Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00222 * 2 1 4 4 C 1.38215 * 120.00207 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99770 * 359.69801 * 4 3 2 6 6 C 1.38206 * 119.99628 * 0.55294 * 5 4 3 7 7 C 1.50710 * 119.99945 * 179.74515 * 6 5 4 8 8 H 1.08993 * 115.56569 * 154.03460 * 7 6 5 9 9 C 1.53004 * 117.49383 * 8.34662 * 7 6 5 10 10 C 1.52997 * 59.99975 * 252.51301 * 9 7 6 11 11 H 1.09007 * 117.49949 * 107.51518 * 10 9 7 12 12 C 1.50704 * 117.49966 * 252.51052 * 10 9 7 13 13 O 1.21278 * 119.99752 * 68.61340 * 12 10 9 14 14 N 1.34769 * 120.00134 * 248.60570 * 12 10 9 15 15 C 1.46500 * 119.99903 * 179.97438 * 14 12 10 16 16 H 1.09001 * 110.68303 * 32.02319 * 15 14 12 17 17 C 1.56680 * 111.27087 * 268.36640 * 15 14 12 18 18 C 1.55844 * 103.60695 * 241.35101 * 17 15 14 19 19 H 1.08989 * 116.12760 * 159.38019 * 18 17 15 20 20 C 1.55846 * 105.06066 * 288.40963 * 18 17 15 21 21 C 1.54848 * 103.44831 * 71.82245 * 20 18 17 22 22 C 1.55845 * 103.44622 * 359.97438 * 21 20 18 23 23 H 1.09002 * 115.56037 * 158.81224 * 22 21 20 24 24 N 1.50234 * 101.05062 * 32.93689 * 22 21 20 25 25 C 1.36940 * 130.84135 * 126.00941 * 24 22 21 26 26 H 1.08000 * 119.99476 * 0.02562 * 25 24 22 27 27 C 1.38812 * 120.00557 * 179.97438 * 25 24 22 28 28 N 1.31619 * 119.99676 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 120.00086 * 180.02562 * 27 25 24 30 30 H 1.48500 * 109.47166 * 90.00515 * 29 27 25 31 31 H 1.48501 * 109.46844 * 210.00395 * 29 27 25 32 32 H 1.48497 * 109.47173 * 330.00327 * 29 27 25 33 33 C 1.38214 * 119.99936 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47304 * 270.02953 * 1 2 3 35 35 H 1.09004 * 109.46679 * 30.02532 * 1 2 3 36 36 H 1.08997 * 109.47203 * 150.02366 * 1 2 3 37 37 H 1.08005 * 120.00170 * 359.97044 * 3 2 1 38 38 H 1.07999 * 120.00113 * 179.97438 * 4 3 2 39 39 H 1.08002 * 119.99538 * 180.29840 * 5 4 3 40 40 H 1.09001 * 117.49718 * 145.01971 * 9 7 6 41 41 H 1.09002 * 117.52018 * 359.97438 * 9 7 6 42 42 H 0.97006 * 120.00234 * 0.02562 * 14 12 10 43 43 H 1.09001 * 110.35271 * 122.90160 * 17 15 14 44 44 H 1.09000 * 110.88483 * 0.05912 * 17 15 14 45 45 H 1.09005 * 110.62752 * 313.32741 * 20 18 17 46 46 H 1.09005 * 110.61968 * 190.31109 * 20 18 17 47 47 H 1.08996 * 110.62343 * 241.50616 * 21 20 18 48 48 H 1.08997 * 110.76241 * 118.55505 * 21 20 18 49 49 H 0.97002 * 120.00193 * 179.97438 * 28 27 25 50 50 H 1.07995 * 120.00306 * 0.02562 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0052 6 6 3.5806 -1.1969 0.0000 7 6 4.3341 -2.5021 0.0005 8 1 3.8019 -3.3523 0.4271 9 6 5.8494 -2.4429 0.2039 10 6 5.2750 -2.7750 -1.1747 11 1 5.3493 -2.0108 -1.9484 12 6 5.3949 -4.1988 -1.6540 13 8 4.7586 -5.0770 -1.1110 14 7 6.2090 -4.4961 -2.6860 15 6 6.3260 -5.8803 -3.1515 16 1 5.3855 -6.4137 -3.0132 17 6 7.4997 -6.6256 -2.4290 18 6 8.4617 -7.0098 -3.5933 19 1 9.4933 -7.2224 -3.3132 20 6 7.7273 -8.1458 -4.3674 21 6 6.5723 -7.4044 -5.0844 22 6 6.7656 -5.9216 -4.6455 23 1 6.3039 -5.1757 -5.2923 24 7 8.2615 -5.8495 -4.5258 25 6 9.1648 -4.9907 -5.0930 26 1 8.8233 -4.2041 -5.7496 27 6 10.5193 -5.1303 -4.8231 28 7 10.9354 -6.0885 -4.0224 29 14 11.7514 -3.9583 -5.5962 30 1 11.9481 -2.7876 -4.7041 31 1 13.0472 -4.6580 -5.7877 32 1 11.2384 -3.4977 -6.9115 33 6 2.1980 -1.1970 0.0005 34 1 -0.3634 0.0005 1.0276 35 1 -0.3633 0.8898 -0.5143 36 1 -0.3633 -0.8902 -0.5134 37 1 1.6584 2.1327 -0.0005 38 1 4.1205 2.1326 -0.0010 39 1 5.3517 0.0000 0.0097 40 1 6.3140 -3.2542 0.7643 41 1 6.3017 -1.4601 0.3369 42 1 6.7181 -3.7938 -3.1202 43 1 7.1290 -7.5191 -1.9265 44 1 7.9998 -5.9669 -1.7191 45 1 7.3345 -8.8904 -3.6750 46 1 8.3952 -8.6095 -5.0934 47 1 5.6066 -7.7814 -4.7477 48 1 6.6645 -7.5002 -6.1663 49 1 11.8819 -6.1864 -3.8341 50 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098015199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = 48.963120 kcal Electronic energy + Delta-G solvation = -29117.655833 eV Core-core repulsion = 25304.125695 eV Total energy + Delta-G solvation = -3813.530139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.29068 -39.50570 -38.52531 -36.39024 -33.72777 -32.71845 -32.52476 -31.00860 -29.12566 -28.83068 -27.90136 -27.09820 -24.61827 -24.05189 -23.54417 -22.27189 -21.17926 -19.94425 -19.82024 -19.43435 -18.63607 -17.42154 -17.00804 -16.67863 -15.83848 -15.42362 -15.12323 -14.84503 -14.54067 -14.31598 -14.06964 -13.99140 -13.78350 -13.52224 -13.31569 -12.95256 -12.58542 -12.48227 -12.34788 -12.05084 -11.99320 -11.82422 -11.45612 -11.23375 -11.13142 -11.09726 -10.95467 -10.92128 -10.73118 -10.53233 -10.47179 -10.35095 -10.11717 -9.93160 -9.68080 -9.25903 -9.18534 -8.98084 -8.92058 -8.65311 -8.42463 -6.96304 -5.76395 -3.15447 1.11445 1.20838 2.78157 3.34454 3.38102 3.39846 3.41884 3.63930 4.00805 4.38936 4.44084 4.60295 4.71274 4.75055 4.87036 4.93365 5.01869 5.12585 5.13321 5.23735 5.27493 5.33745 5.34854 5.49055 5.57564 5.63439 5.64743 5.68527 5.85012 5.87536 5.88370 5.95998 6.00606 6.03300 6.12302 6.14942 6.29368 6.30080 6.39739 6.42815 6.48926 6.49343 6.60725 6.74519 6.81716 6.82974 6.94992 7.12698 7.31729 7.45616 7.77705 8.02281 8.15645 8.63746 9.05513 9.68672 10.50026 11.32630 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.002553 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.929380 B =10966.289373 C =12137.344642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.044 4.044 7 C -0.088 4.088 8 H 0.126 0.874 9 C -0.143 4.143 10 C -0.173 4.173 11 H 0.122 0.878 12 C 0.539 3.461 13 O -0.554 6.554 14 N -0.699 5.699 15 C 0.126 3.874 16 H 0.081 0.919 17 C -0.141 4.141 18 C 0.154 3.846 19 H 0.153 0.847 20 C -0.139 4.139 21 C -0.128 4.128 22 C 0.125 3.875 23 H 0.086 0.914 24 N -0.590 5.590 25 C -0.214 4.214 26 H 0.078 0.922 27 C -0.010 4.010 28 N -0.920 5.920 29 Si 0.915 3.085 30 H -0.290 1.290 31 H -0.291 1.291 32 H -0.282 1.282 33 C -0.111 4.111 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.404 0.596 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.254 0.746 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 10.390 7.690 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.044 4.044 7 C -0.106 4.106 8 H 0.144 0.856 9 C -0.181 4.181 10 C -0.194 4.194 11 H 0.140 0.860 12 C 0.325 3.675 13 O -0.433 6.433 14 N -0.347 5.347 15 C 0.020 3.980 16 H 0.099 0.901 17 C -0.181 4.181 18 C 0.047 3.953 19 H 0.170 0.830 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.016 3.984 23 H 0.104 0.896 24 N -0.311 5.311 25 C -0.342 4.342 26 H 0.096 0.904 27 C -0.206 4.206 28 N -0.567 5.567 29 Si 0.746 3.254 30 H -0.217 1.217 31 H -0.217 1.217 32 H -0.208 1.208 33 C -0.129 4.129 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.238 0.762 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.732 9.867 7.972 20.209 hybrid contribution 0.949 0.957 -0.714 1.525 sum -14.783 10.825 7.258 19.707 Atomic orbital electron populations 1.20792 0.91217 1.02809 1.02293 1.19903 0.96058 0.93074 0.99576 1.21018 0.94307 0.97409 1.01815 1.21104 0.94275 0.97890 0.99912 1.21090 1.00171 0.91909 1.01171 1.19150 0.93292 0.93039 0.98925 1.21063 0.91932 0.96601 1.01015 0.85628 1.23107 0.95106 1.03632 0.96223 1.22364 1.06958 0.96540 0.93534 0.85964 1.19512 0.79239 0.88763 0.80015 1.90647 1.46540 1.49030 1.57087 1.45895 1.44298 1.11074 1.33460 1.22947 0.98046 0.80823 0.96179 0.90122 1.23743 0.96609 0.98597 0.99161 1.23754 0.99430 0.85010 0.87090 0.82985 1.23070 0.97135 0.98369 0.99279 1.22881 0.97481 0.96723 0.99711 1.23133 0.87268 0.95374 0.92601 0.89607 1.46508 0.98845 1.33102 1.52617 1.19000 0.86514 1.06990 1.21700 0.90426 1.24699 0.96676 0.98986 1.00231 1.69459 1.14081 1.33364 1.39830 0.86065 0.80882 0.79887 0.78589 1.21708 1.21704 1.20815 1.20889 0.93369 0.97762 1.00839 0.91201 0.91609 0.91442 0.86285 0.86047 0.85778 0.87670 0.87540 0.76163 0.92952 0.92301 0.93332 0.92637 0.93050 0.92474 0.93537 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.15 9.70 -39.58 -0.38 -1.53 16 4 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.13 -1.27 9.30 -39.58 -0.37 -1.64 16 6 C -0.04 -0.49 5.61 -104.62 -0.59 -1.08 16 7 C -0.09 -1.06 5.56 -91.76 -0.51 -1.57 16 8 H 0.13 1.66 7.67 -51.93 -0.40 1.27 16 9 C -0.14 -1.65 9.56 -26.73 -0.26 -1.91 16 10 C -0.17 -2.26 5.82 -91.77 -0.53 -2.80 16 11 H 0.12 1.44 8.14 -51.92 -0.42 1.02 16 12 C 0.54 9.03 7.61 -10.99 -0.08 8.95 16 13 O -0.55 -10.93 15.91 5.56 0.09 -10.84 16 14 N -0.70 -12.05 5.15 -50.46 -0.26 -12.31 16 15 C 0.13 2.37 2.90 -64.45 -0.19 2.18 16 16 H 0.08 1.53 7.20 -51.93 -0.37 1.16 16 17 C -0.14 -2.88 6.28 -23.23 -0.15 -3.02 16 18 C 0.15 3.48 4.72 -62.82 -0.30 3.18 16 19 H 0.15 3.96 5.52 -51.94 -0.29 3.67 16 20 C -0.14 -2.75 6.44 -24.24 -0.16 -2.91 16 21 C -0.13 -2.33 6.44 -24.24 -0.16 -2.49 16 22 C 0.12 2.43 5.01 -62.83 -0.31 2.12 16 23 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 24 N -0.59 -13.85 2.99 -145.88 -0.44 -14.28 16 25 C -0.21 -5.54 10.59 -15.06 -0.16 -5.70 16 26 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 27 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 28 N -0.92 -25.57 10.46 55.49 0.58 -24.99 16 29 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 32 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 33 C -0.11 -1.18 9.39 -39.58 -0.37 -1.55 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.10 6.02 -52.49 -0.32 0.79 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.11 1.01 6.17 -51.93 -0.32 0.69 16 42 H 0.40 6.75 8.66 -40.82 -0.35 6.40 16 43 H 0.05 1.00 7.82 -51.93 -0.41 0.60 16 44 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 45 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 46 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.83 7.79 -51.93 -0.40 0.42 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -29.87 399.78 -12.16 -42.03 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.87 Total: 11.63 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -5.26 Total: -13.46 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.12 Total: -51.58 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.87 -12.16 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098015199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.989 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds