Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 115.55018 * 2 1 4 4 O 1.21288 * 120.00277 * 145.58250 * 3 2 1 5 5 N 1.34780 * 120.00327 * 325.58587 * 3 2 1 6 6 C 1.46494 * 120.00300 * 180.02562 * 5 3 2 7 7 H 1.09007 * 110.56108 * 36.96883 * 6 5 3 8 8 C 1.54851 * 110.62868 * 160.04592 * 6 5 3 9 9 C 1.56301 * 103.40616 * 118.36312 * 8 6 5 10 10 H 1.09004 * 115.71788 * 158.93790 * 9 8 6 11 11 C 1.55850 * 105.08167 * 288.42703 * 9 8 6 12 12 C 1.54220 * 103.56277 * 71.69056 * 11 9 8 13 13 C 1.55840 * 103.56838 * 0.02562 * 12 11 9 14 14 H 1.08994 * 116.12983 * 159.06116 * 13 12 11 15 15 N 1.50239 * 100.84056 * 33.12507 * 9 8 6 16 16 C 1.36928 * 130.83842 * 126.10952 * 15 9 8 17 17 H 1.08007 * 120.00092 * 179.65716 * 16 15 9 18 18 C 1.38815 * 120.00304 * 359.65777 * 16 15 9 19 19 N 1.31615 * 119.99700 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 179.72428 * 18 16 15 21 21 H 1.48496 * 109.47275 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46840 * 119.99963 * 20 18 16 23 23 H 1.48492 * 109.47231 * 240.00141 * 20 18 16 24 24 C 1.53002 * 117.49840 * 214.33075 * 2 1 3 25 25 C 1.53007 * 117.49736 * 145.67244 * 2 1 3 26 26 H 1.08999 * 117.49322 * 214.99806 * 25 2 1 27 27 C 1.50702 * 117.50035 * 0.02562 * 25 2 1 28 28 C 1.38233 * 119.99572 * 59.72370 * 27 25 2 29 29 C 1.38244 * 119.99460 * 179.80833 * 28 27 25 30 30 C 1.38239 * 119.99670 * 0.42596 * 29 28 27 31 31 C 1.38229 * 120.00271 * 359.80894 * 30 29 28 32 32 C 1.38230 * 119.99670 * 240.00218 * 27 25 2 33 33 H 1.08998 * 109.47015 * 34.41464 * 1 2 3 34 34 H 1.08998 * 109.47490 * 154.41927 * 1 2 3 35 35 H 1.09003 * 109.47222 * 274.41605 * 1 2 3 36 36 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 37 37 H 1.09000 * 110.62434 * 236.97961 * 8 6 5 38 38 H 1.09002 * 110.62359 * 359.97438 * 8 6 5 39 39 H 1.08993 * 110.62739 * 190.09458 * 11 9 8 40 40 H 1.09002 * 110.62488 * 312.95403 * 11 9 8 41 41 H 1.09004 * 110.64244 * 241.43812 * 12 11 9 42 42 H 1.08997 * 110.49675 * 118.49757 * 12 11 9 43 43 H 0.97005 * 119.99952 * 179.97438 * 19 18 16 44 44 H 1.09007 * 117.49577 * 359.97438 * 24 2 1 45 45 H 1.08998 * 117.50031 * 144.97074 * 24 2 1 46 46 H 1.07994 * 120.00744 * 0.02562 * 28 27 25 47 47 H 1.07996 * 120.00029 * 180.21162 * 29 28 27 48 48 H 1.08002 * 119.99269 * 179.78718 * 30 29 28 49 49 H 1.08001 * 120.00209 * 179.97438 * 31 30 29 50 50 H 1.07995 * 120.00697 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3595 0.0000 4 8 3.2233 1.5330 0.5937 5 7 1.6019 2.3829 -0.6597 6 6 2.2340 3.7044 -0.6601 7 1 3.3190 3.6098 -0.7060 8 6 1.7074 4.5607 -1.8380 9 6 1.0289 5.7763 -1.1274 10 1 0.9039 6.6711 -1.7372 11 6 -0.2672 5.1980 -0.4836 12 6 0.2605 4.3443 0.6873 13 6 1.8066 4.5184 0.5991 14 1 2.3664 4.3049 1.5096 15 7 1.9093 5.9246 0.0810 16 6 2.5904 7.0093 0.5649 17 1 3.1769 6.9201 1.4675 18 6 2.5273 8.2238 -0.1045 19 7 1.8123 8.3327 -1.2041 20 14 3.4504 9.7056 0.5600 21 1 4.1684 9.3251 1.8028 22 1 4.4298 10.1738 -0.4533 23 1 2.4873 10.7958 0.8583 24 6 2.2365 -1.1207 -0.7654 25 6 2.2365 -1.1208 0.7654 26 1 3.1714 -0.8747 1.2688 27 6 1.3720 -2.1406 1.4610 28 6 0.4816 -2.9053 0.7307 29 6 -0.3085 -3.8435 1.3683 30 6 -0.2144 -4.0108 2.7373 31 6 0.6725 -3.2427 3.4682 32 6 1.4655 -2.3072 2.8300 33 1 -0.3633 0.8478 -0.5808 34 1 -0.3634 -0.9269 -0.4437 35 1 -0.3634 0.0791 1.0246 36 1 0.7677 2.2442 -1.1347 37 1 2.5313 4.8930 -2.4695 38 1 0.9762 4.0018 -2.4221 39 1 -0.9037 6.0017 -0.1135 40 1 -0.8087 4.5798 -1.1997 41 1 -0.0166 3.2983 0.5557 42 1 -0.1149 4.7254 1.6370 43 1 1.7678 9.1814 -1.6717 44 1 1.6111 -1.8583 -1.2686 45 1 3.1711 -0.8746 -1.2693 46 1 0.4057 -2.7722 -0.3383 47 1 -1.0018 -4.4433 0.7974 48 1 -0.8342 -4.7414 3.2359 49 1 0.7458 -3.3731 4.5378 50 1 2.1582 -1.7070 3.4011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096138862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 47.696621 kcal Electronic energy + Delta-G solvation = -29855.699221 eV Core-core repulsion = 26042.114162 eV Total energy + Delta-G solvation = -3813.585058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82558 -40.82892 -39.67648 -37.58196 -35.52962 -34.25303 -31.94250 -31.63403 -31.05595 -30.75076 -29.67335 -28.86564 -26.27512 -24.78024 -24.57389 -23.16619 -22.75847 -21.68014 -21.30904 -20.36722 -20.11189 -18.90720 -18.03403 -17.68303 -17.12119 -16.83218 -16.53105 -15.98664 -15.90373 -15.80241 -15.42662 -15.24558 -14.83798 -14.27017 -14.24028 -14.09926 -13.94679 -13.63852 -13.50936 -13.30093 -13.26180 -13.09654 -12.89178 -12.83321 -12.81631 -12.61172 -12.39424 -12.06631 -12.00050 -11.90602 -11.84592 -11.59842 -11.44130 -11.21383 -11.11448 -11.05937 -10.79697 -10.71369 -9.99694 -9.75667 -9.43408 -8.87551 -7.81694 -5.20851 0.41665 0.55397 1.44547 1.45196 1.52797 1.55120 2.13282 2.48442 2.68261 3.10967 3.31524 3.45801 3.56495 3.63713 3.78685 3.90909 3.97709 4.02733 4.10977 4.12520 4.18938 4.26830 4.33312 4.41416 4.44436 4.58452 4.62832 4.69048 4.72779 4.73497 4.78433 4.82577 4.90564 4.92729 4.96000 5.05640 5.08878 5.13319 5.18581 5.20705 5.22622 5.30928 5.31290 5.44433 5.53802 5.63961 5.68539 5.73631 5.76790 5.88055 6.16525 6.26045 6.62858 7.04224 7.30835 7.66981 8.53216 9.25386 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.002407 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.910749 B =11632.024389 C =11822.179638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.148 4.148 3 C 0.541 3.459 4 O -0.590 6.590 5 N -0.691 5.691 6 C 0.146 3.854 7 H 0.049 0.951 8 C -0.125 4.125 9 C 0.139 3.861 10 H 0.122 0.878 11 C -0.124 4.124 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.061 0.939 15 N -0.618 5.618 16 C -0.225 4.225 17 H 0.069 0.931 18 C -0.063 4.063 19 N -0.943 5.943 20 Si 0.976 3.024 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.290 1.290 24 C -0.124 4.124 25 C -0.092 4.092 26 H 0.097 0.903 27 C -0.057 4.057 28 C -0.119 4.119 29 C -0.120 4.120 30 C -0.130 4.130 31 C -0.127 4.127 32 C -0.133 4.133 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.413 0.587 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.250 0.750 44 H 0.140 0.860 45 H 0.096 0.904 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.133 0.867 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.972 -26.795 -0.266 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.151 4.151 3 C 0.329 3.671 4 O -0.470 6.470 5 N -0.343 5.343 6 C 0.039 3.961 7 H 0.068 0.932 8 C -0.165 4.165 9 C 0.033 3.967 10 H 0.140 0.860 11 C -0.164 4.164 12 C -0.154 4.154 13 C 0.010 3.990 14 H 0.079 0.921 15 N -0.340 5.340 16 C -0.354 4.354 17 H 0.086 0.914 18 C -0.255 4.255 19 N -0.592 5.592 20 Si 0.805 3.195 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.161 4.161 25 C -0.111 4.111 26 H 0.115 0.885 27 C -0.057 4.057 28 C -0.137 4.137 29 C -0.138 4.138 30 C -0.148 4.148 31 C -0.145 4.145 32 C -0.151 4.151 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.158 0.842 45 H 0.114 0.886 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.151 0.849 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.141 -26.337 0.152 27.567 hybrid contribution 0.858 1.498 0.605 1.829 sum -7.283 -24.839 0.757 25.896 Atomic orbital electron populations 1.21443 0.88295 1.04327 1.02775 1.21543 0.97240 0.87233 1.09062 1.20101 0.83760 0.85886 0.77389 1.90683 1.25783 1.84901 1.45675 1.45929 1.27097 1.08433 1.52887 1.22093 0.95763 0.81263 0.96957 0.93249 1.23200 1.00399 0.97297 0.95607 1.23795 0.88335 0.96037 0.88489 0.86044 1.22823 0.97715 0.98215 0.97600 1.22688 0.95004 0.99729 0.98023 1.23313 0.95926 0.85054 0.94742 0.92102 1.46733 1.54568 1.04954 1.27742 1.19317 1.21562 0.88322 1.06209 0.91355 1.25405 1.02044 0.99857 0.98231 1.69661 1.45319 1.24611 1.19632 0.85037 0.77634 0.79444 0.77379 1.20070 1.21788 1.21673 1.23414 1.02247 0.97641 0.92766 1.21082 0.99234 0.96000 0.94804 0.88508 1.19065 0.96928 0.96207 0.93479 1.21294 0.95662 0.95849 1.00879 1.21469 0.99331 0.98064 0.94927 1.21483 0.98702 0.99808 0.94782 1.21357 0.96335 0.95991 1.00789 1.21147 1.00421 0.99189 0.94377 0.90602 0.88879 0.92475 0.74785 0.93442 0.88412 0.94570 0.89230 0.89568 0.94161 0.94056 0.84213 0.88594 0.83840 0.83536 0.84113 0.84879 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 8.55 71.98 0.62 -1.05 16 2 C -0.15 -3.06 2.61 -52.93 -0.14 -3.20 16 3 C 0.54 16.29 7.39 87.65 0.65 16.94 16 4 O -0.59 -23.76 15.99 -3.05 -0.05 -23.81 16 5 N -0.69 -19.34 3.53 -434.80 -1.54 -20.88 16 6 C 0.15 5.50 3.08 46.63 0.14 5.65 16 7 H 0.05 2.18 7.70 -2.38 -0.02 2.16 16 8 C -0.13 -4.62 6.22 32.37 0.20 -4.42 16 9 C 0.14 6.26 4.74 46.39 0.22 6.48 16 10 H 0.12 6.38 5.52 -2.38 -0.01 6.36 16 11 C -0.12 -4.55 6.41 31.99 0.21 -4.35 16 12 C -0.12 -4.13 6.29 31.99 0.20 -3.93 16 13 C 0.12 5.11 5.35 46.26 0.25 5.36 16 14 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 15 N -0.62 -31.90 2.98 -614.33 -1.83 -33.73 16 16 C -0.23 -12.99 10.59 84.04 0.89 -12.10 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 19 N -0.94 -54.99 10.46 21.65 0.23 -54.76 16 20 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 C -0.12 -2.05 9.22 30.62 0.28 -1.77 16 25 C -0.09 -1.98 5.56 -11.51 -0.06 -2.04 16 26 H 0.10 2.61 7.67 -2.39 -0.02 2.59 16 27 C -0.06 -1.05 5.05 -19.87 -0.10 -1.15 16 28 C -0.12 -1.62 7.77 22.27 0.17 -1.44 16 29 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 30 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 31 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 32 C -0.13 -2.61 9.74 22.27 0.22 -2.39 16 33 H 0.08 0.95 6.39 -2.39 -0.02 0.93 16 34 H 0.09 0.94 5.88 -2.39 -0.01 0.92 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.41 8.57 6.32 -92.71 -0.59 7.98 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.10 2.72 7.35 -2.39 -0.02 2.70 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 41 H 0.09 2.47 6.48 -2.38 -0.02 2.46 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 44 H 0.14 1.37 6.09 -2.38 -0.01 1.36 16 45 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.14 1.27 5.15 -2.91 -0.02 1.26 16 47 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -72.90 387.66 4.09 -68.81 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.37 Total: 26.54 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 4.88 Total: -10.95 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.14 Total: -109.37 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.90 4.09 -68.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096138862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.508 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds