Wall clock time and date at job start Sat Apr 11 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00194 * 2 1 4 4 C 1.38208 * 120.00032 * 180.27650 * 3 2 1 5 5 C 1.38258 * 120.00173 * 359.74596 * 4 3 2 6 6 C 1.38218 * 120.00054 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00185 * 179.76618 * 2 1 3 8 8 C 1.50704 * 119.99864 * 359.97438 * 7 2 1 9 9 H 1.08998 * 115.54568 * 334.05315 * 8 7 2 10 10 C 1.53074 * 117.49314 * 188.33146 * 8 7 2 11 11 C 1.52996 * 117.50292 * 119.72744 * 8 7 2 12 12 H 1.08999 * 117.49616 * 359.97389 * 11 8 7 13 13 C 1.50700 * 117.49798 * 214.98319 * 11 8 7 14 14 O 1.21275 * 120.00492 * 0.07819 * 13 11 8 15 15 N 1.34777 * 119.99772 * 180.08469 * 13 11 8 16 16 C 1.46497 * 119.99935 * 179.97438 * 15 13 11 17 17 H 1.08998 * 110.55673 * 36.45593 * 16 15 13 18 18 C 1.54851 * 110.63175 * 273.54595 * 16 15 13 19 19 C 1.55844 * 103.44503 * 241.35175 * 18 16 15 20 20 H 1.09001 * 115.55768 * 159.56655 * 19 18 16 21 21 C 1.55840 * 105.06383 * 288.17186 * 19 18 16 22 22 C 1.54854 * 103.44584 * 71.83029 * 21 19 18 23 23 C 1.55848 * 103.44480 * 359.97438 * 22 21 19 24 24 H 1.08998 * 115.56276 * 159.56884 * 23 22 21 25 25 N 1.50236 * 101.05329 * 32.93949 * 19 18 16 26 26 C 1.36928 * 130.84149 * 126.01084 * 25 19 18 27 27 H 1.07994 * 120.00398 * 185.02371 * 26 25 19 28 28 C 1.38815 * 120.00026 * 5.02114 * 26 25 19 29 29 N 1.31621 * 119.99967 * 8.98171 * 28 26 25 30 30 Si 1.86798 * 120.00142 * 188.98606 * 28 26 25 31 31 H 1.48493 * 109.47468 * 94.09776 * 30 28 26 32 32 H 1.48502 * 109.46985 * 214.09922 * 30 28 26 33 33 H 1.48496 * 109.47309 * 334.09355 * 30 28 26 34 34 H 1.09006 * 109.47413 * 270.23427 * 1 2 3 35 35 H 1.09006 * 109.47254 * 30.23036 * 1 2 3 36 36 H 1.09000 * 109.47331 * 150.23185 * 1 2 3 37 37 H 1.08002 * 119.99711 * 359.97438 * 3 2 1 38 38 H 1.07996 * 119.99954 * 179.71940 * 4 3 2 39 39 H 1.07997 * 120.00316 * 179.97438 * 5 4 3 40 40 H 1.07993 * 120.00359 * 179.97438 * 6 5 4 41 41 H 1.09002 * 117.51485 * 145.03691 * 10 8 7 42 42 H 1.08996 * 117.49790 * 359.97438 * 10 8 7 43 43 H 0.97001 * 120.00264 * 0.02562 * 15 13 11 44 44 H 1.09000 * 110.62589 * 122.86025 * 18 16 15 45 45 H 1.08996 * 110.75727 * 359.90998 * 18 16 15 46 46 H 1.08997 * 110.62787 * 313.33586 * 21 19 18 47 47 H 1.09004 * 110.76027 * 190.38080 * 21 19 18 48 48 H 1.09000 * 110.62852 * 118.48663 * 22 21 19 49 49 H 1.09007 * 110.62614 * 241.51041 * 22 21 19 50 50 H 0.97001 * 120.00208 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1970 -0.0004 7 6 2.1980 -1.1969 0.0049 8 6 1.4445 -2.5020 0.0108 9 1 0.4439 -2.4651 0.4413 10 6 2.2548 -3.7849 0.2128 11 6 1.6736 -3.4554 -1.1637 12 1 2.3690 -3.1385 -1.9409 13 6 0.4985 -4.2719 -1.6365 14 8 -0.5783 -4.1578 -1.0903 15 7 0.6443 -5.1291 -2.6663 16 6 -0.4979 -5.9232 -3.1256 17 1 -1.4187 -5.3439 -3.0582 18 6 -0.6161 -7.2328 -2.3077 19 6 -0.4444 -8.3481 -3.3827 20 1 -0.1499 -9.3263 -3.0025 21 6 -1.7638 -8.3182 -4.2115 22 6 -1.6457 -7.0087 -5.0295 23 6 -0.2712 -6.4253 -4.5829 24 1 0.1769 -5.7026 -5.2649 25 7 0.5094 -7.6853 -4.3356 26 6 1.7181 -8.1011 -4.8267 27 1 2.3037 -7.4413 -5.4496 28 6 2.1907 -9.3707 -4.5239 29 7 1.4075 -10.2370 -3.9169 30 14 3.9382 -9.8497 -4.9778 31 1 4.8352 -9.6050 -3.8200 32 1 3.9787 -11.2893 -5.3398 33 1 4.3900 -9.0356 -6.1347 34 1 -0.3634 0.0042 1.0277 35 1 -0.3634 0.8879 -0.5174 36 1 -0.3634 -0.8920 -0.5102 37 1 1.6583 2.1327 -0.0004 38 1 4.1203 2.1326 -0.0104 39 1 5.3516 -0.0001 -0.0112 40 1 4.1205 -2.1323 -0.0012 41 1 1.7873 -4.5924 0.7763 42 1 3.3326 -3.6845 0.3408 43 1 1.5056 -5.2207 -3.1029 44 1 -1.5955 -7.3030 -1.8346 45 1 0.1752 -7.2944 -1.5607 46 1 -2.6309 -8.2822 -3.5520 47 1 -1.8230 -9.1812 -4.8748 48 1 -1.6435 -7.2224 -6.0983 49 1 -2.4542 -6.3230 -4.7756 50 1 1.7378 -11.1241 -3.7050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098015221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:03 Heat of formation + Delta-G solvation = 51.349753 kcal Electronic energy + Delta-G solvation = -29472.156675 eV Core-core repulsion = 25658.730028 eV Total energy + Delta-G solvation = -3813.426647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.38645 -39.57271 -38.50775 -36.24063 -33.74880 -33.00116 -32.52052 -30.76421 -29.13334 -28.91062 -27.89869 -27.03938 -24.57360 -24.14652 -23.81535 -21.57456 -21.24874 -20.27153 -19.88101 -19.48915 -18.62956 -17.41746 -17.00623 -16.54069 -15.87121 -15.45855 -15.01825 -14.84221 -14.69335 -14.28341 -14.12653 -13.93361 -13.80534 -13.54169 -13.24164 -12.93249 -12.50567 -12.41040 -12.29651 -12.07195 -12.02257 -11.85818 -11.33945 -11.25785 -11.14834 -11.04377 -10.96034 -10.91140 -10.74495 -10.51715 -10.47095 -10.35679 -10.09818 -9.96285 -9.70648 -9.31897 -9.14722 -8.93182 -8.90717 -8.60981 -8.47218 -6.96236 -5.78802 -3.14829 1.11924 1.20760 2.77775 3.34634 3.38133 3.39811 3.42353 3.63227 4.00776 4.39060 4.48272 4.61937 4.71944 4.77573 4.85078 4.87152 5.06768 5.10741 5.15882 5.23153 5.32791 5.38686 5.48040 5.52385 5.58644 5.64352 5.68030 5.73547 5.84981 5.86845 5.93776 5.97895 6.04825 6.05068 6.09723 6.14691 6.29371 6.32726 6.35421 6.41735 6.47631 6.52542 6.59848 6.75045 6.81798 6.83193 6.94539 7.12091 7.31453 7.46183 7.76330 8.00417 8.10384 8.62624 9.03475 9.67804 10.50137 11.32308 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002762 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.006098 B =10133.489106 C =11467.356294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.051 4.051 8 C -0.088 4.088 9 H 0.128 0.872 10 C -0.144 4.144 11 C -0.173 4.173 12 H 0.122 0.878 13 C 0.539 3.461 14 O -0.553 6.553 15 N -0.700 5.700 16 C 0.131 3.869 17 H 0.077 0.923 18 C -0.144 4.144 19 C 0.159 3.841 20 H 0.144 0.856 21 C -0.136 4.136 22 C -0.128 4.128 23 C 0.125 3.875 24 H 0.088 0.912 25 N -0.589 5.589 26 C -0.217 4.217 27 H 0.078 0.922 28 C -0.009 4.009 29 N -0.916 5.916 30 Si 0.912 3.088 31 H -0.290 1.290 32 H -0.292 1.292 33 H -0.282 1.282 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.403 0.597 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 18.576 7.300 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.051 4.051 8 C -0.106 4.106 9 H 0.146 0.854 10 C -0.181 4.181 11 C -0.194 4.194 12 H 0.140 0.860 13 C 0.325 3.675 14 O -0.432 6.432 15 N -0.349 5.349 16 C 0.024 3.976 17 H 0.095 0.905 18 C -0.184 4.184 19 C 0.053 3.947 20 H 0.161 0.839 21 C -0.175 4.175 22 C -0.168 4.168 23 C 0.017 3.983 24 H 0.106 0.894 25 N -0.309 5.309 26 C -0.344 4.344 27 H 0.096 0.904 28 C -0.205 4.205 29 N -0.563 5.563 30 Si 0.743 3.257 31 H -0.217 1.217 32 H -0.218 1.218 33 H -0.207 1.207 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.237 0.763 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.521 18.402 7.598 19.915 hybrid contribution 1.410 -0.313 -0.566 1.551 sum 1.931 18.089 7.032 19.503 Atomic orbital electron populations 1.20877 0.91027 1.03349 1.02492 1.19760 0.96256 0.92316 0.99093 1.21017 0.94263 0.97351 1.01255 1.21116 0.94312 0.98014 1.00623 1.21096 0.99798 0.92438 1.00917 1.21093 0.93601 0.98412 1.00275 1.19035 0.93011 0.92827 1.00205 1.21084 1.00796 0.87731 1.01010 0.85437 1.23121 1.00124 0.98616 0.96266 1.22365 1.00462 1.03013 0.93569 0.86017 1.19502 0.88379 0.79622 0.80026 1.90646 1.27756 1.67988 1.56789 1.45937 1.14639 1.40613 1.33665 1.22619 0.87582 0.91117 0.96239 0.90465 1.23461 0.99807 0.96394 0.98778 1.23506 0.86220 0.97277 0.87736 0.83893 1.23033 0.98866 0.96702 0.98931 1.22881 0.96793 0.97546 0.99618 1.23140 0.92099 0.90551 0.92558 0.89431 1.46512 1.18882 1.15502 1.50038 1.18991 0.92121 0.97492 1.25846 0.90417 1.24709 0.98429 0.95715 1.01642 1.69622 1.34294 1.05659 1.46756 0.86091 0.84188 0.77609 0.77798 1.21720 1.21820 1.20724 0.91099 0.91671 0.90508 0.86128 0.86253 0.86138 0.85750 0.87674 0.87580 0.76262 0.92764 0.92387 0.93450 0.92424 0.92425 0.93072 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.32 36.00 0.34 -0.82 16 2 C -0.07 -0.79 5.88 -104.63 -0.62 -1.40 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.12 -1.17 9.30 -39.58 -0.37 -1.54 16 7 C -0.05 -0.57 5.61 -104.62 -0.59 -1.15 16 8 C -0.09 -1.05 4.66 -91.73 -0.43 -1.48 16 9 H 0.13 1.67 6.44 -51.93 -0.33 1.33 16 10 C -0.14 -1.65 9.57 -26.69 -0.26 -1.90 16 11 C -0.17 -2.23 5.82 -91.77 -0.53 -2.76 16 12 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.54 8.84 7.61 -10.99 -0.08 8.75 16 14 O -0.55 -10.65 15.98 5.56 0.09 -10.56 16 15 N -0.70 -11.80 5.10 -51.43 -0.26 -12.06 16 16 C 0.13 2.41 2.72 -65.46 -0.18 2.23 16 17 H 0.08 1.43 7.36 -51.93 -0.38 1.05 16 18 C -0.14 -2.91 6.22 -24.24 -0.15 -3.06 16 19 C 0.16 3.59 4.65 -62.80 -0.29 3.30 16 20 H 0.14 3.71 5.76 -51.93 -0.30 3.41 16 21 C -0.14 -2.71 6.44 -24.24 -0.16 -2.86 16 22 C -0.13 -2.34 6.44 -24.23 -0.16 -2.49 16 23 C 0.13 2.41 5.05 -62.80 -0.32 2.09 16 24 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 25 N -0.59 -13.75 2.98 -145.82 -0.44 -14.19 16 26 C -0.22 -5.60 10.56 -15.06 -0.16 -5.76 16 27 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 28 C -0.01 -0.23 5.47 -17.43 -0.10 -0.33 16 29 N -0.92 -25.58 10.64 55.49 0.59 -24.99 16 30 Si 0.91 21.21 29.56 -169.99 -5.03 16.19 16 31 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 32 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 33 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.08 0.85 6.65 -51.93 -0.35 0.50 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.10 6.02 -52.49 -0.32 0.78 16 41 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.11 1.00 6.18 -51.93 -0.32 0.68 16 43 H 0.40 6.53 8.63 -40.82 -0.35 6.18 16 44 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16 45 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 46 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.82 7.82 -51.92 -0.41 0.41 16 50 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -29.82 396.44 -12.04 -41.86 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.75 Total: 11.51 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.22 Total: -13.73 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.11 Total: -51.24 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.82 -12.04 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098015221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.212 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds