Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53785 * 112.60353 * 2 1 4 4 N 1.47222 * 106.37026 * 141.05564 * 3 2 1 5 5 C 1.36929 * 126.70054 * 148.74633 * 4 3 2 6 6 H 1.08001 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00050 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47352 * 60.00526 * 9 7 5 11 11 H 1.48507 * 109.47062 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47238 * 299.99782 * 9 7 5 13 13 C 1.47213 * 106.59275 * 328.71761 * 4 3 2 14 14 C 1.53780 * 106.38144 * 31.27727 * 13 4 3 15 15 H 1.08998 * 112.60585 * 218.96660 * 14 13 4 16 16 C 1.53787 * 109.34694 * 93.96196 * 14 13 4 17 17 N 1.47220 * 106.37596 * 228.53078 * 16 14 13 18 18 C 1.34770 * 126.69858 * 211.26740 * 17 16 14 19 19 O 1.21283 * 120.00060 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00289 * 0.02706 * 18 17 16 21 21 H 1.09005 * 115.56375 * 34.30463 * 20 18 17 22 22 C 1.53006 * 117.49787 * 248.62073 * 20 18 17 23 23 C 1.53000 * 59.99985 * 252.50852 * 22 20 18 24 24 H 1.09001 * 117.49567 * 107.51388 * 23 22 20 25 25 C 1.50701 * 117.49878 * 252.51067 * 23 22 20 26 26 C 1.38234 * 120.00243 * 188.60884 * 25 23 22 27 27 C 1.38234 * 120.00240 * 180.02562 * 26 25 23 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38238 * 119.99752 * 359.47832 * 28 27 26 30 30 C 1.38234 * 120.00005 * 0.52168 * 29 28 27 31 31 C 1.47216 * 106.59691 * 31.52998 * 17 16 14 32 32 H 1.08997 * 109.47212 * 301.55587 * 1 2 3 33 33 H 1.09000 * 109.46824 * 61.55411 * 1 2 3 34 34 H 1.08994 * 109.47067 * 181.54921 * 1 2 3 35 35 H 1.09004 * 110.07452 * 260.27936 * 3 2 1 36 36 H 1.09002 * 110.07308 * 21.82533 * 3 2 1 37 37 H 0.97006 * 120.00109 * 179.97438 * 8 7 5 38 38 H 1.08999 * 110.07599 * 272.04581 * 13 4 3 39 39 H 1.09008 * 110.06842 * 150.50244 * 13 4 3 40 40 H 1.08998 * 110.07537 * 109.30193 * 16 14 13 41 41 H 1.08996 * 110.07526 * 347.75916 * 16 14 13 42 42 H 1.09004 * 117.49806 * 145.01895 * 22 20 18 43 43 H 1.09002 * 117.51454 * 359.97438 * 22 20 18 44 44 H 1.07999 * 119.99751 * 359.97438 * 26 25 23 45 45 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 47 47 H 1.07999 * 119.99924 * 180.23487 * 29 28 27 48 48 H 1.08001 * 120.00310 * 179.72165 * 30 29 28 49 49 H 1.08993 * 110.07764 * 87.69126 * 31 17 16 50 50 H 1.08999 * 110.07067 * 209.23914 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1211 1.4197 0.0000 4 7 3.2948 1.3805 0.8879 5 6 4.4339 2.1315 0.7721 6 1 4.5333 2.8408 -0.0362 7 6 5.4610 1.9812 1.6937 8 7 5.3397 1.1172 2.6791 9 14 7.0152 3.0052 1.5354 10 1 6.6686 4.4469 1.6166 11 1 7.9510 2.6579 2.6350 12 1 7.6621 2.7244 0.2285 13 6 3.0042 0.3768 1.9248 14 6 2.1092 -0.6841 1.2627 15 1 1.3241 -1.0441 1.9277 16 6 2.9852 -1.8332 0.7364 17 7 2.5536 -2.0833 -0.6487 18 6 2.5684 -3.2653 -1.2960 19 8 2.1828 -3.3330 -2.4439 20 6 3.0641 -4.5030 -0.5935 21 1 2.8486 -4.5562 0.4738 22 6 4.3810 -5.1116 -1.0795 23 6 3.0560 -5.8141 -1.3821 24 1 2.6923 -5.7818 -2.4091 25 6 2.7506 -7.0802 -0.6239 26 6 1.6600 -7.8521 -0.9782 27 6 1.3796 -9.0132 -0.2824 28 6 2.1867 -9.3996 0.7712 29 6 3.2805 -8.6305 1.1221 30 6 3.5609 -7.4694 0.4263 31 6 2.1086 -0.7889 -1.1907 32 1 -0.3633 0.5378 0.8757 33 1 -0.3633 0.4895 -0.9036 34 1 -0.3633 -1.0272 0.0278 35 1 2.4245 1.6987 -1.0091 36 1 1.3875 2.1304 0.3806 37 1 6.0576 1.0118 3.3230 38 1 2.4788 0.8418 2.7589 39 1 3.9306 -0.0800 2.2733 40 1 2.8343 -2.7266 1.3424 41 1 4.0353 -1.5416 0.7541 42 1 5.0320 -5.5652 -0.3320 43 1 4.8889 -4.6173 -1.9076 44 1 1.0264 -7.5475 -1.7981 45 1 0.5272 -9.6160 -0.5591 46 1 1.9651 -10.3044 1.3176 47 1 3.9132 -8.9344 1.9429 48 1 4.4128 -6.8662 0.7034 49 1 2.9541 -0.2535 -1.6225 50 1 1.3384 -0.9445 -1.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092213366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 47.383946 kcal Electronic energy + Delta-G solvation = -29678.512120 eV Core-core repulsion = 25864.913503 eV Total energy + Delta-G solvation = -3813.598617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47588 -39.67261 -38.47017 -36.26303 -34.88916 -32.86797 -31.15526 -30.90619 -30.68400 -29.97789 -26.97172 -25.90345 -25.17711 -24.07118 -23.64320 -22.59238 -22.17977 -20.50697 -20.16364 -18.97454 -18.49979 -17.61573 -16.85741 -16.56160 -15.75332 -15.40363 -15.25807 -14.91830 -14.74043 -14.44934 -14.21711 -13.80754 -13.56898 -13.47007 -13.29783 -13.07417 -12.83535 -12.66812 -12.42601 -12.13722 -12.02794 -11.71217 -11.65092 -11.47219 -11.33556 -11.17891 -10.93564 -10.86708 -10.81531 -10.75582 -10.52043 -10.16838 -10.16232 -9.93438 -9.80028 -9.66202 -9.56695 -9.11395 -8.76649 -8.73578 -8.31059 -6.93819 -5.70906 -3.15233 1.09952 1.20996 2.66346 3.17478 3.36720 3.41479 3.42030 3.52175 3.96811 4.37110 4.43284 4.60495 4.70413 4.73128 4.81234 4.86514 4.93283 5.00246 5.09105 5.10517 5.22730 5.29068 5.41125 5.43630 5.55893 5.58149 5.67142 5.70242 5.77889 5.80694 5.83107 5.88439 5.94885 5.96389 6.03693 6.16679 6.26866 6.28987 6.31555 6.31922 6.34661 6.43715 6.46906 6.52662 6.73120 6.76041 6.80075 6.88733 7.34637 7.54821 7.75427 7.86972 8.32205 8.38951 9.14719 9.75242 10.42514 11.30575 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002764 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.212791 B =10128.294303 C =11065.352185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C 0.144 3.856 4 N -0.595 5.595 5 C -0.218 4.218 6 H 0.078 0.922 7 C -0.011 4.011 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.285 1.285 13 C 0.141 3.859 14 C -0.116 4.116 15 H 0.077 0.923 16 C 0.113 3.887 17 N -0.606 5.606 18 C 0.558 3.442 19 O -0.555 6.555 20 C -0.169 4.169 21 H 0.124 0.876 22 C -0.142 4.142 23 C -0.088 4.088 24 H 0.126 0.874 25 C -0.049 4.049 26 C -0.110 4.110 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.117 4.117 30 C -0.119 4.119 31 C 0.124 3.876 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.022 0.978 37 H 0.253 0.747 38 H 0.009 0.991 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.125 0.875 49 H 0.072 0.928 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 -17.228 -3.003 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C 0.017 3.983 4 N -0.318 5.318 5 C -0.346 4.346 6 H 0.096 0.904 7 C -0.206 4.206 8 N -0.571 5.571 9 Si 0.746 3.254 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.016 3.984 14 C -0.137 4.137 15 H 0.096 0.904 16 C -0.009 4.009 17 N -0.337 5.337 18 C 0.347 3.653 19 O -0.434 6.434 20 C -0.190 4.190 21 H 0.142 0.858 22 C -0.180 4.180 23 C -0.106 4.106 24 H 0.144 0.856 25 C -0.049 4.049 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.135 4.135 30 C -0.137 4.137 31 C 0.002 3.998 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.145 0.855 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.090 0.910 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.669 -17.271 -3.542 18.849 hybrid contribution 0.684 0.623 0.152 0.937 sum -5.985 -16.648 -3.391 18.013 Atomic orbital electron populations 1.21639 0.93733 1.01118 1.01636 1.22235 0.94830 0.97428 0.94579 1.21379 0.89986 0.92035 0.94872 1.44484 1.14156 1.44553 1.28621 1.19039 0.91531 1.14576 1.09426 0.90414 1.24745 0.98702 0.99816 0.97334 1.69563 1.32816 1.37975 1.16763 0.86136 0.82647 0.79582 0.77049 1.21214 1.21542 1.21192 1.21970 0.99127 0.87908 0.89424 1.23061 0.97760 0.96464 0.96371 0.90428 1.22336 1.00124 0.97840 0.80633 1.48510 1.62759 1.07331 1.15075 1.19132 0.77957 0.82593 0.85622 1.90659 1.49478 1.85599 1.17679 1.22292 1.04113 0.92107 1.00453 0.85782 1.23121 0.89669 1.01605 1.03557 1.21087 1.01301 0.88451 0.99780 0.85632 1.19167 0.95334 0.94722 0.95699 1.21019 0.96845 0.94760 1.00219 1.21136 0.99682 0.96773 0.96113 1.21156 0.95641 0.99992 0.97677 1.21139 0.97588 0.95063 0.99751 1.21125 0.99800 0.97091 0.95710 1.22177 0.99050 0.82634 0.95928 0.92286 0.92761 0.93087 0.93774 0.96048 0.93563 0.97271 0.85482 0.91692 0.89805 0.87373 0.87680 0.85883 0.86067 0.86217 0.86004 0.85701 0.91010 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.52 37.16 0.32 -1.44 16 2 C -0.09 -1.50 1.10 -152.54 -0.17 -1.67 16 3 C 0.14 2.87 6.21 -3.24 -0.02 2.85 16 4 N -0.59 -14.32 3.39 -171.12 -0.58 -14.90 16 5 C -0.22 -5.77 10.34 -15.06 -0.16 -5.93 16 6 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 7 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 8 N -0.92 -25.32 10.08 55.49 0.56 -24.76 16 9 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.14 3.17 5.56 -3.25 -0.02 3.16 16 14 C -0.12 -2.06 3.68 -88.83 -0.33 -2.38 16 15 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 16 C 0.11 1.90 6.30 -3.24 -0.02 1.88 16 17 N -0.61 -10.30 3.32 -171.37 -0.57 -10.87 16 18 C 0.56 9.35 7.66 -10.99 -0.08 9.26 16 19 O -0.55 -10.79 16.49 5.56 0.09 -10.70 16 20 C -0.17 -2.22 5.19 -91.77 -0.48 -2.70 16 21 H 0.12 1.51 7.02 -51.93 -0.36 1.15 16 22 C -0.14 -1.62 9.56 -26.73 -0.26 -1.87 16 23 C -0.09 -1.04 5.55 -91.77 -0.51 -1.55 16 24 H 0.13 1.62 7.67 -51.93 -0.40 1.22 16 25 C -0.05 -0.54 5.61 -104.62 -0.59 -1.12 16 26 C -0.11 -1.13 9.74 -39.58 -0.39 -1.52 16 27 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 28 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 30 C -0.12 -1.19 9.30 -39.58 -0.37 -1.55 16 31 C 0.12 2.17 6.13 -3.07 -0.02 2.15 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.86 7.51 -51.93 -0.39 0.47 16 36 H 0.02 0.43 7.90 -51.93 -0.41 0.02 16 37 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.13 3.18 4.81 -51.92 -0.25 2.93 16 40 H 0.06 0.93 6.82 -51.93 -0.35 0.57 16 41 H 0.08 1.63 7.39 -51.93 -0.38 1.25 16 42 H 0.11 1.01 6.18 -51.93 -0.32 0.69 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 48 H 0.13 1.09 6.02 -52.49 -0.32 0.78 16 49 H 0.07 1.37 7.41 -51.93 -0.38 0.99 16 50 H 0.07 1.19 7.62 -51.93 -0.40 0.80 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -30.12 393.54 -11.69 -41.81 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.73 Total: 4.37 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -4.37 Total: -7.22 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.59 Total: -50.54 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.12 -11.69 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092213366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.190 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds