14.01146 -13.80070 -13.64028 -13.42581 -12.82331 -12.53554 -12.47352 -12.32122 -12.22382 -12.16365 -12.07738 -11.72061 -11.53730 -11.35463 -11.19717 -11.08310 -10.92323 -10.75065 -10.57430 -10.44282 -10.18170 -9.98779 -9.71761 -9.68374 -9.33018 -9.24031 -9.15106 -8.90143 -8.50834 -8.50306 -6.86789 -5.67314 -3.04396 0.76465 1.17388 2.75786 3.01136 3.38727 3.44191 3.45903 3.63403 4.40038 4.46774 4.56721 4.62777 4.74978 4.87448 4.99729 5.03673 5.11678 5.17929 5.27861 5.32102 5.39067 5.42021 5.45953 5.48122 5.54900 5.57610 5.68382 5.72748 5.76731 5.78245 5.79999 5.99341 6.05614 6.08344 6.11639 6.14292 6.18726 6.21953 6.30888 6.35778 6.46341 6.50229 6.66859 6.69682 6.74933 6.83720 6.91840 6.99129 7.62322 7.64232 7.69761 7.90030 8.18904 8.30922 9.24590 9.85523 10.39481 11.37905 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003109 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.846618 B = 9003.009312 C =10084.844608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.128 4.128 6 C 0.575 3.425 7 O -0.547 6.547 8 N -0.611 5.611 9 C 0.086 3.914 10 C -0.105 4.105 11 H 0.082 0.918 12 C -0.079 4.079 13 H 0.076 0.924 14 C 0.102 3.898 15 C -0.110 4.110 16 H 0.066 0.934 17 C -0.106 4.106 18 C -0.134 4.134 19 C 0.180 3.820 20 H 0.067 0.933 21 N -0.599 5.599 22 C -0.235 4.235 23 H 0.075 0.925 24 C -0.008 4.008 25 N -0.922 5.922 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.203 3.797 31 C -0.062 4.062 32 C -0.129 4.129 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.131 0.869 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -5.541 -13.025 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.131 4.131 6 C 0.365 3.635 7 O -0.426 6.426 8 N -0.343 5.343 9 C -0.036 4.036 10 C -0.126 4.126 11 H 0.101 0.899 12 C -0.099 4.099 13 H 0.094 0.906 14 C -0.020 4.020 15 C -0.130 4.130 16 H 0.084 0.916 17 C -0.143 4.143 18 C -0.173 4.173 19 C 0.071 3.929 20 H 0.085 0.915 21 N -0.323 5.323 22 C -0.364 4.364 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.079 3.921 31 C -0.081 4.081 32 C -0.147 4.147 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.149 0.851 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.497 -6.042 -13.221 19.836 hybrid contribution -0.035 0.470 0.983 1.090 sum -13.532 -5.572 -12.238 19.077 Atomic orbital electron populations 1.20849 0.90954 1.03096 1.02511 1.20129 0.96301 0.93190 0.97211 1.21006 0.93825 0.97845 1.01887 1.21590 0.94486 0.97556 0.96906 1.19873 0.92756 0.94580 1.05889 1.17921 0.86741 0.80369 0.78455 1.90764 1.69869 1.37529 1.44435 1.48911 1.08551 1.24586 1.52240 1.23191 0.98658 0.87833 0.93951 1.22948 0.94424 0.99790 0.95469 0.89945 1.22137 0.95799 0.97874 0.94049 0.90571 1.22746 0.79862 1.01633 0.97716 1.21812 0.96375 0.95019 0.99753 0.91591 1.21485 0.97830 0.97710 0.97320 1.22176 0.96619 1.00371 0.98113 1.20502 0.92761 0.91037 0.88571 0.91487 1.44604 1.09920 1.64410 1.13334 1.19265 0.98247 1.27510 0.91361 0.90761 1.24786 0.96131 1.00936 0.98521 1.70028 1.04366 1.49113 1.33527 0.86173 0.76896 0.79146 0.83847 1.21733 1.21799 1.20806 1.21100 0.87044 0.95916 0.88018 1.21182 0.93914 0.97341 0.95655 1.20991 0.93737 0.97816 1.02134 0.90909 0.91334 0.91231 0.85399 0.84750 0.89715 0.90252 0.90216 0.90668 0.93220 0.92454 0.93046 0.92060 0.93870 0.93019 0.93253 0.85109 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.07 -0.61 5.89 -104.53 -0.62 -1.22 16 3 C -0.13 -1.19 9.68 -39.64 -0.38 -1.57 16 4 C -0.09 -0.95 7.81 -39.19 -0.31 -1.26 16 5 C -0.13 -1.68 5.62 -104.97 -0.59 -2.27 16 6 C 0.58 9.06 7.62 -12.33 -0.09 8.97 16 7 O -0.55 -10.29 17.10 5.32 0.09 -10.20 16 8 N -0.61 -8.99 3.32 -170.25 -0.56 -9.56 16 9 C 0.09 1.14 4.56 -2.29 -0.01 1.13 16 10 C -0.10 -1.71 3.47 -88.47 -0.31 -2.02 16 11 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.08 -1.31 3.15 -88.65 -0.28 -1.59 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 14 C 0.10 1.53 6.33 -2.39 -0.02 1.51 16 15 C -0.11 -1.95 2.86 -90.28 -0.26 -2.20 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -1.69 5.30 -26.75 -0.14 -1.83 16 18 C -0.13 -2.14 5.52 -26.60 -0.15 -2.28 16 19 C 0.18 3.28 3.16 -66.99 -0.21 3.07 16 20 H 0.07 1.20 7.99 -51.93 -0.42 0.79 16 21 N -0.60 -13.95 2.87 -163.17 -0.47 -14.42 16 22 C -0.23 -6.15 9.99 -15.06 -0.15 -6.30 16 23 H 0.07 1.88 7.79 -52.48 -0.41 1.47 16 24 C -0.01 -0.21 5.47 -17.43 -0.10 -0.31 16 25 N -0.92 -26.08 9.77 55.49 0.54 -25.54 16 26 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.20 4.66 4.37 -3.11 -0.01 4.65 16 31 C -0.06 -0.74 9.61 -39.19 -0.38 -1.11 16 32 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.07 0.37 8.08 -51.93 -0.42 -0.04 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.33 5.73 -52.49 -0.30 1.03 16 38 H 0.09 1.02 5.14 -51.93 -0.27 0.76 16 39 H 0.08 0.95 5.59 -51.93 -0.29 0.66 16 40 H 0.08 1.13 5.31 -51.93 -0.28 0.86 16 41 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 42 H 0.05 0.69 5.79 -51.93 -0.30 0.39 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.68 5.67 -51.93 -0.29 0.39 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.05 1.34 7.23 -51.93 -0.38 0.96 16 48 H 0.05 1.28 7.23 -51.93 -0.38 0.91 16 49 H 0.13 1.53 7.99 -52.49 -0.42 1.11 16 50 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -30.81 372.82 -11.31 -42.12 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.49 Total: 2.08 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.02 Total: -6.63 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.49 Total: -49.52 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.81 -11.31 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.463 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds