Wall clock time and date at job start Sat Apr 11 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 120.00297 * 2 1 4 4 C 1.38206 * 120.00035 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00342 * 359.97423 * 4 3 2 6 6 C 1.38215 * 119.99649 * 359.74976 * 5 4 3 7 7 C 1.38217 * 119.99751 * 179.97438 * 2 1 3 8 8 C 1.50691 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50698 * 115.55401 * 294.43424 * 8 7 2 10 10 O 1.21280 * 120.00406 * 124.80897 * 9 8 7 11 11 N 1.34782 * 119.99744 * 304.81045 * 9 8 7 12 12 C 1.46495 * 119.99900 * 185.20076 * 11 9 8 13 13 H 1.09003 * 110.56166 * 31.27803 * 12 11 9 14 14 C 1.54856 * 110.62568 * 154.17643 * 12 11 9 15 15 C 1.55843 * 103.44691 * 118.65112 * 14 12 11 16 16 H 1.08998 * 115.56102 * 158.81715 * 15 14 12 17 17 C 1.55853 * 105.73706 * 287.98656 * 15 14 12 18 18 C 1.55488 * 103.32455 * 71.92508 * 17 15 14 19 19 C 1.55849 * 103.32678 * 359.97438 * 18 17 15 20 20 H 1.08999 * 116.12633 * 159.23056 * 19 18 17 21 21 N 1.50232 * 101.05078 * 32.93558 * 15 14 12 22 22 C 1.36936 * 130.84054 * 125.28779 * 21 15 14 23 23 H 1.08000 * 120.00448 * 173.15763 * 22 21 15 24 24 C 1.38822 * 119.99553 * 353.15374 * 22 21 15 25 25 N 1.31616 * 119.99902 * 5.76632 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 185.76162 * 24 22 21 27 27 H 1.48500 * 109.47278 * 94.99184 * 26 24 22 28 28 H 1.48495 * 109.47115 * 214.99777 * 26 24 22 29 29 H 1.48509 * 109.46997 * 334.99344 * 26 24 22 30 30 C 1.53006 * 117.50095 * 80.10285 * 8 7 2 31 31 C 1.53000 * 117.49882 * 148.76003 * 8 7 2 32 32 H 1.08996 * 109.47403 * 272.24271 * 1 2 3 33 33 H 1.09001 * 109.47000 * 32.23768 * 1 2 3 34 34 H 1.08997 * 109.47180 * 152.23739 * 1 2 3 35 35 H 1.08000 * 119.99895 * 359.97438 * 3 2 1 36 36 H 1.08003 * 120.00083 * 179.97438 * 4 3 2 37 37 H 1.08004 * 120.00210 * 179.97438 * 5 4 3 38 38 H 1.08004 * 120.00095 * 180.27631 * 6 5 4 39 39 H 0.97003 * 119.99682 * 5.19899 * 11 9 8 40 40 H 1.09000 * 110.62793 * 0.15768 * 14 12 11 41 41 H 1.09000 * 110.62821 * 237.13657 * 14 12 11 42 42 H 1.09003 * 110.62367 * 190.49852 * 17 15 14 43 43 H 1.09000 * 110.62995 * 313.52282 * 17 15 14 44 44 H 1.08991 * 110.61004 * 241.58247 * 18 17 15 45 45 H 1.09001 * 110.89228 * 118.54731 * 18 17 15 46 46 H 0.96998 * 120.00041 * 179.97438 * 25 24 22 47 47 H 1.08988 * 117.50330 * 215.00471 * 30 8 7 48 48 H 1.09007 * 117.49388 * 0.02562 * 30 8 7 49 49 H 1.09002 * 117.49715 * 359.97438 * 31 8 7 50 50 H 1.08998 * 117.50109 * 144.97284 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0005 9 6 0.6320 -2.7835 1.2381 10 8 -0.5525 -3.0262 1.1437 11 7 1.2216 -2.7654 2.4499 12 6 0.4601 -3.1500 3.6408 13 1 -0.2903 -3.8997 3.3899 14 6 1.4071 -3.6753 4.7478 15 6 1.1830 -2.6746 5.9213 16 1 1.4624 -3.0389 6.9099 17 6 1.8632 -1.3442 5.4781 18 6 0.9139 -0.8086 4.3692 19 6 -0.2044 -1.8918 4.2996 20 1 -1.1497 -1.5780 3.8566 21 7 -0.2679 -2.3323 5.7349 22 6 -1.3239 -2.4054 6.6035 23 1 -2.2865 -2.0074 6.3181 24 6 -1.1572 -2.9911 7.8510 25 7 0.0393 -3.3734 8.2440 26 14 -2.6312 -3.2365 8.9721 27 1 -3.1670 -4.6097 8.7918 28 1 -2.2150 -3.0490 10.3851 29 1 -3.6834 -2.2458 8.6304 30 6 0.8897 -2.9975 -1.3365 31 6 2.0964 -3.6942 -0.7028 32 1 -0.3634 0.0402 1.0268 33 1 -0.3633 0.8693 -0.5482 34 1 -0.3633 -0.9093 -0.4787 35 1 1.6584 2.1326 -0.0004 36 1 4.1205 2.1326 0.0001 37 1 5.3518 -0.0001 0.0016 38 1 4.1206 -2.1324 0.0127 39 1 2.1503 -2.4978 2.5335 40 1 2.4436 -3.6471 4.4117 41 1 1.1263 -4.6854 5.0458 42 1 1.9169 -0.6441 6.3119 43 1 2.8564 -1.5371 5.0726 44 1 1.4386 -0.7372 3.4165 45 1 0.4956 0.1583 4.6492 46 1 0.1559 -3.7823 9.1158 47 1 -0.0628 -3.5269 -1.3211 48 1 1.0702 -2.3797 -2.2163 49 1 3.0702 -3.5344 -1.1659 50 1 1.9380 -4.6820 -0.2701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096663484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:53 Heat of formation + Delta-G solvation = 59.684035 kcal Electronic energy + Delta-G solvation = -30980.767047 eV Core-core repulsion = 27167.701802 eV Total energy + Delta-G solvation = -3813.065245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71978 -39.40712 -38.32729 -36.24847 -33.86178 -32.84013 -32.29322 -30.76554 -29.28298 -29.00348 -27.68478 -26.95725 -24.89540 -23.97741 -22.86807 -22.03191 -21.42748 -21.17072 -19.75821 -19.28042 -18.49582 -17.54984 -16.88326 -16.25176 -15.58649 -15.47117 -15.19972 -14.81156 -14.73783 -14.43549 -14.05316 -14.01233 -13.69607 -13.54082 -13.20926 -12.81482 -12.32112 -12.24425 -12.20570 -12.08645 -11.75364 -11.74397 -11.49138 -11.39306 -11.27970 -11.04086 -10.91616 -10.87138 -10.81833 -10.63541 -10.45513 -10.20182 -10.07012 -9.84610 -9.66921 -9.31088 -9.28654 -8.89600 -8.87471 -8.64481 -8.45280 -6.88419 -5.72745 -3.09639 1.17616 1.26364 2.74902 3.36091 3.41137 3.46363 3.47573 3.50703 3.78953 4.36934 4.46502 4.65864 4.75561 4.77700 4.86149 4.92200 4.97494 5.22995 5.23858 5.39431 5.40289 5.44134 5.48232 5.59706 5.66855 5.69133 5.74293 5.79556 5.81624 5.86490 5.92227 5.97120 5.98548 6.10117 6.15242 6.20349 6.33597 6.34155 6.35843 6.37418 6.54829 6.55855 6.63659 6.73138 6.83665 6.86814 6.98693 7.01730 7.29603 7.55500 7.76659 7.89954 8.17977 8.54141 9.11251 9.74074 10.55815 11.37287 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003341 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.997953 B = 8379.251721 C = 8808.858645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.107 4.107 7 C -0.051 4.051 8 C -0.119 4.119 9 C 0.551 3.449 10 O -0.538 6.538 11 N -0.703 5.703 12 C 0.127 3.873 13 H 0.083 0.917 14 C -0.139 4.139 15 C 0.155 3.845 16 H 0.152 0.848 17 C -0.137 4.137 18 C -0.127 4.127 19 C 0.130 3.870 20 H 0.083 0.917 21 N -0.591 5.591 22 C -0.211 4.211 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.137 4.137 31 C -0.154 4.154 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.396 0.604 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.253 0.747 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.166 4.842 -19.014 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.125 4.125 7 C -0.051 4.051 8 C -0.123 4.123 9 C 0.336 3.664 10 O -0.416 6.416 11 N -0.353 5.353 12 C 0.021 3.979 13 H 0.101 0.899 14 C -0.179 4.179 15 C 0.048 3.952 16 H 0.169 0.831 17 C -0.176 4.176 18 C -0.167 4.167 19 C 0.021 3.979 20 H 0.101 0.899 21 N -0.311 5.311 22 C -0.339 4.339 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.174 4.174 31 C -0.191 4.191 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.230 0.770 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.127 0.873 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.132 4.567 -18.739 21.340 hybrid contribution -0.160 0.123 0.630 0.661 sum 8.972 4.689 -18.109 20.747 Atomic orbital electron populations 1.20913 0.90821 1.03142 1.03077 1.19797 0.96375 0.92240 0.97780 1.21031 0.94260 0.97432 1.01115 1.21141 0.94276 0.98085 0.99804 1.21069 0.99767 0.92358 1.01290 1.21008 0.93178 0.98347 0.99996 1.18681 0.92743 0.91567 1.02148 1.20104 1.03687 0.94303 0.94175 1.19205 0.87021 0.76719 0.83473 1.90695 1.15050 1.49311 1.86498 1.46150 1.15303 1.67354 1.06458 1.22862 0.93858 0.98476 0.82656 0.89856 1.23259 0.96432 1.01083 0.97119 1.23688 0.83258 0.89911 0.98349 0.83144 1.23153 0.96352 1.00576 0.97550 1.22957 0.97769 0.98538 0.97404 1.23369 0.95441 0.92420 0.86703 0.89874 1.46487 1.04510 1.74572 1.05542 1.19062 0.89023 1.31339 0.94434 0.90369 1.24720 0.96921 1.01146 0.97776 1.69474 1.19855 1.47200 1.20422 0.86051 0.81639 0.77993 0.79845 1.21666 1.21794 1.20692 1.23028 0.98721 1.02129 0.93512 1.23112 0.98084 0.95619 1.02282 0.90726 0.91791 0.90468 0.86031 0.86175 0.86076 0.85863 0.77016 0.92844 0.91594 0.92680 0.93713 0.93084 0.93140 0.93600 0.87303 0.88069 0.87775 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.96 36.01 0.32 -1.16 16 2 C -0.06 -0.72 5.86 -104.62 -0.61 -1.34 16 3 C -0.12 -1.26 9.71 -39.59 -0.38 -1.64 16 4 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 5 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 6 C -0.11 -1.05 9.23 -39.58 -0.37 -1.41 16 7 C -0.05 -0.58 4.96 -104.63 -0.52 -1.09 16 8 C -0.12 -1.41 1.16 -156.81 -0.18 -1.59 16 9 C 0.55 8.53 6.08 -10.98 -0.07 8.46 16 10 O -0.54 -10.26 16.01 5.56 0.09 -10.17 16 11 N -0.70 -10.87 3.77 -50.89 -0.19 -11.06 16 12 C 0.13 2.43 3.17 -64.90 -0.21 2.22 16 13 H 0.08 1.79 7.60 -51.93 -0.39 1.39 16 14 C -0.14 -2.69 6.22 -24.23 -0.15 -2.85 16 15 C 0.15 3.50 4.66 -62.80 -0.29 3.21 16 16 H 0.15 3.89 5.56 -51.93 -0.29 3.61 16 17 C -0.14 -2.68 6.49 -23.89 -0.16 -2.83 16 18 C -0.13 -2.40 6.37 -23.89 -0.15 -2.55 16 19 C 0.13 2.75 5.35 -62.24 -0.33 2.42 16 20 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 21 N -0.59 -14.79 2.97 -145.21 -0.43 -15.22 16 22 C -0.21 -5.84 10.58 -15.06 -0.16 -6.00 16 23 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.92 -26.18 10.50 55.49 0.58 -25.59 16 26 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 30 C -0.14 -1.42 8.86 -26.69 -0.24 -1.66 16 31 C -0.15 -1.46 9.43 -26.69 -0.25 -1.71 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.08 0.99 5.92 -51.93 -0.31 0.69 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.99 7.04 -52.48 -0.37 0.62 16 39 H 0.40 5.46 7.81 -40.82 -0.32 5.14 16 40 H 0.05 0.88 7.44 -51.93 -0.39 0.49 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.75 7.85 -51.93 -0.41 0.35 16 44 H 0.05 0.86 6.48 -51.93 -0.34 0.52 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.11 1.25 7.83 -51.94 -0.41 0.84 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.10 0.78 7.16 -51.93 -0.37 0.41 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -30.57 392.90 -11.47 -42.05 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.78 Total: 9.92 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -4.64 Total: -12.93 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.04 Total: -51.88 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.57 -11.47 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096663484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.731 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds