Wall clock time and date at job start Sat Apr 11 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53785 * 112.60353 * 2 1 4 4 N 1.47222 * 106.37026 * 141.05564 * 3 2 1 5 5 C 1.36929 * 126.70054 * 148.74633 * 4 3 2 6 6 H 1.08001 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00050 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47352 * 60.00526 * 9 7 5 11 11 H 1.48507 * 109.47062 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47238 * 299.99782 * 9 7 5 13 13 C 1.47213 * 106.59275 * 328.71761 * 4 3 2 14 14 C 1.53780 * 106.38144 * 31.27727 * 13 4 3 15 15 H 1.08998 * 112.60585 * 218.96660 * 14 13 4 16 16 C 1.53787 * 109.34694 * 93.96196 * 14 13 4 17 17 N 1.47220 * 106.37596 * 228.53078 * 16 14 13 18 18 C 1.34770 * 126.69858 * 211.26740 * 17 16 14 19 19 O 1.21283 * 120.00060 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00289 * 0.02706 * 18 17 16 21 21 H 1.09005 * 115.56375 * 34.30463 * 20 18 17 22 22 C 1.53006 * 117.49787 * 248.62073 * 20 18 17 23 23 C 1.53000 * 59.99985 * 252.50852 * 22 20 18 24 24 H 1.09001 * 117.49567 * 107.51388 * 23 22 20 25 25 C 1.50701 * 117.49878 * 252.51067 * 23 22 20 26 26 C 1.38234 * 120.00243 * 188.60884 * 25 23 22 27 27 C 1.38234 * 120.00240 * 180.02562 * 26 25 23 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38238 * 119.99752 * 359.47832 * 28 27 26 30 30 C 1.38234 * 120.00005 * 0.52168 * 29 28 27 31 31 C 1.47216 * 106.59691 * 31.52998 * 17 16 14 32 32 H 1.08997 * 109.47212 * 301.55587 * 1 2 3 33 33 H 1.09000 * 109.46824 * 61.55411 * 1 2 3 34 34 H 1.08994 * 109.47067 * 181.54921 * 1 2 3 35 35 H 1.09004 * 110.07452 * 260.27936 * 3 2 1 36 36 H 1.09002 * 110.07308 * 21.82533 * 3 2 1 37 37 H 0.97006 * 120.00109 * 179.97438 * 8 7 5 38 38 H 1.08999 * 110.07599 * 272.04581 * 13 4 3 39 39 H 1.09008 * 110.06842 * 150.50244 * 13 4 3 40 40 H 1.08998 * 110.07537 * 109.30193 * 16 14 13 41 41 H 1.08996 * 110.07526 * 347.75916 * 16 14 13 42 42 H 1.09004 * 117.49806 * 145.01895 * 22 20 18 43 43 H 1.09002 * 117.51454 * 359.97438 * 22 20 18 44 44 H 1.07999 * 119.99751 * 359.97438 * 26 25 23 45 45 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 47 47 H 1.07999 * 119.99924 * 180.23487 * 29 28 27 48 48 H 1.08001 * 120.00310 * 179.72165 * 30 29 28 49 49 H 1.08993 * 110.07764 * 87.69126 * 31 17 16 50 50 H 1.08999 * 110.07067 * 209.23914 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1211 1.4197 0.0000 4 7 3.2948 1.3805 0.8879 5 6 4.4339 2.1315 0.7721 6 1 4.5333 2.8408 -0.0362 7 6 5.4610 1.9812 1.6937 8 7 5.3397 1.1172 2.6791 9 14 7.0152 3.0052 1.5354 10 1 6.6686 4.4469 1.6166 11 1 7.9510 2.6579 2.6350 12 1 7.6621 2.7244 0.2285 13 6 3.0042 0.3768 1.9248 14 6 2.1092 -0.6841 1.2627 15 1 1.3241 -1.0441 1.9277 16 6 2.9852 -1.8332 0.7364 17 7 2.5536 -2.0833 -0.6487 18 6 2.5684 -3.2653 -1.2960 19 8 2.1828 -3.3330 -2.4439 20 6 3.0641 -4.5030 -0.5935 21 1 2.8486 -4.5562 0.4738 22 6 4.3810 -5.1116 -1.0795 23 6 3.0560 -5.8141 -1.3821 24 1 2.6923 -5.7818 -2.4091 25 6 2.7506 -7.0802 -0.6239 26 6 1.6600 -7.8521 -0.9782 27 6 1.3796 -9.0132 -0.2824 28 6 2.1867 -9.3996 0.7712 29 6 3.2805 -8.6305 1.1221 30 6 3.5609 -7.4694 0.4263 31 6 2.1086 -0.7889 -1.1907 32 1 -0.3633 0.5378 0.8757 33 1 -0.3633 0.4895 -0.9036 34 1 -0.3633 -1.0272 0.0278 35 1 2.4245 1.6987 -1.0091 36 1 1.3875 2.1304 0.3806 37 1 6.0576 1.0118 3.3230 38 1 2.4788 0.8418 2.7589 39 1 3.9306 -0.0800 2.2733 40 1 2.8343 -2.7266 1.3424 41 1 4.0353 -1.5416 0.7541 42 1 5.0320 -5.5652 -0.3320 43 1 4.8889 -4.6173 -1.9076 44 1 1.0264 -7.5475 -1.7981 45 1 0.5272 -9.6160 -0.5591 46 1 1.9651 -10.3044 1.3176 47 1 3.9132 -8.9344 1.9429 48 1 4.4128 -6.8662 0.7034 49 1 2.9541 -0.2535 -1.6225 50 1 1.3384 -0.9445 -1.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092213366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:08 Heat of formation + Delta-G solvation = 33.422169 kcal Electronic energy + Delta-G solvation = -29679.117548 eV Core-core repulsion = 25864.913503 eV Total energy + Delta-G solvation = -3814.204045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76892 -40.70080 -39.66322 -37.30859 -36.52817 -34.52513 -32.53468 -31.83863 -31.65277 -31.44391 -28.22440 -27.68481 -26.75905 -25.08637 -24.71681 -23.75907 -23.21349 -21.86277 -21.32468 -20.37499 -19.84880 -18.78411 -18.49245 -17.60670 -17.03521 -16.90098 -16.56732 -16.01200 -15.86881 -15.74726 -15.50744 -15.16308 -14.95562 -14.62865 -14.30415 -14.24004 -13.90317 -13.83523 -13.79597 -13.51694 -13.30545 -13.11973 -12.97572 -12.87567 -12.71034 -12.52649 -12.37392 -12.21645 -11.97249 -11.94114 -11.83627 -11.68817 -11.50265 -11.46778 -11.36525 -11.26952 -11.00291 -10.71374 -9.80002 -9.74535 -9.49566 -8.88029 -7.72908 -5.19206 0.37503 0.52402 1.40388 1.48783 1.50107 1.56308 1.90647 2.50724 2.66709 3.07862 3.27429 3.34016 3.53905 3.61143 3.69193 3.73893 3.80586 3.90982 3.98035 4.06169 4.17032 4.22074 4.26744 4.30264 4.32101 4.37887 4.56639 4.61627 4.66045 4.69880 4.74010 4.79698 4.82719 4.86169 4.89678 5.00927 5.03523 5.05650 5.14794 5.15973 5.19889 5.24589 5.28266 5.41710 5.52132 5.58802 5.60814 5.65385 5.72607 5.85862 6.13287 6.40378 6.51642 7.04684 7.14205 7.79642 8.46813 9.25757 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002764 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.212791 B =10128.294303 C =11065.352185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.141 3.859 4 N -0.616 5.616 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.060 4.060 8 N -0.941 5.941 9 Si 0.974 3.026 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.146 3.854 14 C -0.107 4.107 15 H 0.104 0.896 16 C 0.123 3.877 17 N -0.606 5.606 18 C 0.555 3.445 19 O -0.586 6.586 20 C -0.178 4.178 21 H 0.139 0.861 22 C -0.133 4.133 23 C -0.077 4.077 24 H 0.110 0.890 25 C -0.066 4.066 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.123 4.123 30 C -0.127 4.127 31 C 0.126 3.874 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.248 0.752 38 H -0.012 1.012 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.135 0.865 49 H 0.047 0.953 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -19.071 -2.474 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C 0.015 3.985 4 N -0.340 5.340 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.253 4.253 8 N -0.591 5.591 9 Si 0.803 3.197 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.020 3.980 14 C -0.127 4.127 15 H 0.122 0.878 16 C 0.000 4.000 17 N -0.337 5.337 18 C 0.346 3.654 19 O -0.467 6.467 20 C -0.198 4.198 21 H 0.156 0.844 22 C -0.170 4.170 23 C -0.096 4.096 24 H 0.128 0.872 25 C -0.066 4.066 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.146 4.146 29 C -0.141 4.141 30 C -0.145 4.145 31 C 0.003 3.997 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.006 0.994 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.152 0.848 49 H 0.065 0.935 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.459 -19.115 -3.024 20.740 hybrid contribution 0.906 1.186 -0.052 1.494 sum -6.553 -17.929 -3.076 19.335 Atomic orbital electron populations 1.21600 0.90878 1.02162 1.02758 1.22160 0.96824 0.95109 0.93817 1.21531 0.88899 0.94125 0.93994 1.44721 1.14714 1.44801 1.29733 1.19333 0.92673 1.14835 1.09334 0.90524 1.25461 1.01257 1.01139 0.97418 1.69797 1.33169 1.38981 1.17172 0.85218 0.79417 0.78286 0.76779 1.20799 1.21772 1.20835 1.21766 0.98603 0.88492 0.89104 1.22952 0.97636 0.95395 0.96717 0.87776 1.22153 0.98069 0.98782 0.80978 1.48556 1.62723 1.07343 1.15098 1.19753 0.77069 0.83255 0.85318 1.90638 1.50826 1.86131 1.19145 1.22274 1.05656 0.91011 1.00899 0.84363 1.23233 0.89450 1.00697 1.03632 1.20988 1.01241 0.88447 0.98936 0.87193 1.19159 0.96315 0.94551 0.96531 1.21186 0.96985 0.95505 1.00741 1.21417 1.00371 0.96432 0.95978 1.21515 0.95119 1.00614 0.97371 1.21454 0.97959 0.94634 1.00074 1.21297 0.99974 0.97738 0.95512 1.22077 0.98315 0.82985 0.96288 0.91550 0.91379 0.91993 0.93972 0.95492 0.94151 0.99438 0.88051 0.88530 0.92925 0.84961 0.88574 0.85858 0.84125 0.83868 0.83978 0.84758 0.93452 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.52 71.98 0.61 -2.39 16 2 C -0.08 -2.54 1.10 -50.91 -0.06 -2.59 16 3 C 0.14 5.59 6.21 86.51 0.54 6.13 16 4 N -0.62 -30.25 3.39 -695.30 -2.36 -32.61 16 5 C -0.23 -12.62 10.34 84.03 0.87 -11.75 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 8 N -0.94 -52.94 10.08 21.65 0.22 -52.72 16 9 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.15 6.67 5.56 86.51 0.48 7.15 16 14 C -0.11 -3.68 3.68 -9.63 -0.04 -3.71 16 15 H 0.10 3.08 7.88 -2.39 -0.02 3.07 16 16 C 0.12 4.03 6.30 86.51 0.55 4.58 16 17 N -0.61 -20.29 3.32 -814.50 -2.70 -22.99 16 18 C 0.56 18.33 7.66 87.66 0.67 19.01 16 19 O -0.59 -22.87 16.49 -3.04 -0.05 -22.92 16 20 C -0.18 -4.48 5.19 -11.54 -0.06 -4.54 16 21 H 0.14 3.07 7.02 -2.38 -0.02 3.06 16 22 C -0.13 -2.88 9.56 30.60 0.29 -2.59 16 23 C -0.08 -1.79 5.55 -11.54 -0.06 -1.85 16 24 H 0.11 2.87 7.67 -2.39 -0.02 2.85 16 25 C -0.07 -1.34 5.61 -19.86 -0.11 -1.46 16 26 C -0.13 -2.43 9.74 22.27 0.22 -2.22 16 27 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 29 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 30 C -0.13 -2.26 9.30 22.27 0.21 -2.05 16 31 C 0.13 4.37 6.13 86.62 0.53 4.90 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 36 H 0.03 1.06 7.90 -2.39 -0.02 1.04 16 37 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.10 5.23 4.81 -2.38 -0.01 5.21 16 40 H 0.10 2.56 6.82 -2.39 -0.02 2.54 16 41 H 0.05 2.09 7.39 -2.39 -0.02 2.07 16 42 H 0.13 2.20 6.18 -2.38 -0.01 2.18 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 47 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 48 H 0.13 2.01 6.02 -2.91 -0.02 2.00 16 49 H 0.05 1.86 7.41 -2.39 -0.02 1.84 16 50 H 0.08 2.55 7.62 -2.39 -0.02 2.53 16 Total: -1.00 -66.38 393.54 3.84 -62.53 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.93 Total: 23.34 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.77 Total: -1.20 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.84 Total: -108.32 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.38 3.84 -62.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092213366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.956 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds