Wall clock time and date at job start Sat Apr 11 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 115.54796 * 2 1 4 4 O 1.21279 * 119.99561 * 145.67470 * 3 2 1 5 5 N 1.34776 * 120.00008 * 325.67202 * 3 2 1 6 6 C 1.46506 * 119.99805 * 180.02562 * 5 3 2 7 7 H 1.08997 * 110.55839 * 34.29528 * 6 5 3 8 8 C 1.54849 * 110.62525 * 271.39956 * 6 5 3 9 9 C 1.56217 * 103.27235 * 241.54488 * 8 6 5 10 10 H 1.09006 * 115.55979 * 159.50425 * 9 8 6 11 11 C 1.55834 * 105.00406 * 288.06446 * 9 8 6 12 12 C 1.54856 * 103.44732 * 71.87573 * 11 9 8 13 13 C 1.55842 * 103.44377 * 0.02562 * 12 11 9 14 14 H 1.09001 * 115.56173 * 159.56513 * 13 12 11 15 15 N 1.50235 * 101.05170 * 32.93264 * 13 12 11 16 16 C 1.36939 * 130.83571 * 126.01693 * 15 13 12 17 17 H 1.08002 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00136 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00407 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47122 * 59.99544 * 20 18 16 22 22 H 1.48500 * 109.47211 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46899 * 299.99716 * 20 18 16 24 24 C 1.52996 * 117.49779 * 214.29710 * 2 1 3 25 25 C 1.52992 * 117.50013 * 145.67500 * 2 1 3 26 26 H 1.09003 * 117.49627 * 214.99898 * 25 2 1 27 27 C 1.50696 * 117.49964 * 359.97438 * 25 2 1 28 28 C 1.38230 * 120.00346 * 240.00036 * 27 25 2 29 29 C 1.38235 * 120.00326 * 180.02562 * 28 27 25 30 30 C 1.38234 * 119.99814 * 359.97438 * 29 28 27 31 31 C 1.38239 * 120.00062 * 0.02871 * 30 29 28 32 32 C 1.38235 * 120.00123 * 359.97128 * 31 30 29 33 33 H 1.09007 * 109.47134 * 274.32881 * 1 2 3 34 34 H 1.09004 * 109.47361 * 34.32319 * 1 2 3 35 35 H 1.08994 * 109.47339 * 154.32781 * 1 2 3 36 36 H 0.96993 * 120.00606 * 0.02562 * 5 3 2 37 37 H 1.09010 * 110.62963 * 0.02562 * 8 6 5 38 38 H 1.09000 * 110.62981 * 123.02061 * 8 6 5 39 39 H 1.09002 * 110.62891 * 313.39219 * 11 9 8 40 40 H 1.09001 * 110.63017 * 190.36676 * 11 9 8 41 41 H 1.08994 * 110.62823 * 241.51124 * 12 11 9 42 42 H 1.09000 * 110.62537 * 118.48949 * 12 11 9 43 43 H 0.96994 * 120.00246 * 180.02562 * 19 18 16 44 44 H 1.09000 * 117.50251 * 145.01590 * 24 2 1 45 45 H 1.09007 * 117.50226 * 359.97438 * 24 2 1 46 46 H 1.08000 * 120.00356 * 359.97438 * 28 27 25 47 47 H 1.08000 * 120.00616 * 179.70664 * 29 28 27 48 48 H 1.08001 * 120.00299 * 179.97438 * 30 29 28 49 49 H 1.08005 * 120.00087 * 180.02562 * 31 30 29 50 50 H 1.07999 * 120.00181 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2240 1.5326 0.5923 5 7 1.6009 2.3834 -0.6582 6 6 2.2331 3.7050 -0.6587 7 1 3.3189 3.6100 -0.6584 8 6 1.7581 4.5372 0.5578 9 6 1.0533 5.7658 -0.1013 10 1 0.3502 6.3022 0.5358 11 6 2.2104 6.6232 -0.6966 12 6 2.6888 5.7894 -1.9106 13 6 1.7550 4.5420 -1.8839 14 1 1.6731 3.9956 -2.8236 15 7 0.4874 5.1426 -1.3460 16 6 -0.7903 5.1269 -1.8386 17 1 -1.0051 4.6177 -2.7665 18 6 -1.8091 5.7665 -1.1459 19 7 -1.5472 6.3876 -0.0154 20 14 -3.5518 5.7459 -1.8182 21 1 -4.0218 4.3418 -1.9320 22 1 -4.4461 6.4937 -0.8983 23 1 -3.5730 6.3851 -3.1584 24 6 2.2364 -1.1211 -0.7647 25 6 2.2364 -1.1207 0.7652 26 1 3.1714 -0.8746 1.2687 27 6 1.3721 -2.1398 1.4618 28 6 1.4663 -2.3061 2.8308 29 6 0.6738 -3.2413 3.4697 30 6 -0.2134 -4.0099 2.7396 31 6 -0.3076 -3.8437 1.3704 32 6 0.4849 -2.9085 0.7316 33 1 -0.3634 0.0776 1.0248 34 1 -0.3634 0.8487 -0.5795 35 1 -0.3634 -0.9262 -0.4452 36 1 0.7657 2.2452 -1.1316 37 1 1.0526 3.9665 1.1617 38 1 2.6086 4.8573 1.1597 39 1 3.0148 6.7400 0.0298 40 1 1.8401 7.5958 -1.0207 41 1 3.7302 5.4927 -1.7864 42 1 2.5556 6.3485 -2.8368 43 1 -2.2591 6.8342 0.4688 44 1 3.1714 -0.8755 -1.2682 45 1 1.6111 -1.8591 -1.2675 46 1 2.1597 -1.7060 3.4013 47 1 0.7507 -3.3746 4.5387 48 1 -0.8323 -4.7409 3.2386 49 1 -1.0010 -4.4439 0.8000 50 1 0.4110 -2.7783 -0.3380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098013245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:57 Heat of formation + Delta-G solvation = 43.368616 kcal Electronic energy + Delta-G solvation = -29951.274604 eV Core-core repulsion = 26137.501870 eV Total energy + Delta-G solvation = -3813.772735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70993 -40.77213 -39.71922 -37.61181 -35.34715 -34.41516 -31.96992 -31.65239 -30.96994 -30.47466 -29.80008 -28.92524 -26.15918 -24.85341 -24.72731 -23.24513 -22.40818 -21.55946 -21.37788 -20.51549 -19.97338 -18.84759 -18.07073 -17.74906 -17.31993 -16.76244 -16.19044 -16.05982 -15.91519 -15.61535 -15.48720 -15.06560 -14.89104 -14.51115 -14.29720 -14.24547 -13.75880 -13.70809 -13.62997 -13.31025 -13.21958 -12.91460 -12.87664 -12.82993 -12.78102 -12.66002 -12.14186 -12.07617 -11.97977 -11.90556 -11.87381 -11.70699 -11.48113 -11.25477 -11.09041 -10.93667 -10.89462 -10.60669 -9.94607 -9.78704 -9.46085 -8.86662 -7.74757 -5.14589 0.38691 0.52467 1.50053 1.51364 1.52776 1.57597 2.23195 2.51394 2.65700 3.08611 3.38358 3.44178 3.52000 3.60975 3.77556 3.91421 3.99576 4.01353 4.09414 4.15788 4.22946 4.26779 4.30389 4.44789 4.47583 4.59548 4.60865 4.67054 4.69499 4.70548 4.75061 4.81183 4.84613 4.87172 4.91034 5.05890 5.08384 5.15449 5.15804 5.16783 5.18942 5.22839 5.37949 5.52093 5.59967 5.60741 5.65097 5.71005 5.73666 5.90204 6.13604 6.25651 6.64140 7.06402 7.27264 7.73543 8.59558 9.32724 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003135 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.217565 B = 8929.705876 C =10276.377945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.157 4.157 3 C 0.543 3.457 4 O -0.586 6.586 5 N -0.698 5.698 6 C 0.139 3.861 7 H 0.084 0.916 8 C -0.134 4.134 9 C 0.143 3.857 10 H 0.113 0.887 11 C -0.133 4.133 12 C -0.119 4.119 13 C 0.128 3.872 14 H 0.105 0.895 15 N -0.607 5.607 16 C -0.216 4.216 17 H 0.087 0.913 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.973 3.027 21 H -0.277 1.277 22 H -0.302 1.302 23 H -0.281 1.281 24 C -0.120 4.120 25 C -0.085 4.085 26 H 0.105 0.895 27 C -0.059 4.059 28 C -0.132 4.132 29 C -0.127 4.127 30 C -0.130 4.130 31 C -0.123 4.123 32 C -0.122 4.122 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.406 0.594 37 H 0.030 0.970 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.245 0.755 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.137 0.863 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -19.287 -0.282 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.160 4.160 3 C 0.330 3.670 4 O -0.468 6.468 5 N -0.347 5.347 6 C 0.032 3.968 7 H 0.102 0.898 8 C -0.174 4.174 9 C 0.036 3.964 10 H 0.131 0.869 11 C -0.172 4.172 12 C -0.159 4.159 13 C 0.021 3.979 14 H 0.122 0.878 15 N -0.329 5.329 16 C -0.345 4.345 17 H 0.104 0.896 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.803 3.197 21 H -0.203 1.203 22 H -0.229 1.229 23 H -0.208 1.208 24 C -0.157 4.157 25 C -0.104 4.104 26 H 0.123 0.877 27 C -0.059 4.059 28 C -0.150 4.150 29 C -0.144 4.144 30 C -0.148 4.148 31 C -0.140 4.140 32 C -0.140 4.140 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.122 0.878 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.861 -19.063 0.106 19.944 hybrid contribution -1.273 0.717 0.072 1.462 sum 4.588 -18.346 0.178 18.912 Atomic orbital electron populations 1.21353 0.89618 1.03556 1.02050 1.21521 0.96450 0.88092 1.09959 1.19942 0.83843 0.85751 0.77425 1.90621 1.25410 1.84997 1.45747 1.45949 1.26835 1.09295 1.52621 1.22469 0.96197 0.81283 0.96821 0.89800 1.23382 0.98568 0.98624 0.96844 1.23576 0.91951 0.91887 0.88937 0.86945 1.22965 0.98193 0.98162 0.97871 1.22837 0.98507 0.96489 0.98031 1.23356 0.86535 0.93472 0.94577 0.87758 1.46661 1.02622 1.60524 1.23059 1.19326 0.83378 1.27491 1.04258 0.89575 1.25425 1.01310 1.01248 0.97868 1.69741 1.31509 1.40951 1.17600 0.85220 0.80100 0.77497 0.76906 1.20345 1.22875 1.20786 1.23396 1.02232 0.97151 0.92873 1.21081 0.99171 0.95397 0.94756 0.87691 1.19111 0.97028 0.96139 0.93667 1.21167 1.00464 0.99145 0.94209 1.21385 0.96248 0.95930 1.00880 1.21493 0.98759 0.99888 0.94644 1.21466 0.99276 0.98192 0.95093 1.21298 0.95864 0.96002 1.00834 0.93185 0.92253 0.88914 0.75821 0.95104 0.91828 0.91243 0.94226 0.90078 0.92037 0.94585 0.87777 0.84699 0.86537 0.84548 0.83986 0.83693 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 8.56 71.98 0.62 -2.01 16 2 C -0.16 -4.08 2.61 -52.93 -0.14 -4.22 16 3 C 0.54 18.41 7.39 87.66 0.65 19.05 16 4 O -0.59 -23.58 15.94 -3.03 -0.05 -23.63 16 5 N -0.70 -23.96 4.98 -434.83 -2.17 -26.13 16 6 C 0.14 5.09 2.76 46.62 0.13 5.22 16 7 H 0.08 3.02 7.29 -2.39 -0.02 3.00 16 8 C -0.13 -5.59 6.25 32.34 0.20 -5.39 16 9 C 0.14 6.62 4.69 46.35 0.22 6.84 16 10 H 0.11 6.16 5.58 -2.38 -0.01 6.15 16 11 C -0.13 -5.15 6.44 32.21 0.21 -4.94 16 12 C -0.12 -4.03 6.44 32.21 0.21 -3.82 16 13 C 0.13 4.74 5.05 46.24 0.23 4.97 16 14 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 15 N -0.61 -28.39 2.99 -614.40 -1.84 -30.23 16 16 C -0.22 -11.12 10.59 84.03 0.89 -10.23 16 17 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 19 N -0.95 -54.71 10.48 21.65 0.23 -54.48 16 20 Si 0.97 44.04 29.55 68.60 2.03 46.07 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.12 -2.35 9.22 30.59 0.28 -2.07 16 25 C -0.09 -2.06 5.55 -11.55 -0.06 -2.12 16 26 H 0.11 2.92 7.67 -2.39 -0.02 2.91 16 27 C -0.06 -1.30 5.05 -19.87 -0.10 -1.40 16 28 C -0.13 -2.90 9.74 22.27 0.22 -2.68 16 29 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 30 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 31 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 32 C -0.12 -2.16 7.78 22.27 0.17 -1.99 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 1.54 6.38 -2.38 -0.02 1.52 16 35 H 0.09 1.70 5.91 -2.39 -0.01 1.69 16 36 H 0.41 13.53 6.94 -92.71 -0.64 12.89 16 37 H 0.03 1.43 7.98 -2.38 -0.02 1.41 16 38 H 0.06 2.48 7.82 -2.39 -0.02 2.46 16 39 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.14 1.86 6.09 -2.38 -0.01 1.84 16 46 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 48 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 49 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 50 H 0.14 1.90 5.17 -2.91 -0.02 1.89 16 Total: -1.00 -65.95 390.56 3.37 -62.58 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.31 Total: 39.30 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.86 Total: -13.48 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.78 Total: -110.84 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -65.95 3.37 -62.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098013245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.944 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds