Wall clock time and date at job start Sat Apr 11 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 120.00074 * 2 1 4 4 C 1.38209 * 119.99945 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00453 * 0.02979 * 4 3 2 6 6 C 1.38214 * 119.99800 * 359.95057 * 5 4 3 7 7 C 1.50699 * 119.99851 * 180.02562 * 6 5 4 8 8 C 1.50701 * 115.54848 * 149.76636 * 7 6 5 9 9 O 1.21285 * 119.99571 * 90.20616 * 8 7 6 10 10 N 1.34776 * 120.00343 * 270.21376 * 8 7 6 11 11 C 1.46500 * 119.99975 * 185.00716 * 10 8 7 12 12 H 1.09001 * 110.55971 * 37.19973 * 11 10 8 13 13 C 1.54854 * 110.62621 * 160.27243 * 11 10 8 14 14 C 1.55847 * 103.44412 * 118.48846 * 13 11 10 15 15 H 1.08995 * 116.12302 * 159.15243 * 14 13 11 16 16 C 1.55850 * 105.06352 * 288.17687 * 14 13 11 17 17 C 1.54849 * 103.44477 * 71.82354 * 16 14 13 18 18 C 1.55843 * 103.44655 * 0.02562 * 17 16 14 19 19 H 1.09002 * 116.12756 * 159.15059 * 18 17 16 20 20 N 1.50232 * 101.05389 * 32.93380 * 18 17 16 21 21 C 1.36938 * 130.84170 * 126.05222 * 20 18 17 22 22 H 1.08003 * 119.99582 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00528 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99466 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99985 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47515 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.46987 * 120.00160 * 25 23 21 28 28 H 1.48504 * 109.46858 * 239.99540 * 25 23 21 29 29 C 1.52998 * 117.50016 * 4.09926 * 7 6 5 30 30 C 1.52997 * 60.03182 * 252.47601 * 29 7 6 31 31 C 1.38215 * 120.00376 * 180.21474 * 2 1 3 32 32 H 1.09006 * 109.46911 * 90.00028 * 1 2 3 33 33 H 1.09002 * 109.47256 * 209.99257 * 1 2 3 34 34 H 1.08997 * 109.47246 * 329.99779 * 1 2 3 35 35 H 1.07996 * 119.99382 * 0.02562 * 3 2 1 36 36 H 1.08003 * 119.99547 * 179.97438 * 4 3 2 37 37 H 1.07996 * 119.99974 * 179.97438 * 5 4 3 38 38 H 0.96999 * 119.99497 * 4.99992 * 10 8 7 39 39 H 1.08992 * 110.62633 * 236.98111 * 13 11 10 40 40 H 1.09001 * 110.62321 * 359.97438 * 13 11 10 41 41 H 1.09003 * 110.62251 * 190.31450 * 16 14 13 42 42 H 1.09002 * 110.62322 * 313.17636 * 16 14 13 43 43 H 1.08996 * 110.62910 * 241.50543 * 17 16 14 44 44 H 1.09001 * 110.62257 * 118.48852 * 17 16 14 45 45 H 0.97000 * 119.99791 * 180.02562 * 24 23 21 46 46 H 1.08997 * 117.49932 * 359.97438 * 29 7 6 47 47 H 1.09005 * 117.49863 * 144.97132 * 29 7 6 48 48 H 1.08996 * 117.49889 * 107.50568 * 30 29 7 49 49 H 1.09004 * 117.49533 * 252.51983 * 30 29 7 50 50 H 1.08000 * 120.00037 * 0.04305 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0004 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0013 8 6 3.6419 -3.6520 0.6864 9 8 2.9083 -4.3817 0.0537 10 7 3.8378 -3.8695 2.0020 11 6 3.2536 -5.0494 2.6443 12 1 3.2871 -5.9070 1.9724 13 6 3.9833 -5.3645 3.9733 14 6 2.8608 -5.2237 5.0452 15 1 3.0378 -5.7289 5.9947 16 6 2.5804 -3.6936 5.1396 17 6 1.8508 -3.3786 3.8106 18 6 1.7891 -4.7614 3.0945 19 1 1.0294 -4.8673 2.3200 20 7 1.6608 -5.6887 4.2694 21 6 0.7356 -6.6593 4.5474 22 1 -0.0697 -6.8521 3.8540 23 6 0.8326 -7.3953 5.7204 24 7 1.8143 -7.1605 6.5651 25 14 -0.4291 -8.7196 6.0991 26 1 -1.4228 -8.7862 4.9977 27 1 0.2544 -10.0316 6.2297 28 1 -1.1221 -8.3937 7.3714 29 6 5.8598 -2.4369 0.0984 30 6 5.1938 -2.8232 -1.2238 31 6 2.1981 -1.1969 -0.0045 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8901 0.5137 34 1 -0.3633 0.8899 0.5138 35 1 1.6582 2.1326 0.0004 36 1 4.1203 2.1327 0.0001 37 1 5.3517 0.0001 0.0004 38 1 4.3658 -3.2447 2.5234 39 1 4.3790 -6.3800 3.9627 40 1 4.7801 -4.6430 4.1542 41 1 1.9380 -3.4728 5.9921 42 1 3.5143 -3.1357 5.2094 43 1 2.4228 -2.6642 3.2185 44 1 0.8465 -3.0016 4.0040 45 1 1.8824 -7.6751 7.3846 46 1 6.3184 -1.4501 0.1614 47 1 6.3626 -3.2257 0.6580 48 1 5.2144 -2.0905 -2.0306 49 1 5.2583 -3.8662 -1.5339 50 1 1.6582 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096612459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:42 Heat of formation + Delta-G solvation = 60.392175 kcal Electronic energy + Delta-G solvation = -30517.449537 eV Core-core repulsion = 26704.414999 eV Total energy + Delta-G solvation = -3813.034538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66345 -39.48522 -38.36056 -36.51838 -33.87004 -32.63359 -32.28386 -30.96482 -29.30606 -29.02097 -27.68184 -27.00547 -24.88734 -23.98914 -22.87693 -22.51597 -21.36708 -20.99287 -19.73420 -19.17924 -18.50917 -17.47489 -16.90398 -16.61927 -15.64229 -15.41480 -15.12334 -14.86029 -14.67907 -14.43711 -14.07214 -13.96528 -13.83007 -13.58544 -13.12542 -12.81260 -12.42018 -12.30625 -12.28201 -12.21780 -11.84126 -11.75018 -11.50747 -11.47588 -11.19845 -11.03044 -10.91141 -10.88080 -10.85310 -10.75032 -10.68712 -10.19993 -10.05803 -9.82115 -9.55617 -9.35949 -9.22656 -8.92940 -8.83902 -8.63721 -8.48942 -6.90248 -5.72176 -3.09882 1.17133 1.28807 2.80231 3.24825 3.39619 3.43614 3.46365 3.48229 3.84577 4.28983 4.45535 4.60899 4.67659 4.76398 4.81487 4.93673 5.00220 5.21641 5.23467 5.26006 5.39344 5.40281 5.49202 5.52534 5.57853 5.63558 5.67836 5.73228 5.81687 5.85737 5.87374 5.97151 5.99410 6.03860 6.08275 6.14211 6.32402 6.33279 6.35860 6.45471 6.53033 6.55066 6.63731 6.70179 6.83146 6.89036 6.98499 7.01766 7.28282 7.53909 7.75693 7.86799 8.17708 8.50255 9.11357 9.73872 10.54510 11.37622 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003208 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.930621 B = 8727.158695 C = 9419.195767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.034 4.034 7 C -0.118 4.118 8 C 0.549 3.451 9 O -0.535 6.535 10 N -0.704 5.704 11 C 0.128 3.872 12 H 0.080 0.920 13 C -0.140 4.140 14 C 0.154 3.846 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.129 4.129 18 C 0.130 3.870 19 H 0.084 0.916 20 N -0.590 5.590 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.916 3.084 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.164 4.164 30 C -0.135 4.135 31 C -0.104 4.104 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.253 0.747 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 16.754 -12.196 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.142 4.142 6 C -0.034 4.034 7 C -0.121 4.121 8 C 0.334 3.666 9 O -0.412 6.412 10 N -0.354 5.354 11 C 0.022 3.978 12 H 0.098 0.902 13 C -0.180 4.180 14 C 0.047 3.953 15 H 0.171 0.829 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.021 3.979 19 H 0.102 0.898 20 N -0.311 5.311 21 C -0.336 4.336 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.747 3.253 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.201 4.201 30 C -0.173 4.173 31 C -0.122 4.122 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.334 15.923 -12.450 21.502 hybrid contribution -0.363 -0.267 0.431 0.623 sum 6.971 15.656 -12.019 20.932 Atomic orbital electron populations 1.20816 0.91064 1.03100 1.02346 1.19918 0.96249 0.92865 0.98960 1.21035 0.94299 0.97428 1.01469 1.21038 0.94249 0.97671 1.00386 1.20950 0.99837 0.91651 1.01762 1.18669 0.93061 0.91461 1.00227 1.20156 0.92882 0.94046 1.05002 1.19222 0.81171 0.84007 0.82232 1.90707 1.37188 1.47967 1.65312 1.46215 1.53556 1.27059 1.08541 1.22670 0.95287 0.86138 0.93714 0.90194 1.23278 0.98400 1.00488 0.95797 1.23765 0.84146 0.90384 0.96970 0.82859 1.23049 0.98110 0.99711 0.96758 1.22881 0.99357 0.97548 0.97040 1.23181 0.93686 0.90235 0.90789 0.89751 1.46501 1.28406 1.38389 1.17791 1.19114 1.03167 1.08360 1.02972 0.90285 1.24690 0.98874 1.00222 0.97000 1.69446 1.32483 1.43235 1.12045 0.85964 0.80332 0.81227 0.77802 1.20547 1.21789 1.21825 1.23234 0.92000 1.03897 1.00965 1.23039 0.99823 1.03372 0.91049 1.21021 0.93435 0.98271 0.99503 0.91159 0.91131 0.91526 0.86208 0.86052 0.85883 0.76942 0.91603 0.92724 0.92724 0.93717 0.93003 0.93207 0.93646 0.87559 0.87741 0.87808 0.87803 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.08 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 5 C -0.12 -1.23 9.36 -39.58 -0.37 -1.60 16 6 C -0.03 -0.41 5.48 -104.62 -0.57 -0.98 16 7 C -0.12 -1.42 2.32 -156.78 -0.36 -1.78 16 8 C 0.55 8.58 5.90 -10.99 -0.06 8.52 16 9 O -0.54 -10.48 16.54 5.55 0.09 -10.39 16 10 N -0.70 -10.65 3.63 -51.36 -0.19 -10.84 16 11 C 0.13 2.40 3.04 -65.40 -0.20 2.20 16 12 H 0.08 1.68 7.78 -51.93 -0.40 1.28 16 13 C -0.14 -2.65 6.20 -24.23 -0.15 -2.80 16 14 C 0.15 3.47 4.72 -62.78 -0.30 3.18 16 15 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 16 C -0.14 -2.68 6.44 -24.23 -0.16 -2.84 16 17 C -0.13 -2.44 6.32 -24.24 -0.15 -2.60 16 18 C 0.13 2.77 5.35 -62.77 -0.34 2.43 16 19 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 20 N -0.59 -14.79 2.99 -145.76 -0.44 -15.22 16 21 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 22 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.92 -26.20 10.47 55.49 0.58 -25.62 16 25 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C -0.16 -1.47 9.57 -26.73 -0.26 -1.72 16 30 C -0.14 -1.38 9.91 -26.70 -0.26 -1.65 16 31 C -0.10 -1.39 8.98 -39.58 -0.36 -1.74 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.12 0.95 5.95 -52.49 -0.31 0.64 16 38 H 0.40 5.16 8.03 -40.82 -0.33 4.83 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 43 H 0.05 0.87 6.49 -51.93 -0.34 0.54 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.11 0.74 6.10 -51.93 -0.32 0.42 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.13 1.93 7.09 -52.49 -0.37 1.56 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -31.11 395.48 -11.60 -42.71 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.76 Total: 9.49 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -4.83 Total: -13.17 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.04 Total: -51.68 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.11 -11.60 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096612459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.099 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds