Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53783 * 111.85749 * 2 1 4 4 N 1.47210 * 106.37983 * 140.61226 * 3 2 1 5 5 C 1.36932 * 126.70658 * 148.72696 * 4 3 2 6 6 H 1.08001 * 119.99796 * 346.02273 * 5 4 3 7 7 C 1.38812 * 120.00413 * 166.02760 * 5 4 3 8 8 N 1.31620 * 120.00226 * 159.07604 * 7 5 4 9 9 Si 1.86798 * 119.99862 * 339.08135 * 7 5 4 10 10 H 1.48495 * 109.47494 * 88.40224 * 9 7 5 11 11 H 1.48498 * 109.47182 * 208.40750 * 9 7 5 12 12 H 1.48507 * 109.47269 * 328.40282 * 9 7 5 13 13 C 1.46515 * 106.96835 * 329.54780 * 4 3 2 14 14 C 1.53782 * 106.72973 * 29.90654 * 13 4 3 15 15 H 1.08999 * 112.60525 * 220.35768 * 14 13 4 16 16 C 1.53784 * 109.34951 * 95.35689 * 14 13 4 17 17 N 1.47210 * 106.42686 * 228.49493 * 16 14 13 18 18 C 1.34778 * 126.70191 * 211.31208 * 17 16 14 19 19 O 1.21554 * 119.99864 * 356.90592 * 18 17 16 20 20 C 1.47842 * 120.00308 * 176.89929 * 18 17 16 21 21 C 1.39599 * 120.14249 * 21.98822 * 20 18 17 22 22 C 1.37940 * 119.85316 * 179.74339 * 21 20 18 23 23 C 1.38379 * 120.14444 * 0.53383 * 22 21 20 24 24 C 1.38341 * 120.29204 * 359.74085 * 23 22 21 25 25 C 1.50700 * 119.92548 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.49908 * 8.73052 * 25 24 23 27 27 C 1.52998 * 117.49999 * 300.06917 * 25 24 23 28 28 C 1.37974 * 120.14525 * 359.97438 * 24 23 22 29 29 C 1.47350 * 106.52622 * 31.26986 * 17 16 14 30 30 H 1.08997 * 109.47544 * 302.06521 * 1 2 3 31 31 H 1.09000 * 109.47178 * 62.06623 * 1 2 3 32 32 H 1.09004 * 109.46774 * 182.06105 * 1 2 3 33 33 H 1.09000 * 110.07238 * 259.84128 * 3 2 1 34 34 H 1.09002 * 110.07367 * 21.32231 * 3 2 1 35 35 H 0.97000 * 120.00174 * 180.02562 * 8 7 5 36 36 H 1.08994 * 108.73425 * 271.19812 * 13 4 3 37 37 H 1.09001 * 111.06802 * 149.89383 * 13 4 3 38 38 H 1.09003 * 110.07056 * 347.74561 * 16 14 13 39 39 H 1.08998 * 110.07879 * 109.23390 * 16 14 13 40 40 H 1.08002 * 120.07026 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.92623 * 180.25922 * 22 21 20 42 42 H 1.07998 * 119.85207 * 179.72024 * 23 22 21 43 43 H 1.08997 * 115.54691 * 154.39684 * 25 24 23 44 44 H 1.09002 * 117.50019 * 359.97438 * 26 25 24 45 45 H 1.08997 * 117.49759 * 145.01783 * 26 25 24 46 46 H 1.09005 * 117.49506 * 214.97889 * 27 25 24 47 47 H 1.08994 * 117.49877 * 359.97438 * 27 25 24 48 48 H 1.07996 * 120.07726 * 180.02562 * 28 24 23 49 49 H 1.08998 * 110.06352 * 209.49599 * 29 17 16 50 50 H 1.09006 * 110.11629 * 87.99566 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 3.2702 1.4062 0.8962 5 6 4.4003 2.1714 0.7862 6 1 4.6021 2.7081 -0.1291 7 6 5.2868 2.2575 1.8509 8 7 6.5330 2.6255 1.6416 9 14 4.7110 1.8507 3.5808 10 1 4.8853 0.3976 3.8317 11 1 5.5131 2.6226 4.5637 12 1 3.2767 2.2089 3.7222 13 6 3.0039 0.3941 1.9217 14 6 2.1091 -0.6727 1.2689 15 1 1.3241 -1.0270 1.9369 16 6 2.9854 -1.8263 0.7528 17 7 2.5542 -2.0902 -0.6298 18 6 2.5692 -3.2787 -1.2653 19 8 3.0213 -4.2600 -0.7084 20 6 2.0356 -3.3889 -2.6397 21 6 1.9445 -2.2553 -3.4493 22 6 1.4506 -2.3659 -4.7325 23 6 1.0357 -3.5951 -5.2139 24 6 1.1181 -4.7214 -4.4148 25 6 0.6633 -6.0558 -4.9473 26 6 0.3150 -6.1414 -6.4346 27 6 -0.7976 -6.1815 -5.3841 28 6 1.6155 -4.6255 -3.1314 29 6 2.1026 -0.8006 -1.1814 30 1 -0.3634 0.5455 0.8708 31 1 -0.3633 0.4814 -0.9079 32 1 -0.3633 -1.0271 0.0370 33 1 2.4094 1.7073 -1.0077 34 1 1.3567 2.1296 0.3723 35 1 7.1526 2.6853 2.3856 36 1 2.4783 0.8664 2.7515 37 1 3.9302 -0.0594 2.2744 38 1 4.0354 -1.5342 0.7679 39 1 2.8355 -2.7140 1.3673 40 1 2.2642 -1.2946 -3.0733 41 1 1.3835 -1.4903 -5.3613 42 1 0.6456 -3.6754 -6.2177 43 1 1.1283 -6.9282 -4.4882 44 1 0.4144 -5.2325 -7.0280 45 1 0.5505 -7.0704 -6.9539 46 1 -1.2936 -7.1369 -5.2127 47 1 -1.4299 -5.2992 -5.2859 48 1 1.6797 -5.5056 -2.5087 49 1 1.3293 -0.9651 -1.9317 50 1 2.9440 -0.2663 -1.6227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092307989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 66.988283 kcal Electronic energy + Delta-G solvation = -30015.183984 eV Core-core repulsion = 26202.435475 eV Total energy + Delta-G solvation = -3812.748509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.85130 -39.72642 -38.39717 -36.80237 -35.28997 -32.86956 -31.79718 -31.30312 -31.14487 -29.93490 -26.85130 -26.11560 -25.89399 -24.34214 -23.30350 -22.71846 -22.16908 -21.12385 -20.75010 -19.45438 -18.92200 -17.41389 -16.71020 -16.66038 -16.06643 -15.82271 -15.68742 -15.05288 -14.87461 -14.66616 -14.29185 -13.96922 -13.84981 -13.69683 -13.50324 -13.01033 -12.89117 -12.75968 -12.61251 -12.42019 -12.33577 -12.01389 -11.91962 -11.74888 -11.51918 -11.34241 -11.26986 -11.06073 -10.92619 -10.80542 -10.76937 -10.49053 -10.32957 -9.99670 -9.93748 -9.81632 -9.39364 -9.14838 -8.83369 -8.78666 -8.50961 -7.14881 -5.96936 -3.27912 0.74488 1.12203 2.77985 3.03905 3.31156 3.42615 3.44796 3.47165 3.80582 4.19242 4.37633 4.50102 4.51398 4.56494 4.60253 4.69394 4.74480 4.80828 4.85708 4.95367 5.08500 5.11803 5.26187 5.30114 5.34090 5.39373 5.45087 5.49413 5.51194 5.56805 5.61838 5.66983 5.69152 5.72916 5.81420 5.89409 5.99209 6.02366 6.10644 6.13031 6.18076 6.24261 6.27859 6.32887 6.39270 6.43138 6.60990 6.62016 6.63438 6.69482 7.60526 7.64604 8.21790 8.26964 8.77114 9.64226 10.12664 11.18702 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.002696 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.634953 B =10383.862151 C =10503.009985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C 0.148 3.852 4 N -0.602 5.602 5 C -0.241 4.241 6 H 0.095 0.905 7 C 0.020 3.980 8 N -0.909 5.909 9 Si 0.882 3.118 10 H -0.287 1.287 11 H -0.303 1.303 12 H -0.271 1.271 13 C 0.112 3.888 14 C -0.106 4.106 15 H 0.088 0.912 16 C 0.115 3.885 17 N -0.604 5.604 18 C 0.572 3.428 19 O -0.544 6.544 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.063 4.063 25 C -0.117 4.117 26 C -0.177 4.177 27 C -0.169 4.169 28 C -0.057 4.057 29 C 0.101 3.899 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.133 0.867 49 H 0.087 0.913 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.502 -13.320 -13.897 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C 0.022 3.978 4 N -0.327 5.327 5 C -0.368 4.368 6 H 0.112 0.888 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.713 3.287 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.196 1.196 13 C -0.014 4.014 14 C -0.127 4.127 15 H 0.106 0.894 16 C -0.007 4.007 17 N -0.335 5.335 18 C 0.362 3.638 19 O -0.423 6.423 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.063 4.063 25 C -0.135 4.135 26 C -0.213 4.213 27 C -0.206 4.206 28 C -0.076 4.076 29 C -0.021 4.021 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.150 0.850 49 H 0.105 0.895 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.978 -13.790 -13.577 25.096 hybrid contribution -0.098 -0.104 1.097 1.107 sum -16.076 -13.894 -12.480 24.642 Atomic orbital electron populations 1.21692 0.93147 1.01453 1.02115 1.22176 0.95398 0.97311 0.94127 1.21357 0.89431 0.91737 0.95305 1.44595 1.16853 1.41228 1.30014 1.18628 0.94560 1.23678 0.99910 0.88775 1.24890 0.95404 0.99647 0.97887 1.69820 1.02619 1.51492 1.31358 0.87046 0.78346 0.77086 0.86266 1.21441 1.23109 1.19612 1.21753 0.97434 0.89471 0.92766 1.22852 0.97672 0.95417 0.96760 0.89359 1.22188 0.99303 0.97778 0.81402 1.48425 1.62844 1.07382 1.14890 1.17904 0.78883 0.81587 0.85404 1.90765 1.47390 1.36318 1.67804 1.19856 1.03383 0.94603 0.94347 1.22158 0.97458 0.98929 0.94081 1.21117 0.99591 0.97718 0.95576 1.21221 0.98877 0.92249 0.99586 1.19038 0.99823 0.93685 0.93732 1.21022 0.98866 0.96020 0.97617 1.23087 1.03345 1.03616 0.91294 1.23049 0.90839 1.03529 1.03206 1.20979 0.95293 0.96754 0.94552 1.22793 0.99445 0.83390 0.96487 0.92031 0.92295 0.92832 0.92799 0.95143 0.92672 0.95104 0.91554 0.90262 0.90700 0.83431 0.85246 0.85700 0.86740 0.88304 0.88359 0.88390 0.88512 0.84960 0.89506 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.43 37.16 0.31 -1.15 16 2 C -0.09 -1.28 1.09 -152.72 -0.17 -1.45 16 3 C 0.15 2.62 6.25 -3.25 -0.02 2.60 16 4 N -0.60 -13.65 3.23 -171.70 -0.56 -14.21 16 5 C -0.24 -6.55 10.67 -15.06 -0.16 -6.71 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.02 0.57 5.45 -17.43 -0.09 0.48 16 8 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 9 Si 0.88 22.13 24.38 -169.99 -4.14 17.99 16 10 H -0.29 -6.99 6.47 56.52 0.37 -6.62 16 11 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 12 H -0.27 -6.58 6.12 56.52 0.35 -6.24 16 13 C 0.11 2.32 4.05 -3.63 -0.01 2.30 16 14 C -0.11 -1.75 3.69 -88.83 -0.33 -2.07 16 15 H 0.09 1.28 7.88 -51.93 -0.41 0.87 16 16 C 0.12 1.98 6.45 -3.25 -0.02 1.96 16 17 N -0.60 -9.63 3.32 -172.59 -0.57 -10.21 16 18 C 0.57 9.51 7.72 -12.33 -0.10 9.41 16 19 O -0.54 -10.71 16.82 5.32 0.09 -10.62 16 20 C -0.12 -1.62 5.79 -104.97 -0.61 -2.23 16 21 C -0.11 -1.24 8.02 -39.18 -0.31 -1.56 16 22 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 23 C -0.10 -0.92 9.29 -39.49 -0.37 -1.28 16 24 C -0.06 -0.64 5.61 -104.68 -0.59 -1.22 16 25 C -0.12 -0.95 6.03 -91.77 -0.55 -1.50 16 26 C -0.18 -1.12 9.86 -26.69 -0.26 -1.38 16 27 C -0.17 -1.12 10.17 -26.69 -0.27 -1.39 16 28 C -0.06 -0.70 9.28 -39.19 -0.36 -1.07 16 29 C 0.10 1.41 4.30 -3.18 -0.01 1.39 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 34 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.03 0.66 6.03 -51.93 -0.31 0.35 16 37 H 0.07 1.51 4.89 -51.93 -0.25 1.25 16 38 H 0.08 1.55 7.39 -51.93 -0.38 1.16 16 39 H 0.07 1.25 7.95 -51.93 -0.41 0.83 16 40 H 0.15 1.63 4.29 -52.49 -0.23 1.40 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.85 6.01 -52.49 -0.32 0.54 16 43 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.57 6.17 -51.93 -0.32 0.25 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.13 1.64 7.81 -52.49 -0.41 1.23 16 49 H 0.09 0.99 5.02 -51.93 -0.26 0.73 16 50 H 0.08 1.23 7.10 -51.93 -0.37 0.86 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -32.62 380.99 -10.50 -43.12 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.51 Total: 1.49 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -4.33 Total: -6.41 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.35 Total: -51.30 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.62 -10.50 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092307989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.104 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds