Wall clock time and date at job start Sat Apr 11 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 115.54796 * 2 1 4 4 O 1.21279 * 119.99561 * 145.67470 * 3 2 1 5 5 N 1.34776 * 120.00008 * 325.67202 * 3 2 1 6 6 C 1.46506 * 119.99805 * 180.02562 * 5 3 2 7 7 H 1.08997 * 110.55839 * 34.29528 * 6 5 3 8 8 C 1.54849 * 110.62525 * 271.39956 * 6 5 3 9 9 C 1.56217 * 103.27235 * 241.54488 * 8 6 5 10 10 H 1.09006 * 115.55979 * 159.50425 * 9 8 6 11 11 C 1.55834 * 105.00406 * 288.06446 * 9 8 6 12 12 C 1.54856 * 103.44732 * 71.87573 * 11 9 8 13 13 C 1.55842 * 103.44377 * 0.02562 * 12 11 9 14 14 H 1.09001 * 115.56173 * 159.56513 * 13 12 11 15 15 N 1.50235 * 101.05170 * 32.93264 * 13 12 11 16 16 C 1.36939 * 130.83571 * 126.01693 * 15 13 12 17 17 H 1.08002 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00136 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00407 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47122 * 59.99544 * 20 18 16 22 22 H 1.48500 * 109.47211 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46899 * 299.99716 * 20 18 16 24 24 C 1.52996 * 117.49779 * 214.29710 * 2 1 3 25 25 C 1.52992 * 117.50013 * 145.67500 * 2 1 3 26 26 H 1.09003 * 117.49627 * 214.99898 * 25 2 1 27 27 C 1.50696 * 117.49964 * 359.97438 * 25 2 1 28 28 C 1.38230 * 120.00346 * 240.00036 * 27 25 2 29 29 C 1.38235 * 120.00326 * 180.02562 * 28 27 25 30 30 C 1.38234 * 119.99814 * 359.97438 * 29 28 27 31 31 C 1.38239 * 120.00062 * 0.02871 * 30 29 28 32 32 C 1.38235 * 120.00123 * 359.97128 * 31 30 29 33 33 H 1.09007 * 109.47134 * 274.32881 * 1 2 3 34 34 H 1.09004 * 109.47361 * 34.32319 * 1 2 3 35 35 H 1.08994 * 109.47339 * 154.32781 * 1 2 3 36 36 H 0.96993 * 120.00606 * 0.02562 * 5 3 2 37 37 H 1.09010 * 110.62963 * 0.02562 * 8 6 5 38 38 H 1.09000 * 110.62981 * 123.02061 * 8 6 5 39 39 H 1.09002 * 110.62891 * 313.39219 * 11 9 8 40 40 H 1.09001 * 110.63017 * 190.36676 * 11 9 8 41 41 H 1.08994 * 110.62823 * 241.51124 * 12 11 9 42 42 H 1.09000 * 110.62537 * 118.48949 * 12 11 9 43 43 H 0.96994 * 120.00246 * 180.02562 * 19 18 16 44 44 H 1.09000 * 117.50251 * 145.01590 * 24 2 1 45 45 H 1.09007 * 117.50226 * 359.97438 * 24 2 1 46 46 H 1.08000 * 120.00356 * 359.97438 * 28 27 25 47 47 H 1.08000 * 120.00616 * 179.70664 * 29 28 27 48 48 H 1.08001 * 120.00299 * 179.97438 * 30 29 28 49 49 H 1.08005 * 120.00087 * 180.02562 * 31 30 29 50 50 H 1.07999 * 120.00181 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2240 1.5326 0.5923 5 7 1.6009 2.3834 -0.6582 6 6 2.2331 3.7050 -0.6587 7 1 3.3189 3.6100 -0.6584 8 6 1.7581 4.5372 0.5578 9 6 1.0533 5.7658 -0.1013 10 1 0.3502 6.3022 0.5358 11 6 2.2104 6.6232 -0.6966 12 6 2.6888 5.7894 -1.9106 13 6 1.7550 4.5420 -1.8839 14 1 1.6731 3.9956 -2.8236 15 7 0.4874 5.1426 -1.3460 16 6 -0.7903 5.1269 -1.8386 17 1 -1.0051 4.6177 -2.7665 18 6 -1.8091 5.7665 -1.1459 19 7 -1.5472 6.3876 -0.0154 20 14 -3.5518 5.7459 -1.8182 21 1 -4.0218 4.3418 -1.9320 22 1 -4.4461 6.4937 -0.8983 23 1 -3.5730 6.3851 -3.1584 24 6 2.2364 -1.1211 -0.7647 25 6 2.2364 -1.1207 0.7652 26 1 3.1714 -0.8746 1.2687 27 6 1.3721 -2.1398 1.4618 28 6 1.4663 -2.3061 2.8308 29 6 0.6738 -3.2413 3.4697 30 6 -0.2134 -4.0099 2.7396 31 6 -0.3076 -3.8437 1.3704 32 6 0.4849 -2.9085 0.7316 33 1 -0.3634 0.0776 1.0248 34 1 -0.3634 0.8487 -0.5795 35 1 -0.3634 -0.9262 -0.4452 36 1 0.7657 2.2452 -1.1316 37 1 1.0526 3.9665 1.1617 38 1 2.6086 4.8573 1.1597 39 1 3.0148 6.7400 0.0298 40 1 1.8401 7.5958 -1.0207 41 1 3.7302 5.4927 -1.7864 42 1 2.5556 6.3485 -2.8368 43 1 -2.2591 6.8342 0.4688 44 1 3.1714 -0.8755 -1.2682 45 1 1.6111 -1.8591 -1.2675 46 1 2.1597 -1.7060 3.4013 47 1 0.7507 -3.3746 4.5387 48 1 -0.8323 -4.7409 3.2386 49 1 -1.0010 -4.4439 0.8000 50 1 0.4110 -2.7783 -0.3380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098013245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:58 Heat of formation + Delta-G solvation = 57.554828 kcal Electronic energy + Delta-G solvation = -29950.659444 eV Core-core repulsion = 26137.501870 eV Total energy + Delta-G solvation = -3813.157574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54032 -39.46387 -38.49690 -36.53289 -33.82184 -32.54347 -31.18683 -30.84876 -29.13483 -29.02899 -28.50292 -27.51527 -24.30601 -23.99095 -23.53667 -22.37478 -21.07581 -20.39612 -19.82807 -19.06320 -18.53475 -17.03357 -17.01999 -16.81272 -15.88450 -15.27872 -15.04091 -14.82783 -14.59512 -14.40243 -14.04327 -13.82564 -13.57519 -13.47026 -13.31770 -12.97008 -12.74646 -12.31275 -12.23237 -12.05914 -11.98659 -11.83199 -11.30330 -11.24699 -11.12891 -11.08567 -10.95764 -10.90024 -10.62269 -10.49013 -10.36246 -10.15367 -10.13119 -9.91969 -9.61739 -9.23921 -9.14547 -9.04655 -8.97271 -8.65198 -8.42622 -6.96395 -5.75924 -3.15046 1.15758 1.26482 2.78685 3.35017 3.39708 3.41372 3.45779 3.61967 4.00200 4.39092 4.45384 4.62111 4.68040 4.83903 4.84480 4.95759 5.05582 5.10282 5.12031 5.33570 5.35167 5.44955 5.54429 5.63878 5.69645 5.70416 5.80020 5.81799 5.85784 5.87417 5.91497 6.00892 6.05208 6.11645 6.14322 6.21657 6.31762 6.34671 6.37217 6.42290 6.49367 6.52674 6.60663 6.74844 6.82962 6.85501 6.95421 7.13053 7.32631 7.45394 7.78221 8.03259 8.14395 8.64863 9.05568 9.68847 10.50292 11.33165 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003135 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.217565 B = 8929.705876 C =10276.377945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.143 4.143 3 C 0.546 3.454 4 O -0.553 6.553 5 N -0.699 5.699 6 C 0.129 3.871 7 H 0.077 0.923 8 C -0.143 4.143 9 C 0.157 3.843 10 H 0.151 0.849 11 C -0.139 4.139 12 C -0.128 4.128 13 C 0.126 3.874 14 H 0.087 0.913 15 N -0.589 5.589 16 C -0.217 4.217 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C -0.144 4.144 25 C -0.085 4.085 26 H 0.125 0.875 27 C -0.044 4.044 28 C -0.110 4.110 29 C -0.119 4.119 30 C -0.127 4.127 31 C -0.119 4.119 32 C -0.118 4.118 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.254 0.746 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -16.835 1.413 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C 0.331 3.669 4 O -0.432 6.432 5 N -0.348 5.348 6 C 0.022 3.978 7 H 0.095 0.905 8 C -0.184 4.184 9 C 0.050 3.950 10 H 0.168 0.832 11 C -0.179 4.179 12 C -0.168 4.168 13 C 0.017 3.983 14 H 0.105 0.895 15 N -0.310 5.310 16 C -0.344 4.344 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.213 1.213 24 C -0.182 4.182 25 C -0.104 4.104 26 H 0.143 0.857 27 C -0.044 4.044 28 C -0.128 4.128 29 C -0.137 4.137 30 C -0.145 4.145 31 C -0.137 4.137 32 C -0.136 4.136 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.763 -16.587 1.827 17.655 hybrid contribution -1.300 -0.004 -0.519 1.400 sum 4.463 -16.591 1.308 17.231 Atomic orbital electron populations 1.21413 0.90299 1.02662 1.03009 1.21612 0.96125 0.89615 1.07250 1.19336 0.84317 0.84626 0.78600 1.90644 1.23804 1.84242 1.44513 1.45969 1.26763 1.09601 1.52447 1.22657 0.95959 0.80903 0.98246 0.90455 1.23521 0.99153 0.99352 0.96327 1.23755 0.91458 0.90843 0.88940 0.83207 1.23070 0.98819 0.99282 0.96701 1.22882 0.97324 0.97722 0.98867 1.23152 0.88209 0.92964 0.93982 0.89461 1.46486 1.02042 1.59936 1.22501 1.18948 0.82226 1.28859 1.04408 0.90478 1.24695 0.97981 1.00480 0.97278 1.69479 1.31322 1.39531 1.16298 0.86162 0.84059 0.77468 0.77826 1.21273 1.21609 1.21286 1.23246 1.02374 0.98786 0.93761 1.21150 0.99947 0.95715 0.93581 0.85733 1.19102 0.96210 0.95650 0.93476 1.21023 0.99678 0.98250 0.93859 1.21132 0.96421 0.96259 0.99854 1.21137 0.99083 0.99926 0.94340 1.21113 0.99363 0.98464 0.94790 1.21102 0.96255 0.96176 1.00040 0.91582 0.91223 0.91551 0.76132 0.92259 0.92858 0.93333 0.92622 0.93025 0.92448 0.93493 0.87903 0.87622 0.85899 0.86096 0.86292 0.86144 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.56 37.16 0.32 -1.15 16 2 C -0.14 -1.92 2.61 -155.67 -0.41 -2.33 16 3 C 0.55 9.30 7.39 -10.98 -0.08 9.22 16 4 O -0.55 -11.05 15.94 5.56 0.09 -10.96 16 5 N -0.70 -12.15 4.98 -51.37 -0.26 -12.41 16 6 C 0.13 2.41 2.76 -65.41 -0.18 2.23 16 7 H 0.08 1.46 7.29 -51.93 -0.38 1.08 16 8 C -0.14 -2.96 6.25 -24.03 -0.15 -3.11 16 9 C 0.16 3.56 4.69 -62.58 -0.29 3.26 16 10 H 0.15 3.91 5.58 -51.93 -0.29 3.62 16 11 C -0.14 -2.75 6.44 -24.24 -0.16 -2.91 16 12 C -0.13 -2.31 6.44 -24.24 -0.16 -2.47 16 13 C 0.13 2.43 5.05 -62.78 -0.32 2.11 16 14 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 15 N -0.59 -13.78 2.99 -145.55 -0.44 -14.22 16 16 C -0.22 -5.58 10.59 -15.06 -0.16 -5.74 16 17 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -25.56 10.48 55.49 0.58 -24.98 16 20 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.14 -1.58 9.22 -26.74 -0.25 -1.83 16 25 C -0.09 -1.05 5.55 -91.78 -0.51 -1.56 16 26 H 0.12 1.68 7.67 -51.93 -0.40 1.29 16 27 C -0.04 -0.51 5.05 -104.62 -0.53 -1.03 16 28 C -0.11 -1.22 9.74 -39.59 -0.39 -1.60 16 29 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 30 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 31 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 32 C -0.12 -1.19 7.78 -39.58 -0.31 -1.50 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.07 0.93 6.38 -51.93 -0.33 0.60 16 35 H 0.07 0.70 5.91 -51.93 -0.31 0.39 16 36 H 0.40 6.83 6.94 -40.82 -0.28 6.55 16 37 H 0.06 1.33 7.98 -51.92 -0.41 0.92 16 38 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 39 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.11 0.93 6.09 -51.93 -0.32 0.62 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 50 H 0.12 1.08 5.17 -52.49 -0.27 0.80 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -29.70 390.56 -11.57 -41.26 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.56 Total: 12.59 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -4.85 Total: -13.34 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.11 Total: -51.60 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.70 -11.57 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098013245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.818 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds