Wall clock time and date at job start Sat Apr 11 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53783 * 111.85749 * 2 1 4 4 N 1.47210 * 106.37983 * 140.61226 * 3 2 1 5 5 C 1.36932 * 126.70658 * 148.72696 * 4 3 2 6 6 H 1.08001 * 119.99796 * 346.02273 * 5 4 3 7 7 C 1.38812 * 120.00413 * 166.02760 * 5 4 3 8 8 N 1.31620 * 120.00226 * 159.07604 * 7 5 4 9 9 Si 1.86798 * 119.99862 * 339.08135 * 7 5 4 10 10 H 1.48495 * 109.47494 * 88.40224 * 9 7 5 11 11 H 1.48498 * 109.47182 * 208.40750 * 9 7 5 12 12 H 1.48507 * 109.47269 * 328.40282 * 9 7 5 13 13 C 1.46515 * 106.96835 * 329.54780 * 4 3 2 14 14 C 1.53782 * 106.72973 * 29.90654 * 13 4 3 15 15 H 1.08999 * 112.60525 * 220.35768 * 14 13 4 16 16 C 1.53784 * 109.34951 * 95.35689 * 14 13 4 17 17 N 1.47210 * 106.42686 * 228.49493 * 16 14 13 18 18 C 1.34778 * 126.70191 * 211.31208 * 17 16 14 19 19 O 1.21554 * 119.99864 * 356.90592 * 18 17 16 20 20 C 1.47842 * 120.00308 * 176.89929 * 18 17 16 21 21 C 1.39599 * 120.14249 * 21.98822 * 20 18 17 22 22 C 1.37940 * 119.85316 * 179.74339 * 21 20 18 23 23 C 1.38379 * 120.14444 * 0.53383 * 22 21 20 24 24 C 1.38341 * 120.29204 * 359.74085 * 23 22 21 25 25 C 1.50700 * 119.92548 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.49908 * 8.73052 * 25 24 23 27 27 C 1.52998 * 117.49999 * 300.06917 * 25 24 23 28 28 C 1.37974 * 120.14525 * 359.97438 * 24 23 22 29 29 C 1.47350 * 106.52622 * 31.26986 * 17 16 14 30 30 H 1.08997 * 109.47544 * 302.06521 * 1 2 3 31 31 H 1.09000 * 109.47178 * 62.06623 * 1 2 3 32 32 H 1.09004 * 109.46774 * 182.06105 * 1 2 3 33 33 H 1.09000 * 110.07238 * 259.84128 * 3 2 1 34 34 H 1.09002 * 110.07367 * 21.32231 * 3 2 1 35 35 H 0.97000 * 120.00174 * 180.02562 * 8 7 5 36 36 H 1.08994 * 108.73425 * 271.19812 * 13 4 3 37 37 H 1.09001 * 111.06802 * 149.89383 * 13 4 3 38 38 H 1.09003 * 110.07056 * 347.74561 * 16 14 13 39 39 H 1.08998 * 110.07879 * 109.23390 * 16 14 13 40 40 H 1.08002 * 120.07026 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.92623 * 180.25922 * 22 21 20 42 42 H 1.07998 * 119.85207 * 179.72024 * 23 22 21 43 43 H 1.08997 * 115.54691 * 154.39684 * 25 24 23 44 44 H 1.09002 * 117.50019 * 359.97438 * 26 25 24 45 45 H 1.08997 * 117.49759 * 145.01783 * 26 25 24 46 46 H 1.09005 * 117.49506 * 214.97889 * 27 25 24 47 47 H 1.08994 * 117.49877 * 359.97438 * 27 25 24 48 48 H 1.07996 * 120.07726 * 180.02562 * 28 24 23 49 49 H 1.08998 * 110.06352 * 209.49599 * 29 17 16 50 50 H 1.09006 * 110.11629 * 87.99566 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 3.2702 1.4062 0.8962 5 6 4.4003 2.1714 0.7862 6 1 4.6021 2.7081 -0.1291 7 6 5.2868 2.2575 1.8509 8 7 6.5330 2.6255 1.6416 9 14 4.7110 1.8507 3.5808 10 1 4.8853 0.3976 3.8317 11 1 5.5131 2.6226 4.5637 12 1 3.2767 2.2089 3.7222 13 6 3.0039 0.3941 1.9217 14 6 2.1091 -0.6727 1.2689 15 1 1.3241 -1.0270 1.9369 16 6 2.9854 -1.8263 0.7528 17 7 2.5542 -2.0902 -0.6298 18 6 2.5692 -3.2787 -1.2653 19 8 3.0213 -4.2600 -0.7084 20 6 2.0356 -3.3889 -2.6397 21 6 1.9445 -2.2553 -3.4493 22 6 1.4506 -2.3659 -4.7325 23 6 1.0357 -3.5951 -5.2139 24 6 1.1181 -4.7214 -4.4148 25 6 0.6633 -6.0558 -4.9473 26 6 0.3150 -6.1414 -6.4346 27 6 -0.7976 -6.1815 -5.3841 28 6 1.6155 -4.6255 -3.1314 29 6 2.1026 -0.8006 -1.1814 30 1 -0.3634 0.5455 0.8708 31 1 -0.3633 0.4814 -0.9079 32 1 -0.3633 -1.0271 0.0370 33 1 2.4094 1.7073 -1.0077 34 1 1.3567 2.1296 0.3723 35 1 7.1526 2.6853 2.3856 36 1 2.4783 0.8664 2.7515 37 1 3.9302 -0.0594 2.2744 38 1 4.0354 -1.5342 0.7679 39 1 2.8355 -2.7140 1.3673 40 1 2.2642 -1.2946 -3.0733 41 1 1.3835 -1.4903 -5.3613 42 1 0.6456 -3.6754 -6.2177 43 1 1.1283 -6.9282 -4.4882 44 1 0.4144 -5.2325 -7.0280 45 1 0.5505 -7.0704 -6.9539 46 1 -1.2936 -7.1369 -5.2127 47 1 -1.4299 -5.2992 -5.2859 48 1 1.6797 -5.5056 -2.5087 49 1 1.3293 -0.9651 -1.9317 50 1 2.9440 -0.2663 -1.6227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092307989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:25 Heat of formation + Delta-G solvation = 48.106244 kcal Electronic energy + Delta-G solvation = -30016.002771 eV Core-core repulsion = 26202.435475 eV Total energy + Delta-G solvation = -3813.567296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06612 -40.71981 -39.58365 -37.52906 -36.84736 -34.55473 -33.12942 -32.71250 -32.06408 -31.15866 -28.01339 -27.71461 -27.32862 -25.25307 -24.34402 -23.60879 -23.05399 -22.47997 -21.93121 -20.59066 -20.19677 -18.85806 -18.09897 -17.65876 -17.47876 -16.98870 -16.73051 -16.49011 -16.06749 -15.84754 -15.49215 -15.13959 -15.09501 -14.79688 -14.66509 -14.39636 -14.20458 -13.98852 -13.74780 -13.67623 -13.49793 -13.20974 -13.15430 -12.91220 -12.76333 -12.57104 -12.35767 -12.20312 -12.11942 -11.97758 -11.78274 -11.58837 -11.58086 -11.51658 -11.34606 -11.18051 -11.07102 -10.85289 -10.08219 -9.77217 -9.55937 -9.09898 -8.16445 -5.41897 -0.16758 0.31675 1.29029 1.37506 1.45311 1.67442 1.81167 2.40727 2.64310 3.03723 3.12576 3.18945 3.29653 3.43899 3.59060 3.61537 3.72917 3.92601 3.96550 4.04015 4.09860 4.14793 4.16225 4.20679 4.25141 4.33432 4.35042 4.51062 4.53295 4.62250 4.70481 4.77532 4.79844 4.81428 4.86082 4.86841 4.91568 5.00375 5.07057 5.07751 5.13219 5.16418 5.17414 5.26916 5.27447 5.35694 5.40924 5.45190 5.55467 5.65848 5.90003 6.10518 6.39427 6.74415 6.93817 7.54091 8.11719 9.02851 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.002696 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.634953 B =10383.862151 C =10503.009985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C 0.143 3.857 4 N -0.622 5.622 5 C -0.221 4.221 6 H 0.068 0.932 7 C -0.043 4.043 8 N -0.960 5.960 9 Si 0.940 3.060 10 H -0.281 1.281 11 H -0.313 1.313 12 H -0.254 1.254 13 C 0.108 3.892 14 C -0.096 4.096 15 H 0.118 0.882 16 C 0.116 3.884 17 N -0.604 5.604 18 C 0.568 3.432 19 O -0.587 6.587 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.094 4.094 24 C -0.060 4.060 25 C -0.141 4.141 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.073 4.073 29 C 0.104 3.896 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 -13.953 -16.153 29.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.078 4.078 3 C 0.018 3.982 4 N -0.347 5.347 5 C -0.350 4.350 6 H 0.086 0.914 7 C -0.237 4.237 8 N -0.607 5.607 9 Si 0.770 3.230 10 H -0.208 1.208 11 H -0.242 1.242 12 H -0.178 1.178 13 C -0.018 4.018 14 C -0.117 4.117 15 H 0.136 0.864 16 C -0.007 4.007 17 N -0.334 5.334 18 C 0.359 3.641 19 O -0.469 6.469 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.111 4.111 24 C -0.060 4.060 25 C -0.159 4.159 26 C -0.201 4.201 27 C -0.200 4.200 28 C -0.092 4.092 29 C -0.018 4.018 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.008 -14.427 -15.854 29.322 hybrid contribution 1.118 0.044 1.620 1.969 sum -18.890 -14.383 -14.233 27.682 Atomic orbital electron populations 1.21677 0.89777 1.02552 1.03704 1.22168 0.97755 0.94805 0.93102 1.21619 0.87957 0.94130 0.94494 1.44694 1.17231 1.41248 1.31482 1.18598 0.95591 1.22287 0.98502 0.91449 1.25520 0.95485 1.01178 1.01483 1.69951 1.03913 1.54845 1.32026 0.86090 0.78393 0.76918 0.81603 1.20820 1.24204 1.17824 1.21777 0.97146 0.90068 0.92766 1.22805 0.97312 0.93690 0.97846 0.86400 1.22030 0.97760 0.98239 0.82693 1.48470 1.62541 1.08075 1.14362 1.18509 0.78096 0.80979 0.86467 1.90727 1.49362 1.37716 1.69103 1.19699 1.05454 0.96075 0.93013 1.22197 0.97985 0.98132 0.94937 1.21475 0.97899 0.99046 0.94751 1.21599 0.97484 0.91519 1.00544 1.19258 0.98756 0.95206 0.92770 1.21051 1.00460 0.94929 0.99424 1.23210 1.02058 1.04680 0.90165 1.23126 0.90036 1.04173 1.02664 1.20988 0.96594 0.95956 0.95701 1.22898 0.99852 0.82101 0.96939 0.91469 0.89895 0.91861 0.92376 0.93641 0.93125 0.94824 0.94178 0.93700 0.90574 0.83246 0.82112 0.82716 0.87205 0.87227 0.87313 0.87488 0.88248 0.86364 0.86160 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.43 71.98 0.61 -1.61 16 2 C -0.08 -2.03 1.09 -51.02 -0.06 -2.08 16 3 C 0.14 4.79 6.25 86.51 0.54 5.33 16 4 N -0.62 -28.07 3.23 -697.12 -2.25 -30.32 16 5 C -0.22 -12.33 10.67 84.03 0.90 -11.44 16 6 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 7 C -0.04 -2.52 5.45 84.86 0.46 -2.06 16 8 N -0.96 -60.97 13.97 21.65 0.30 -60.67 16 9 Si 0.94 46.91 24.38 68.60 1.67 48.58 16 10 H -0.28 -13.59 6.47 99.48 0.64 -12.94 16 11 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 12 H -0.25 -11.79 6.12 99.48 0.61 -11.18 16 13 C 0.11 4.41 4.05 86.64 0.35 4.76 16 14 C -0.10 -3.01 3.69 -9.63 -0.04 -3.04 16 15 H 0.12 3.05 7.88 -2.39 -0.02 3.03 16 16 C 0.12 4.02 6.45 86.51 0.56 4.58 16 17 N -0.60 -19.17 3.32 -818.21 -2.72 -21.89 16 18 C 0.57 19.18 7.72 86.79 0.67 19.85 16 19 O -0.59 -24.16 16.82 -3.88 -0.07 -24.22 16 20 C -0.14 -3.72 5.79 -20.09 -0.12 -3.84 16 21 C -0.11 -2.37 8.02 22.53 0.18 -2.19 16 22 C -0.11 -1.72 10.03 22.23 0.22 -1.49 16 23 C -0.09 -1.35 9.29 22.33 0.21 -1.14 16 24 C -0.06 -1.09 5.61 -19.90 -0.11 -1.20 16 25 C -0.14 -1.99 6.03 -11.54 -0.07 -2.06 16 26 C -0.16 -1.52 9.86 30.62 0.30 -1.22 16 27 C -0.16 -1.68 10.17 30.62 0.31 -1.37 16 28 C -0.07 -1.79 9.28 22.53 0.21 -1.58 16 29 C 0.10 2.70 4.30 86.48 0.37 3.07 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 1.89 7.56 -2.39 -0.02 1.87 16 34 H 0.05 1.44 7.87 -2.39 -0.02 1.42 16 35 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.03 1.38 6.03 -2.39 -0.01 1.36 16 37 H 0.04 1.85 4.89 -2.39 -0.01 1.84 16 38 H 0.04 1.85 7.39 -2.39 -0.02 1.83 16 39 H 0.08 2.59 7.95 -2.39 -0.02 2.57 16 40 H 0.15 2.96 4.29 -2.91 -0.01 2.95 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.16 1.31 6.01 -2.91 -0.02 1.29 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.11 0.77 6.17 -2.39 -0.01 0.76 16 45 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.12 3.11 7.81 -2.91 -0.02 3.08 16 49 H 0.12 2.37 5.02 -2.39 -0.01 2.35 16 50 H 0.07 1.97 7.10 -2.38 -0.02 1.95 16 Total: -1.00 -75.43 380.99 3.23 -72.20 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.79 Total: 15.07 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.50 Total: 1.25 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.67 Total: -112.87 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.22 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.67 Total: 48.58 kcal Total: -75.43 3.23 -72.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092307989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.302 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds