Wall clock time and date at job start Sat Apr 11 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53783 * 111.85895 * 2 1 4 4 N 1.47213 * 106.38019 * 104.03810 * 3 2 1 5 5 C 1.36936 * 126.70708 * 211.27503 * 4 3 2 6 6 H 1.07999 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00618 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99327 * 359.97438 * 7 5 4 9 9 Si 1.86788 * 120.00275 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47405 * 120.00414 * 9 7 5 12 12 H 1.48504 * 109.47179 * 240.00178 * 9 7 5 13 13 C 1.47219 * 106.59647 * 31.27200 * 4 3 2 14 14 C 1.54853 * 111.96121 * 118.99576 * 2 1 3 15 15 H 1.09004 * 111.96120 * 359.09121 * 14 2 1 16 16 C 1.54077 * 105.27824 * 121.58535 * 14 2 1 17 17 N 1.47210 * 106.22667 * 19.07395 * 16 14 2 18 18 C 1.34776 * 126.70226 * 148.66920 * 17 16 14 19 19 O 1.21554 * 120.00120 * 185.01355 * 18 17 16 20 20 C 1.47842 * 120.00253 * 5.00910 * 18 17 16 21 21 C 1.39491 * 120.03746 * 35.43403 * 20 18 17 22 22 C 1.37937 * 119.76500 * 180.32334 * 21 20 18 23 23 C 1.38257 * 120.09802 * 359.91638 * 22 21 20 24 24 C 1.38617 * 120.52732 * 0.07846 * 23 22 21 25 25 C 1.37980 * 119.92876 * 359.97080 * 24 23 22 26 26 C 1.51354 * 109.82686 * 180.02562 * 25 24 23 27 27 C 1.54353 * 105.15212 * 17.16449 * 26 25 24 28 28 C 1.51389 * 130.30886 * 179.97438 * 24 23 22 29 29 C 1.47220 * 106.59569 * 328.41010 * 17 16 14 30 30 H 1.08998 * 109.47202 * 182.04793 * 1 2 3 31 31 H 1.09001 * 109.47673 * 302.05035 * 1 2 3 32 32 H 1.08998 * 109.46995 * 62.04866 * 1 2 3 33 33 H 1.08999 * 110.07476 * 223.26656 * 3 2 1 34 34 H 1.09000 * 110.07125 * 344.75689 * 3 2 1 35 35 H 0.97003 * 119.99959 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.07293 * 87.95257 * 13 4 3 37 37 H 1.09000 * 110.07822 * 209.49772 * 13 4 3 38 38 H 1.09006 * 110.21440 * 259.86092 * 16 14 2 39 39 H 1.09001 * 110.08395 * 138.21962 * 16 14 2 40 40 H 1.08003 * 120.12318 * 0.28629 * 21 20 18 41 41 H 1.07999 * 119.95085 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.73501 * 180.02562 * 23 22 21 43 43 H 1.09003 * 110.30381 * 136.08546 * 26 25 24 44 44 H 1.08999 * 110.30473 * 258.15009 * 26 25 24 45 45 H 1.09001 * 110.82535 * 91.91332 * 27 26 25 46 46 H 1.08993 * 110.83154 * 215.47984 * 27 26 25 47 47 H 1.09000 * 110.30637 * 43.88914 * 28 24 23 48 48 H 1.09004 * 110.38829 * 281.78260 * 28 24 23 49 49 H 1.08994 * 110.07258 * 150.74155 * 29 17 16 50 50 H 1.08996 * 110.06889 * 272.22587 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 2.5751 1.6850 1.3702 5 6 2.6002 2.8936 2.0136 6 1 2.2481 3.7812 1.5091 7 6 3.0773 2.9777 3.3144 8 7 3.5050 1.8956 3.9296 9 14 3.1123 4.6264 4.1916 10 1 2.5804 5.6789 3.2890 11 1 2.2736 4.5541 5.4150 12 1 4.5101 4.9570 4.5686 13 6 3.0153 0.3896 1.9138 14 6 2.1091 -0.6962 1.2561 15 1 1.3240 -1.0487 1.9252 16 6 2.9829 -1.8450 0.7171 17 7 3.2702 -1.5183 -0.6893 18 6 4.3824 -1.8388 -1.3797 19 8 4.5333 -1.4282 -2.5137 20 6 5.4191 -2.6897 -0.7577 21 6 5.0503 -3.7195 0.1080 22 6 6.0225 -4.5058 0.6904 23 6 7.3576 -4.2747 0.4156 24 6 7.7333 -3.2537 -0.4434 25 6 6.7703 -2.4596 -1.0316 26 6 7.4292 -1.4262 -1.9196 27 6 8.8626 -1.9493 -2.1523 28 6 9.1084 -2.8095 -0.8945 29 6 2.1026 -0.7786 -1.1961 30 1 -0.3633 -1.0270 0.0367 31 1 -0.3634 0.5453 0.8710 32 1 -0.3633 0.4817 -0.9078 33 1 2.9337 1.4969 -0.7017 34 1 1.3250 2.1422 -0.2692 35 1 3.8388 1.9543 4.8385 36 1 4.0615 0.2148 1.6631 37 1 2.8814 0.3728 2.9955 38 1 2.4429 -2.7899 0.7789 39 1 3.9117 -1.9066 1.2842 40 1 4.0072 -3.9003 0.3219 41 1 5.7403 -5.3036 1.3614 42 1 8.1140 -4.8942 0.8745 43 1 6.8968 -1.3473 -2.8675 44 1 7.4548 -0.4583 -1.4190 45 1 8.9110 -2.5590 -3.0546 46 1 9.5730 -1.1242 -2.2023 47 1 9.7230 -3.6748 -1.1426 48 1 9.5894 -2.2152 -0.1175 49 1 2.4096 -0.0869 -1.9805 50 1 1.3576 -1.4744 -1.5818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092315035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:28 Heat of formation + Delta-G solvation = 3.541514 kcal Electronic energy + Delta-G solvation = -30701.267134 eV Core-core repulsion = 26885.767366 eV Total energy + Delta-G solvation = -3815.499767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95292 -40.88534 -39.34501 -36.88369 -36.44794 -34.53486 -32.84811 -32.24743 -31.61679 -30.01066 -28.67874 -27.91305 -27.29370 -26.71328 -24.86559 -23.63452 -22.25547 -22.13468 -21.79908 -20.53430 -19.96710 -18.83653 -17.93412 -17.41111 -16.98785 -16.68583 -16.62818 -16.41161 -16.17535 -15.56920 -15.50048 -15.12321 -14.91623 -14.70696 -14.18865 -14.04834 -13.85021 -13.82726 -13.58313 -13.47205 -13.38347 -13.25729 -13.01255 -12.82751 -12.73256 -12.65260 -12.35673 -12.31600 -12.19243 -12.08060 -11.97094 -11.85082 -11.79467 -11.55783 -11.46640 -11.14801 -10.93546 -10.81222 -9.90291 -9.66794 -9.50777 -8.95531 -7.77479 -5.26321 -0.06624 0.36176 1.44759 1.45524 1.55792 1.64412 1.97084 2.46419 2.76744 3.25433 3.29473 3.43288 3.48419 3.59279 3.70885 3.84173 3.91258 4.02264 4.09547 4.15162 4.19062 4.25495 4.28538 4.36657 4.48690 4.51195 4.59933 4.69247 4.70807 4.72710 4.74035 4.81361 4.85436 4.88382 4.90455 4.98527 5.02903 5.09460 5.13834 5.17557 5.19708 5.25077 5.30887 5.37032 5.42867 5.44110 5.50305 5.57548 5.58584 5.79606 5.95895 6.33542 6.44728 7.01436 7.08214 7.73593 8.41888 9.21046 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.003717 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.439670 B = 7530.515358 C = 8554.415357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C 0.142 3.858 4 N -0.617 5.617 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.062 4.062 8 N -0.945 5.945 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.294 1.294 13 C 0.152 3.848 14 C -0.108 4.108 15 H 0.111 0.889 16 C 0.115 3.885 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.581 6.581 20 C -0.142 4.142 21 C -0.092 4.092 22 C -0.123 4.123 23 C -0.084 4.084 24 C -0.114 4.114 25 C -0.073 4.073 26 C -0.094 4.094 27 C -0.112 4.112 28 C -0.076 4.076 29 C 0.121 3.879 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.067 0.933 33 H -0.007 1.007 34 H 0.047 0.953 35 H 0.249 0.751 36 H -0.030 1.030 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -16.819 -6.913 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C 0.016 3.984 4 N -0.340 5.340 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.255 4.255 8 N -0.595 5.595 9 Si 0.808 3.192 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.221 1.221 13 C 0.027 3.973 14 C -0.128 4.128 15 H 0.129 0.871 16 C -0.007 4.007 17 N -0.339 5.339 18 C 0.360 3.640 19 O -0.462 6.462 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.114 4.114 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.113 4.113 29 C -0.001 4.001 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.065 0.935 35 H 0.059 0.941 36 H -0.012 1.012 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.120 0.880 48 H 0.106 0.894 49 H 0.076 0.924 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.038 -16.473 -7.371 18.493 hybrid contribution 0.142 1.575 0.388 1.629 sum 4.180 -14.898 -6.983 16.976 Atomic orbital electron populations 1.21594 0.90336 1.03120 1.02133 1.22092 0.97598 0.94170 0.94015 1.21570 0.95058 0.95334 0.86475 1.44782 1.73436 1.04809 1.11014 1.19481 1.35359 0.85972 0.95848 0.90411 1.25569 1.01233 1.00961 0.97727 1.69865 1.49322 1.27482 1.12804 0.84988 0.76849 0.79022 0.78337 1.19418 1.21173 1.22143 1.22106 0.91314 0.82900 1.01012 1.23445 0.98015 0.94867 0.96472 0.87132 1.22411 0.99831 0.98331 0.80175 1.48448 1.17090 1.54901 1.13445 1.18468 0.80609 0.79996 0.84889 1.90687 1.78525 1.56672 1.20362 1.19520 0.92209 0.99969 1.02782 1.21594 1.01637 0.93819 0.94024 1.21411 0.92090 1.00306 1.00201 1.21238 0.97214 0.96054 0.95716 1.20975 0.96469 0.96091 0.97909 1.20805 0.91999 0.97245 0.97367 1.21165 0.97049 0.96380 0.98523 1.22318 0.93963 1.00094 0.98511 1.21111 0.92361 1.00514 0.97319 1.22132 0.86917 0.95156 0.95931 0.89800 0.93220 0.91394 0.98975 0.93454 0.94124 1.01243 0.88864 0.87387 0.91094 0.83543 0.81712 0.82537 0.91541 0.92214 0.89984 0.88994 0.87998 0.89423 0.92386 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 8.43 71.98 0.61 -2.38 16 2 C -0.08 -2.57 1.08 -51.03 -0.06 -2.62 16 3 C 0.14 6.22 6.37 86.51 0.55 6.77 16 4 N -0.62 -32.65 3.39 -690.94 -2.34 -35.00 16 5 C -0.24 -13.61 10.34 84.03 0.87 -12.74 16 6 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 7 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 8 N -0.94 -55.85 10.08 21.65 0.22 -55.63 16 9 Si 0.98 45.90 29.55 68.60 2.03 47.92 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 C 0.15 7.50 5.76 87.27 0.50 8.00 16 14 C -0.11 -3.77 3.80 -8.77 -0.03 -3.81 16 15 H 0.11 3.45 7.88 -2.39 -0.02 3.43 16 16 C 0.11 3.38 4.60 86.61 0.40 3.78 16 17 N -0.61 -20.40 3.32 -817.98 -2.71 -23.11 16 18 C 0.57 21.18 7.46 86.79 0.65 21.83 16 19 O -0.58 -25.12 15.61 -3.88 -0.06 -25.18 16 20 C -0.14 -4.55 5.44 -20.06 -0.11 -4.66 16 21 C -0.09 -2.25 8.01 22.50 0.18 -2.07 16 22 C -0.12 -2.34 10.03 22.20 0.22 -2.12 16 23 C -0.08 -1.62 10.03 22.36 0.22 -1.40 16 24 C -0.11 -2.73 6.13 -19.62 -0.12 -2.85 16 25 C -0.07 -2.26 5.99 -19.35 -0.12 -2.37 16 26 C -0.09 -2.83 6.15 30.52 0.19 -2.64 16 27 C -0.11 -2.27 7.08 31.51 0.22 -2.05 16 28 C -0.08 -1.39 6.77 30.53 0.21 -1.18 16 29 C 0.12 3.82 5.99 86.50 0.52 4.34 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H -0.01 -0.36 7.38 -2.39 -0.02 -0.38 16 34 H 0.05 1.99 7.82 -2.39 -0.02 1.97 16 35 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 36 H -0.03 -1.68 7.52 -2.39 -0.02 -1.70 16 37 H 0.09 5.16 5.44 -2.39 -0.01 5.15 16 38 H 0.11 2.25 7.38 -2.38 -0.02 2.23 16 39 H 0.07 2.28 6.24 -2.39 -0.01 2.27 16 40 H 0.15 2.96 5.92 -2.91 -0.02 2.95 16 41 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.07 2.25 7.06 -2.39 -0.02 2.24 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.06 2.08 7.21 -2.39 -0.02 2.06 16 50 H 0.10 2.44 7.87 -2.39 -0.02 2.42 16 Total: -1.00 -75.95 383.33 3.44 -72.51 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.94 Total: 19.72 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.37 Total: -1.24 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.84 Total: -113.74 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.95 3.44 -72.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092315035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.051 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds