Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53783 * 111.85895 * 2 1 4 4 N 1.47213 * 106.38019 * 104.03810 * 3 2 1 5 5 C 1.36936 * 126.70708 * 211.27503 * 4 3 2 6 6 H 1.07999 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00618 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99327 * 359.97438 * 7 5 4 9 9 Si 1.86788 * 120.00275 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47405 * 120.00414 * 9 7 5 12 12 H 1.48504 * 109.47179 * 240.00178 * 9 7 5 13 13 C 1.47219 * 106.59647 * 31.27200 * 4 3 2 14 14 C 1.54853 * 111.96121 * 118.99576 * 2 1 3 15 15 H 1.09004 * 111.96120 * 359.09121 * 14 2 1 16 16 C 1.54077 * 105.27824 * 121.58535 * 14 2 1 17 17 N 1.47210 * 106.22667 * 19.07395 * 16 14 2 18 18 C 1.34776 * 126.70226 * 148.66920 * 17 16 14 19 19 O 1.21554 * 120.00120 * 185.01355 * 18 17 16 20 20 C 1.47842 * 120.00253 * 5.00910 * 18 17 16 21 21 C 1.39491 * 120.03746 * 35.43403 * 20 18 17 22 22 C 1.37937 * 119.76500 * 180.32334 * 21 20 18 23 23 C 1.38257 * 120.09802 * 359.91638 * 22 21 20 24 24 C 1.38617 * 120.52732 * 0.07846 * 23 22 21 25 25 C 1.37980 * 119.92876 * 359.97080 * 24 23 22 26 26 C 1.51354 * 109.82686 * 180.02562 * 25 24 23 27 27 C 1.54353 * 105.15212 * 17.16449 * 26 25 24 28 28 C 1.51389 * 130.30886 * 179.97438 * 24 23 22 29 29 C 1.47220 * 106.59569 * 328.41010 * 17 16 14 30 30 H 1.08998 * 109.47202 * 182.04793 * 1 2 3 31 31 H 1.09001 * 109.47673 * 302.05035 * 1 2 3 32 32 H 1.08998 * 109.46995 * 62.04866 * 1 2 3 33 33 H 1.08999 * 110.07476 * 223.26656 * 3 2 1 34 34 H 1.09000 * 110.07125 * 344.75689 * 3 2 1 35 35 H 0.97003 * 119.99959 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.07293 * 87.95257 * 13 4 3 37 37 H 1.09000 * 110.07822 * 209.49772 * 13 4 3 38 38 H 1.09006 * 110.21440 * 259.86092 * 16 14 2 39 39 H 1.09001 * 110.08395 * 138.21962 * 16 14 2 40 40 H 1.08003 * 120.12318 * 0.28629 * 21 20 18 41 41 H 1.07999 * 119.95085 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.73501 * 180.02562 * 23 22 21 43 43 H 1.09003 * 110.30381 * 136.08546 * 26 25 24 44 44 H 1.08999 * 110.30473 * 258.15009 * 26 25 24 45 45 H 1.09001 * 110.82535 * 91.91332 * 27 26 25 46 46 H 1.08993 * 110.83154 * 215.47984 * 27 26 25 47 47 H 1.09000 * 110.30637 * 43.88914 * 28 24 23 48 48 H 1.09004 * 110.38829 * 281.78260 * 28 24 23 49 49 H 1.08994 * 110.07258 * 150.74155 * 29 17 16 50 50 H 1.08996 * 110.06889 * 272.22587 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 2.5751 1.6850 1.3702 5 6 2.6002 2.8936 2.0136 6 1 2.2481 3.7812 1.5091 7 6 3.0773 2.9777 3.3144 8 7 3.5050 1.8956 3.9296 9 14 3.1123 4.6264 4.1916 10 1 2.5804 5.6789 3.2890 11 1 2.2736 4.5541 5.4150 12 1 4.5101 4.9570 4.5686 13 6 3.0153 0.3896 1.9138 14 6 2.1091 -0.6962 1.2561 15 1 1.3240 -1.0487 1.9252 16 6 2.9829 -1.8450 0.7171 17 7 3.2702 -1.5183 -0.6893 18 6 4.3824 -1.8388 -1.3797 19 8 4.5333 -1.4282 -2.5137 20 6 5.4191 -2.6897 -0.7577 21 6 5.0503 -3.7195 0.1080 22 6 6.0225 -4.5058 0.6904 23 6 7.3576 -4.2747 0.4156 24 6 7.7333 -3.2537 -0.4434 25 6 6.7703 -2.4596 -1.0316 26 6 7.4292 -1.4262 -1.9196 27 6 8.8626 -1.9493 -2.1523 28 6 9.1084 -2.8095 -0.8945 29 6 2.1026 -0.7786 -1.1961 30 1 -0.3633 -1.0270 0.0367 31 1 -0.3634 0.5453 0.8710 32 1 -0.3633 0.4817 -0.9078 33 1 2.9337 1.4969 -0.7017 34 1 1.3250 2.1422 -0.2692 35 1 3.8388 1.9543 4.8385 36 1 4.0615 0.2148 1.6631 37 1 2.8814 0.3728 2.9955 38 1 2.4429 -2.7899 0.7789 39 1 3.9117 -1.9066 1.2842 40 1 4.0072 -3.9003 0.3219 41 1 5.7403 -5.3036 1.3614 42 1 8.1140 -4.8942 0.8745 43 1 6.8968 -1.3473 -2.8675 44 1 7.4548 -0.4583 -1.4190 45 1 8.9110 -2.5590 -3.0546 46 1 9.5730 -1.1242 -2.2023 47 1 9.7230 -3.6748 -1.1426 48 1 9.5894 -2.2152 -0.1175 49 1 2.4096 -0.0869 -1.9805 50 1 1.3576 -1.4744 -1.5818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092315035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 20.828949 kcal Electronic energy + Delta-G solvation = -30700.517494 eV Core-core repulsion = 26885.767366 eV Total energy + Delta-G solvation = -3814.750128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.72679 -39.67882 -37.93713 -35.79476 -34.88583 -32.90402 -31.57299 -30.72657 -29.97612 -29.09000 -27.65524 -26.34944 -25.81895 -25.09085 -23.55221 -22.24864 -21.23943 -21.01596 -20.21469 -19.22293 -18.58913 -16.94960 -16.57833 -16.26971 -15.73847 -15.46878 -15.35393 -15.13756 -14.76426 -14.05350 -13.92769 -13.72930 -13.45740 -13.34844 -13.11430 -12.87272 -12.72261 -12.58579 -12.52643 -12.06718 -11.84738 -11.73438 -11.61590 -11.45993 -11.33892 -11.24916 -11.16929 -10.98825 -10.90877 -10.87876 -10.77572 -10.12244 -10.08119 -9.97902 -9.77149 -9.60752 -9.42813 -8.83855 -8.73865 -8.56343 -8.37069 -6.88980 -5.66158 -3.11035 0.96696 1.31268 2.91750 3.20012 3.37723 3.43560 3.45787 3.79169 4.30275 4.45496 4.50083 4.61605 4.86432 4.93759 4.95864 4.99859 5.03337 5.14490 5.23637 5.40045 5.42067 5.47029 5.51371 5.60540 5.62838 5.67206 5.68685 5.77123 5.77982 5.85310 5.90956 5.98899 6.00022 6.05133 6.10937 6.15305 6.18711 6.28030 6.30288 6.35358 6.39090 6.43094 6.52143 6.56377 6.65185 6.80653 6.86009 6.94785 7.44214 7.58986 7.76817 7.81426 8.35473 8.37323 9.19095 9.79750 10.47907 11.34859 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.003717 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.439670 B = 7530.515358 C = 8554.415357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.217 4.217 6 H 0.079 0.921 7 C -0.012 4.012 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.291 1.291 13 C 0.147 3.853 14 C -0.119 4.119 15 H 0.089 0.911 16 C 0.108 3.892 17 N -0.604 5.604 18 C 0.577 3.423 19 O -0.542 6.542 20 C -0.111 4.111 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.087 4.087 24 C -0.108 4.108 25 C -0.037 4.037 26 C -0.091 4.091 27 C -0.119 4.119 28 C -0.080 4.080 29 C 0.119 3.881 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.043 0.957 35 H 0.252 0.748 36 H 0.008 0.992 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -14.225 -7.623 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.090 4.090 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.345 4.345 6 H 0.097 0.903 7 C -0.207 4.207 8 N -0.571 5.571 9 Si 0.746 3.254 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.218 1.218 13 C 0.021 3.979 14 C -0.139 4.139 15 H 0.107 0.893 16 C -0.015 4.015 17 N -0.336 5.336 18 C 0.367 3.633 19 O -0.421 6.421 20 C -0.114 4.114 21 C -0.106 4.106 22 C -0.146 4.146 23 C -0.106 4.106 24 C -0.109 4.109 25 C -0.038 4.038 26 C -0.127 4.127 27 C -0.157 4.157 28 C -0.117 4.117 29 C -0.003 4.003 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.494 -13.870 -8.075 16.667 hybrid contribution -0.044 0.727 0.614 0.952 sum 4.450 -13.143 -7.461 15.755 Atomic orbital electron populations 1.21632 0.93272 1.00997 1.02054 1.22168 0.95530 0.97315 0.93974 1.21439 0.95774 0.92074 0.88898 1.44487 1.73186 1.04711 1.09422 1.19153 1.35210 0.84831 0.95282 0.90326 1.24760 1.01307 0.97600 0.97060 1.69610 1.48815 1.25807 1.12857 0.85981 0.77289 0.82670 0.79486 1.20525 1.21717 1.21766 1.22330 0.91957 0.81411 1.02194 1.23562 0.98365 0.95733 0.96264 0.89296 1.22366 1.00251 0.97581 0.81330 1.48335 1.17122 1.55152 1.12949 1.17945 0.80184 0.80022 0.85144 1.90727 1.77819 1.54917 1.18635 1.19420 0.92498 0.98655 1.00842 1.21366 1.00223 0.94423 0.94631 1.20949 0.92475 1.00341 1.00807 1.20765 0.96189 0.96703 0.96898 1.20578 0.95953 0.96246 0.98079 1.20524 0.91364 0.95981 0.95968 1.21177 0.94610 0.96979 0.99974 1.22308 0.96405 0.99406 0.97563 1.21053 0.93283 0.99628 0.97738 1.22093 0.86380 0.94832 0.97021 0.93142 0.91632 0.92930 0.96427 0.93909 0.93720 0.97442 0.86031 0.92129 0.90007 0.85028 0.85289 0.85985 0.89054 0.89899 0.90964 0.90430 0.90746 0.90047 0.90303 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.43 37.15 0.31 -1.45 16 2 C -0.09 -1.50 1.08 -152.72 -0.16 -1.67 16 3 C 0.14 3.08 6.37 -3.25 -0.02 3.05 16 4 N -0.60 -15.13 3.39 -169.74 -0.58 -15.70 16 5 C -0.22 -5.99 10.34 -15.06 -0.16 -6.15 16 6 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 7 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 8 N -0.92 -26.39 10.08 55.49 0.56 -25.83 16 9 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 C 0.15 3.47 5.76 -2.06 -0.01 3.46 16 14 C -0.12 -2.13 3.80 -87.49 -0.33 -2.46 16 15 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 16 C 0.11 1.66 4.60 -3.09 -0.01 1.65 16 17 N -0.60 -10.14 3.32 -172.51 -0.57 -10.72 16 18 C 0.58 10.33 7.46 -12.33 -0.09 10.24 16 19 O -0.54 -10.99 15.61 5.32 0.08 -10.91 16 20 C -0.11 -1.74 5.44 -104.93 -0.57 -2.32 16 21 C -0.09 -1.14 8.01 -39.23 -0.31 -1.46 16 22 C -0.13 -1.42 10.03 -39.68 -0.40 -1.82 16 23 C -0.09 -0.97 10.03 -39.43 -0.40 -1.37 16 24 C -0.11 -1.36 6.13 -104.24 -0.64 -2.00 16 25 C -0.04 -0.56 5.99 -103.82 -0.62 -1.18 16 26 C -0.09 -1.26 6.15 -26.85 -0.17 -1.42 16 27 C -0.12 -1.23 7.08 -25.31 -0.18 -1.41 16 28 C -0.08 -0.80 6.77 -26.84 -0.18 -0.98 16 29 C 0.12 1.93 5.99 -3.25 -0.02 1.91 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.41 7.38 -51.93 -0.38 0.02 16 34 H 0.04 0.88 7.82 -51.93 -0.41 0.47 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 36 H 0.01 0.20 7.52 -51.93 -0.39 -0.19 16 37 H 0.12 3.23 5.44 -51.93 -0.28 2.95 16 38 H 0.06 0.76 7.38 -51.93 -0.38 0.37 16 39 H 0.08 1.32 6.24 -51.93 -0.32 1.00 16 40 H 0.13 1.51 5.92 -52.48 -0.31 1.20 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.09 1.38 7.06 -51.93 -0.37 1.02 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 1.37 7.21 -51.93 -0.37 1.00 16 50 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -32.06 383.33 -11.62 -43.69 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.81 Total: 2.57 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -4.06 Total: -5.80 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.59 Total: -52.25 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.06 -11.62 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092315035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.516 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds