Wall clock time and date at job start Sat Apr 11 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 115.55018 * 2 1 4 4 O 1.21288 * 120.00277 * 145.58250 * 3 2 1 5 5 N 1.34780 * 120.00327 * 325.58587 * 3 2 1 6 6 C 1.46494 * 120.00300 * 180.02562 * 5 3 2 7 7 H 1.09007 * 110.56108 * 36.96883 * 6 5 3 8 8 C 1.54851 * 110.62868 * 160.04592 * 6 5 3 9 9 C 1.56301 * 103.40616 * 118.36312 * 8 6 5 10 10 H 1.09004 * 115.71788 * 158.93790 * 9 8 6 11 11 C 1.55850 * 105.08167 * 288.42703 * 9 8 6 12 12 C 1.54220 * 103.56277 * 71.69056 * 11 9 8 13 13 C 1.55840 * 103.56838 * 0.02562 * 12 11 9 14 14 H 1.08994 * 116.12983 * 159.06116 * 13 12 11 15 15 N 1.50239 * 100.84056 * 33.12507 * 9 8 6 16 16 C 1.36928 * 130.83842 * 126.10952 * 15 9 8 17 17 H 1.08007 * 120.00092 * 179.65716 * 16 15 9 18 18 C 1.38815 * 120.00304 * 359.65777 * 16 15 9 19 19 N 1.31615 * 119.99700 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 179.72428 * 18 16 15 21 21 H 1.48496 * 109.47275 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46840 * 119.99963 * 20 18 16 23 23 H 1.48492 * 109.47231 * 240.00141 * 20 18 16 24 24 C 1.53002 * 117.49840 * 214.33075 * 2 1 3 25 25 C 1.53007 * 117.49736 * 145.67244 * 2 1 3 26 26 H 1.08999 * 117.49322 * 214.99806 * 25 2 1 27 27 C 1.50702 * 117.50035 * 0.02562 * 25 2 1 28 28 C 1.38233 * 119.99572 * 59.72370 * 27 25 2 29 29 C 1.38244 * 119.99460 * 179.80833 * 28 27 25 30 30 C 1.38239 * 119.99670 * 0.42596 * 29 28 27 31 31 C 1.38229 * 120.00271 * 359.80894 * 30 29 28 32 32 C 1.38230 * 119.99670 * 240.00218 * 27 25 2 33 33 H 1.08998 * 109.47015 * 34.41464 * 1 2 3 34 34 H 1.08998 * 109.47490 * 154.41927 * 1 2 3 35 35 H 1.09003 * 109.47222 * 274.41605 * 1 2 3 36 36 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 37 37 H 1.09000 * 110.62434 * 236.97961 * 8 6 5 38 38 H 1.09002 * 110.62359 * 359.97438 * 8 6 5 39 39 H 1.08993 * 110.62739 * 190.09458 * 11 9 8 40 40 H 1.09002 * 110.62488 * 312.95403 * 11 9 8 41 41 H 1.09004 * 110.64244 * 241.43812 * 12 11 9 42 42 H 1.08997 * 110.49675 * 118.49757 * 12 11 9 43 43 H 0.97005 * 119.99952 * 179.97438 * 19 18 16 44 44 H 1.09007 * 117.49577 * 359.97438 * 24 2 1 45 45 H 1.08998 * 117.50031 * 144.97074 * 24 2 1 46 46 H 1.07994 * 120.00744 * 0.02562 * 28 27 25 47 47 H 1.07996 * 120.00029 * 180.21162 * 29 28 27 48 48 H 1.08002 * 119.99269 * 179.78718 * 30 29 28 49 49 H 1.08001 * 120.00209 * 179.97438 * 31 30 29 50 50 H 1.07995 * 120.00697 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3595 0.0000 4 8 3.2233 1.5330 0.5937 5 7 1.6019 2.3829 -0.6597 6 6 2.2340 3.7044 -0.6601 7 1 3.3190 3.6098 -0.7060 8 6 1.7074 4.5607 -1.8380 9 6 1.0289 5.7763 -1.1274 10 1 0.9039 6.6711 -1.7372 11 6 -0.2672 5.1980 -0.4836 12 6 0.2605 4.3443 0.6873 13 6 1.8066 4.5184 0.5991 14 1 2.3664 4.3049 1.5096 15 7 1.9093 5.9246 0.0810 16 6 2.5904 7.0093 0.5649 17 1 3.1769 6.9201 1.4675 18 6 2.5273 8.2238 -0.1045 19 7 1.8123 8.3327 -1.2041 20 14 3.4504 9.7056 0.5600 21 1 4.1684 9.3251 1.8028 22 1 4.4298 10.1738 -0.4533 23 1 2.4873 10.7958 0.8583 24 6 2.2365 -1.1207 -0.7654 25 6 2.2365 -1.1208 0.7654 26 1 3.1714 -0.8747 1.2688 27 6 1.3720 -2.1406 1.4610 28 6 0.4816 -2.9053 0.7307 29 6 -0.3085 -3.8435 1.3683 30 6 -0.2144 -4.0108 2.7373 31 6 0.6725 -3.2427 3.4682 32 6 1.4655 -2.3072 2.8300 33 1 -0.3633 0.8478 -0.5808 34 1 -0.3634 -0.9269 -0.4437 35 1 -0.3634 0.0791 1.0246 36 1 0.7677 2.2442 -1.1347 37 1 2.5313 4.8930 -2.4695 38 1 0.9762 4.0018 -2.4221 39 1 -0.9037 6.0017 -0.1135 40 1 -0.8087 4.5798 -1.1997 41 1 -0.0166 3.2983 0.5557 42 1 -0.1149 4.7254 1.6370 43 1 1.7678 9.1814 -1.6717 44 1 1.6111 -1.8583 -1.2686 45 1 3.1711 -0.8746 -1.2693 46 1 0.4057 -2.7722 -0.3383 47 1 -1.0018 -4.4433 0.7974 48 1 -0.8342 -4.7414 3.2359 49 1 0.7458 -3.3731 4.5378 50 1 2.1582 -1.7070 3.4011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096138862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:34 Heat of formation + Delta-G solvation = 63.417683 kcal Electronic energy + Delta-G solvation = -29855.017504 eV Core-core repulsion = 26042.114162 eV Total energy + Delta-G solvation = -3812.903342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69436 -39.63022 -38.51978 -36.60466 -33.97818 -32.35372 -31.27426 -30.93733 -29.44651 -29.06420 -28.60778 -27.43102 -24.43926 -24.07556 -23.41987 -22.39753 -21.28870 -20.70021 -19.73712 -19.14448 -18.53064 -17.22056 -17.10783 -16.70075 -15.76687 -15.42747 -15.02057 -14.99295 -14.79805 -14.30772 -14.21303 -14.02160 -13.77218 -13.60101 -13.39604 -12.92666 -12.55619 -12.45572 -12.24470 -12.21730 -12.08073 -11.77055 -11.49461 -11.39934 -11.18740 -11.03313 -10.91954 -10.87733 -10.84692 -10.70999 -10.28271 -10.19934 -10.06193 -9.84137 -9.57118 -9.36405 -9.23224 -9.13674 -8.93149 -8.75131 -8.48158 -6.90878 -5.72718 -3.10419 1.06536 1.17495 2.67688 3.32288 3.39614 3.45395 3.47539 3.50299 3.89443 4.32761 4.46100 4.48984 4.57874 4.72569 4.75614 4.85112 4.90903 4.99857 5.21249 5.25292 5.35713 5.38718 5.42155 5.53844 5.55338 5.62764 5.67308 5.75939 5.81001 5.81349 5.85303 5.92572 5.98404 6.00764 6.07451 6.12726 6.25370 6.28947 6.31257 6.34839 6.43712 6.54264 6.61654 6.70015 6.76607 6.83151 6.97762 7.00817 7.27548 7.53550 7.75641 7.87085 8.17192 8.52606 9.10960 9.73363 10.53861 11.37085 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.002407 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.910749 B =11632.024389 C =11822.179638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.145 4.145 3 C 0.545 3.455 4 O -0.542 6.542 5 N -0.706 5.706 6 C 0.128 3.872 7 H 0.081 0.919 8 C -0.141 4.141 9 C 0.155 3.845 10 H 0.155 0.845 11 C -0.137 4.137 12 C -0.130 4.130 13 C 0.129 3.871 14 H 0.085 0.915 15 N -0.590 5.590 16 C -0.208 4.208 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.145 4.145 25 C -0.085 4.085 26 H 0.126 0.874 27 C -0.045 4.045 28 C -0.119 4.119 29 C -0.120 4.120 30 C -0.126 4.126 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.395 0.605 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -23.822 0.939 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 C 0.330 3.670 4 O -0.419 6.419 5 N -0.356 5.356 6 C 0.022 3.978 7 H 0.099 0.901 8 C -0.181 4.181 9 C 0.048 3.952 10 H 0.172 0.828 11 C -0.176 4.176 12 C -0.169 4.169 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.311 5.311 16 C -0.336 4.336 17 H 0.097 0.903 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.182 4.182 25 C -0.103 4.103 26 H 0.144 0.856 27 C -0.045 4.045 28 C -0.136 4.136 29 C -0.138 4.138 30 C -0.144 4.144 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.547 -23.318 1.369 24.008 hybrid contribution 0.008 0.648 0.165 0.669 sum -5.539 -22.670 1.534 23.388 Atomic orbital electron populations 1.21403 0.90530 1.02431 1.02875 1.21615 0.95947 0.89711 1.07554 1.19339 0.84423 0.84476 0.78770 1.90694 1.23450 1.83956 1.43830 1.46193 1.26612 1.10088 1.52741 1.22661 0.97248 0.79604 0.98301 0.90101 1.23372 1.00320 0.98431 0.95968 1.23862 0.86661 0.95684 0.89002 0.82833 1.22926 0.99430 0.98248 0.97004 1.22790 0.97737 0.97870 0.98541 1.23194 0.94003 0.86147 0.94673 0.89726 1.46484 1.53962 1.04225 1.26379 1.19116 1.21354 0.86825 1.06328 0.90271 1.24698 1.00814 0.97673 0.97655 1.69442 1.44387 1.24480 1.18919 0.85952 0.78849 0.82522 0.77935 1.20549 1.21791 1.21818 1.23274 1.02451 0.98627 0.93829 1.21178 0.99990 0.95535 0.93608 0.85616 1.19098 0.96172 0.95765 0.93481 1.21090 0.96310 0.96267 0.99976 1.21111 0.99454 0.98400 0.94790 1.21144 0.99059 0.99896 0.94342 1.21146 0.96353 0.96191 0.99913 1.21044 0.99616 0.98214 0.93872 0.91748 0.91416 0.91487 0.76980 0.91591 0.92804 0.92692 0.93676 0.93032 0.93134 0.93628 0.87593 0.87817 0.85865 0.86154 0.86275 0.86059 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.55 37.16 0.32 -0.77 16 2 C -0.14 -1.65 2.61 -155.66 -0.41 -2.06 16 3 C 0.54 8.39 7.39 -10.99 -0.08 8.31 16 4 O -0.54 -10.53 15.99 5.55 0.09 -10.45 16 5 N -0.71 -10.55 3.53 -51.36 -0.18 -10.73 16 6 C 0.13 2.40 3.08 -65.40 -0.20 2.20 16 7 H 0.08 1.72 7.70 -51.93 -0.40 1.32 16 8 C -0.14 -2.67 6.22 -23.98 -0.15 -2.82 16 9 C 0.15 3.47 4.74 -62.54 -0.30 3.18 16 10 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 11 C -0.14 -2.63 6.41 -24.57 -0.16 -2.79 16 12 C -0.13 -2.42 6.29 -24.58 -0.15 -2.57 16 13 C 0.13 2.74 5.35 -62.78 -0.34 2.40 16 14 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 15 N -0.59 -14.77 2.98 -145.53 -0.43 -15.20 16 16 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.92 -26.21 10.46 55.49 0.58 -25.63 16 20 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C -0.14 -1.39 9.22 -26.69 -0.25 -1.63 16 25 C -0.08 -0.93 5.56 -91.73 -0.51 -1.44 16 26 H 0.13 1.59 7.67 -51.93 -0.40 1.19 16 27 C -0.05 -0.45 5.05 -104.63 -0.53 -0.98 16 28 C -0.12 -1.01 7.77 -39.58 -0.31 -1.32 16 29 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 30 C -0.13 -1.00 10.05 -39.58 -0.40 -1.39 16 31 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 32 C -0.11 -1.08 9.74 -39.58 -0.39 -1.47 16 33 H 0.06 0.56 6.39 -51.93 -0.33 0.23 16 34 H 0.07 0.52 5.88 -51.93 -0.31 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 4.92 6.32 -40.82 -0.26 4.66 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.85 7.35 -51.93 -0.38 0.47 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.73 7.83 -51.93 -0.41 0.32 16 41 H 0.05 0.82 6.48 -51.93 -0.34 0.49 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.11 0.77 6.09 -51.93 -0.32 0.46 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.12 0.86 5.15 -52.49 -0.27 0.59 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -31.23 387.66 -11.48 -42.72 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.47 Total: 8.63 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.89 Total: -12.29 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.03 Total: -51.55 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.23 -11.48 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096138862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.135 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds