Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.85263 * 2 1 4 4 C 1.37957 * 120.14628 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85200 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14788 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00214 * 214.26179 * 6 5 4 8 8 N 1.34777 * 119.99483 * 34.25415 * 6 5 4 9 9 C 1.48165 * 127.83944 * 356.38958 * 8 6 5 10 10 C 1.54587 * 104.84503 * 139.84195 * 9 8 6 11 11 H 1.09000 * 111.93988 * 263.70397 * 10 9 8 12 12 C 1.55261 * 104.36659 * 24.66452 * 10 9 8 13 13 H 1.08995 * 111.05859 * 239.13074 * 12 10 9 14 14 C 1.48138 * 127.83583 * 176.34462 * 8 6 5 15 15 C 1.53033 * 109.85928 * 116.16686 * 12 10 9 16 16 H 1.09000 * 109.63569 * 180.26146 * 15 12 10 17 17 C 1.53041 * 109.21646 * 300.40692 * 15 12 10 18 18 C 1.52931 * 110.01344 * 59.32181 * 17 15 12 19 19 C 1.53231 * 108.89990 * 140.76102 * 10 9 8 20 20 H 1.08998 * 110.49568 * 68.61850 * 19 10 9 21 21 N 1.47696 * 108.05115 * 189.62110 * 19 10 9 22 22 C 1.36933 * 122.06947 * 239.28585 * 21 19 10 23 23 H 1.08006 * 120.00121 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00551 * 180.27733 * 22 21 19 25 25 N 1.31627 * 119.99339 * 359.72369 * 24 22 21 26 26 Si 1.86792 * 120.00482 * 179.72648 * 24 22 21 27 27 H 1.48507 * 109.47274 * 90.00055 * 26 24 22 28 28 H 1.48502 * 109.47306 * 209.99651 * 26 24 22 29 29 H 1.48491 * 109.47442 * 330.00200 * 26 24 22 30 30 C 1.47639 * 115.86225 * 59.56269 * 21 19 10 31 31 C 1.39575 * 119.71301 * 0.25276 * 5 4 3 32 32 C 1.37957 * 119.85095 * 359.47136 * 31 5 4 33 33 H 1.08996 * 109.46898 * 90.00651 * 1 2 3 34 34 H 1.08999 * 109.46700 * 210.00478 * 1 2 3 35 35 H 1.08998 * 109.46972 * 330.00592 * 1 2 3 36 36 H 1.07994 * 119.92594 * 359.96745 * 3 2 1 37 37 H 1.08002 * 120.07448 * 179.97438 * 4 3 2 38 38 H 1.08995 * 110.42383 * 259.03515 * 9 8 6 39 39 H 1.09001 * 110.41922 * 21.39108 * 9 8 6 40 40 H 1.08997 * 110.40319 * 100.64633 * 14 8 6 41 41 H 1.09002 * 110.49598 * 338.29232 * 14 8 6 42 42 H 1.08998 * 109.38204 * 299.15291 * 17 15 12 43 43 H 1.08999 * 109.37686 * 179.49015 * 17 15 12 44 44 H 1.09003 * 109.45049 * 240.65639 * 18 17 15 45 45 H 1.09003 * 109.45362 * 120.73164 * 18 17 15 46 46 H 0.97003 * 119.99753 * 179.97438 * 25 24 22 47 47 H 1.08999 * 109.99631 * 119.21300 * 30 21 19 48 48 H 1.09002 * 109.98962 * 240.59230 * 30 21 19 49 49 H 1.08000 * 120.07986 * 179.73060 * 31 5 4 50 50 H 1.07997 * 119.92838 * 180.27895 * 32 31 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3625 -0.8699 -0.5921 8 7 6.4285 0.9648 0.6575 9 6 5.8716 2.1395 1.3683 10 6 6.7266 2.2691 2.6497 11 1 6.2510 1.7919 3.5066 12 6 8.0721 1.5853 2.2858 13 1 8.2823 0.7526 2.9569 14 6 7.8940 1.0908 0.8336 15 6 9.2048 2.6137 2.3235 16 1 10.1467 2.1309 2.0630 17 6 8.9048 3.7304 1.3209 18 6 7.5778 4.4053 1.6707 19 6 6.9851 3.7540 2.9258 20 1 6.0614 4.2548 3.2158 21 7 7.9873 3.8508 4.0064 22 6 7.7232 4.4912 5.1876 23 1 6.7569 4.9450 5.3516 24 6 8.6990 4.5616 6.1724 25 7 9.8764 4.0081 5.9727 26 14 8.3413 5.4417 7.7807 27 1 7.7767 4.4767 8.7581 28 1 9.5997 6.0151 8.3217 29 1 7.3630 6.5328 7.5409 30 6 9.2935 3.2200 3.7318 31 6 3.5754 -1.2069 -0.0054 32 6 2.1958 -1.2000 -0.0001 33 1 -0.3633 -0.0001 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3633 0.8900 0.5137 36 1 1.6521 2.1332 -0.0005 37 1 4.1117 2.1445 0.0001 38 1 5.9630 3.0347 0.7533 39 1 4.8284 1.9650 1.6320 40 1 8.2998 1.8193 0.1317 41 1 8.3791 0.1240 0.6993 42 1 8.8428 3.3087 0.3177 43 1 9.7057 4.4691 1.3520 44 1 6.8821 4.2908 0.8393 45 1 7.7480 5.4655 1.8578 46 1 10.5585 4.0576 6.6607 47 1 10.0843 3.9693 3.7683 48 1 9.4888 2.4345 4.4618 49 1 4.1118 -2.1443 -0.0098 50 1 1.6523 -2.1332 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087408043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 18.279642 kcal Electronic energy + Delta-G solvation = -30595.572099 eV Core-core repulsion = 26780.711425 eV Total energy + Delta-G solvation = -3814.860674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24211 -40.80593 -39.31141 -37.23257 -35.06146 -33.89819 -33.22443 -32.05328 -31.70600 -31.41084 -29.19376 -28.06211 -27.07763 -25.44919 -23.71932 -23.62415 -22.95418 -22.29679 -22.17816 -20.79282 -19.23421 -18.38888 -17.92985 -17.39843 -16.94768 -16.76992 -16.38414 -16.35421 -16.13765 -15.64867 -15.31887 -15.22516 -14.62767 -14.48068 -14.44098 -14.21151 -14.11510 -13.74745 -13.70267 -13.44314 -13.02942 -12.99052 -12.90341 -12.85432 -12.82693 -12.56797 -12.54615 -12.30193 -12.17738 -12.06705 -11.89764 -11.84126 -11.74060 -11.17886 -11.02313 -10.80532 -10.70465 -10.47944 -9.94804 -9.81827 -9.56814 -8.80475 -7.72026 -5.09964 -0.07511 0.41646 1.48012 1.48447 1.56850 1.66252 1.90129 2.53562 2.79765 3.34427 3.40690 3.49725 3.69034 3.78127 3.85461 3.90214 4.01250 4.02243 4.14198 4.20308 4.27544 4.30695 4.41182 4.42020 4.45270 4.50847 4.61866 4.67101 4.73737 4.79267 4.81605 4.83658 4.89446 4.90570 5.00381 5.04847 5.10225 5.13833 5.26440 5.27144 5.35108 5.38840 5.40383 5.45702 5.52789 5.56696 5.61862 5.65760 5.80478 5.93032 5.97377 6.31794 6.47905 7.01065 7.21440 7.92965 8.43314 9.30967 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003109 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.846618 B = 9003.009312 C =10084.844608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.089 4.089 5 C -0.155 4.155 6 C 0.573 3.427 7 O -0.588 6.588 8 N -0.611 5.611 9 C 0.100 3.900 10 C -0.100 4.100 11 H 0.062 0.938 12 C -0.076 4.076 13 H 0.054 0.946 14 C 0.110 3.890 15 C -0.101 4.101 16 H 0.074 0.926 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.173 3.827 20 H 0.074 0.926 21 N -0.616 5.616 22 C -0.237 4.237 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.952 5.952 26 Si 0.969 3.031 27 H -0.292 1.292 28 H -0.301 1.301 29 H -0.267 1.267 30 C 0.216 3.784 31 C -0.079 4.079 32 C -0.131 4.131 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.241 0.759 47 H 0.013 0.987 48 H 0.005 0.995 49 H 0.120 0.880 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.470 -4.552 -15.051 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.157 4.157 6 C 0.365 3.635 7 O -0.470 6.470 8 N -0.341 5.341 9 C -0.022 4.022 10 C -0.122 4.122 11 H 0.080 0.920 12 C -0.096 4.096 13 H 0.073 0.927 14 C -0.011 4.011 15 C -0.121 4.121 16 H 0.093 0.907 17 C -0.140 4.140 18 C -0.166 4.166 19 C 0.067 3.933 20 H 0.092 0.908 21 N -0.340 5.340 22 C -0.367 4.367 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.603 5.603 26 Si 0.798 3.202 27 H -0.219 1.219 28 H -0.228 1.228 29 H -0.192 1.192 30 C 0.091 3.909 31 C -0.098 4.098 32 C -0.149 4.149 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.031 0.969 48 H 0.023 0.977 49 H 0.138 0.862 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.086 -5.035 -15.270 23.462 hybrid contribution 0.968 0.115 1.630 1.899 sum -16.118 -4.920 -13.640 21.681 Atomic orbital electron populations 1.20924 0.88664 1.04165 1.03574 1.20549 0.97987 0.92739 0.95203 1.21369 0.93283 0.99211 1.00732 1.21736 0.95326 0.97005 0.96651 1.19797 0.91124 0.96053 1.08775 1.18400 0.87903 0.79556 0.77674 1.90733 1.70950 1.38973 1.46308 1.48926 1.08316 1.24896 1.52007 1.23181 0.98723 0.88094 0.92230 1.22764 0.94734 0.98035 0.96644 0.91964 1.22012 0.95591 0.96885 0.95095 0.92731 1.22624 0.80513 1.01609 0.96403 1.21649 0.97556 0.95939 0.96936 0.90746 1.21472 0.97684 0.96700 0.98101 1.22102 0.97224 0.99213 0.98026 1.20801 0.91954 0.92423 0.88166 0.90789 1.44873 1.11069 1.64039 1.13988 1.19688 0.98207 1.26423 0.92348 0.89949 1.25550 0.96316 1.02588 1.01707 1.70283 1.05132 1.50923 1.33927 0.85212 0.76399 0.78302 0.80252 1.21934 1.22775 1.19220 1.20639 0.86312 0.93658 0.90281 1.21263 0.95093 0.96776 0.96689 1.21258 0.92822 0.99371 1.01414 0.89682 0.90465 0.90067 0.82633 0.83531 0.87271 0.88437 0.88388 0.91540 0.89947 0.93327 0.88916 0.93216 0.94939 0.96881 0.97701 0.86181 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.01 71.24 0.71 -0.23 16 2 C -0.06 -0.93 5.89 -19.81 -0.12 -1.04 16 3 C -0.13 -1.89 9.68 22.23 0.22 -1.67 16 4 C -0.09 -1.67 7.81 22.53 0.18 -1.49 16 5 C -0.15 -3.84 5.62 -20.09 -0.11 -3.95 16 6 C 0.57 17.53 7.62 86.79 0.66 18.19 16 7 O -0.59 -22.23 17.10 -3.88 -0.07 -22.30 16 8 N -0.61 -16.81 3.32 -810.83 -2.69 -19.50 16 9 C 0.10 2.32 4.56 86.60 0.39 2.71 16 10 C -0.10 -3.15 3.47 -9.40 -0.03 -3.19 16 11 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 12 C -0.08 -2.50 3.15 -9.52 -0.03 -2.53 16 13 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 14 C 0.11 3.14 6.33 86.55 0.55 3.68 16 15 C -0.10 -3.60 2.86 -10.57 -0.03 -3.63 16 16 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 17 C -0.10 -3.04 5.30 30.59 0.16 -2.88 16 18 C -0.13 -3.69 5.52 30.68 0.17 -3.52 16 19 C 0.17 6.06 3.16 44.95 0.14 6.20 16 20 H 0.07 2.48 7.99 -2.39 -0.02 2.46 16 21 N -0.62 -29.18 2.87 -670.15 -1.92 -31.11 16 22 C -0.24 -12.59 9.99 84.03 0.84 -11.76 16 23 H 0.08 4.14 7.79 -2.91 -0.02 4.12 16 24 C -0.07 -3.87 5.47 84.86 0.46 -3.40 16 25 N -0.95 -56.73 9.77 21.65 0.21 -56.52 16 26 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 30 C 0.22 10.40 4.37 86.36 0.38 10.77 16 31 C -0.08 -1.82 9.61 22.53 0.22 -1.60 16 32 C -0.13 -2.22 9.68 22.23 0.22 -2.00 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 35 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.15 2.28 5.73 -2.91 -0.02 2.26 16 38 H 0.11 2.06 5.14 -2.39 -0.01 2.04 16 39 H 0.10 1.99 5.59 -2.39 -0.01 1.98 16 40 H 0.10 2.45 5.31 -2.39 -0.01 2.44 16 41 H 0.07 2.03 7.92 -2.39 -0.02 2.02 16 42 H 0.08 1.96 5.79 -2.39 -0.01 1.95 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.96 5.67 -2.39 -0.01 1.95 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 47 H 0.01 0.72 7.23 -2.39 -0.02 0.70 16 48 H 0.00 0.27 7.23 -2.39 -0.02 0.25 16 49 H 0.12 2.88 7.99 -2.91 -0.02 2.86 16 50 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.65 372.82 3.48 -68.17 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.95 Total: 15.24 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.97 Total: -1.33 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.40 Total: -107.13 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.65 3.48 -68.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087408043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.451 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds