Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00194 * 2 1 4 4 C 1.38208 * 120.00032 * 180.27650 * 3 2 1 5 5 C 1.38258 * 120.00173 * 359.74596 * 4 3 2 6 6 C 1.38218 * 120.00054 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00185 * 179.76618 * 2 1 3 8 8 C 1.50704 * 119.99864 * 359.97438 * 7 2 1 9 9 H 1.08998 * 115.54568 * 334.05315 * 8 7 2 10 10 C 1.53074 * 117.49314 * 188.33146 * 8 7 2 11 11 C 1.52996 * 117.50292 * 119.72744 * 8 7 2 12 12 H 1.08999 * 117.49616 * 359.97389 * 11 8 7 13 13 C 1.50700 * 117.49798 * 214.98319 * 11 8 7 14 14 O 1.21275 * 120.00492 * 0.07819 * 13 11 8 15 15 N 1.34777 * 119.99772 * 180.08469 * 13 11 8 16 16 C 1.46497 * 119.99935 * 179.97438 * 15 13 11 17 17 H 1.08998 * 110.55673 * 36.45593 * 16 15 13 18 18 C 1.54851 * 110.63175 * 273.54595 * 16 15 13 19 19 C 1.55844 * 103.44503 * 241.35175 * 18 16 15 20 20 H 1.09001 * 115.55768 * 159.56655 * 19 18 16 21 21 C 1.55840 * 105.06383 * 288.17186 * 19 18 16 22 22 C 1.54854 * 103.44584 * 71.83029 * 21 19 18 23 23 C 1.55848 * 103.44480 * 359.97438 * 22 21 19 24 24 H 1.08998 * 115.56276 * 159.56884 * 23 22 21 25 25 N 1.50236 * 101.05329 * 32.93949 * 19 18 16 26 26 C 1.36928 * 130.84149 * 126.01084 * 25 19 18 27 27 H 1.07994 * 120.00398 * 185.02371 * 26 25 19 28 28 C 1.38815 * 120.00026 * 5.02114 * 26 25 19 29 29 N 1.31621 * 119.99967 * 8.98171 * 28 26 25 30 30 Si 1.86798 * 120.00142 * 188.98606 * 28 26 25 31 31 H 1.48493 * 109.47468 * 94.09776 * 30 28 26 32 32 H 1.48502 * 109.46985 * 214.09922 * 30 28 26 33 33 H 1.48496 * 109.47309 * 334.09355 * 30 28 26 34 34 H 1.09006 * 109.47413 * 270.23427 * 1 2 3 35 35 H 1.09006 * 109.47254 * 30.23036 * 1 2 3 36 36 H 1.09000 * 109.47331 * 150.23185 * 1 2 3 37 37 H 1.08002 * 119.99711 * 359.97438 * 3 2 1 38 38 H 1.07996 * 119.99954 * 179.71940 * 4 3 2 39 39 H 1.07997 * 120.00316 * 179.97438 * 5 4 3 40 40 H 1.07993 * 120.00359 * 179.97438 * 6 5 4 41 41 H 1.09002 * 117.51485 * 145.03691 * 10 8 7 42 42 H 1.08996 * 117.49790 * 359.97438 * 10 8 7 43 43 H 0.97001 * 120.00264 * 0.02562 * 15 13 11 44 44 H 1.09000 * 110.62589 * 122.86025 * 18 16 15 45 45 H 1.08996 * 110.75727 * 359.90998 * 18 16 15 46 46 H 1.08997 * 110.62787 * 313.33586 * 21 19 18 47 47 H 1.09004 * 110.76027 * 190.38080 * 21 19 18 48 48 H 1.09000 * 110.62852 * 118.48663 * 22 21 19 49 49 H 1.09007 * 110.62614 * 241.51041 * 22 21 19 50 50 H 0.97001 * 120.00208 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1970 -0.0004 7 6 2.1980 -1.1969 0.0049 8 6 1.4445 -2.5020 0.0108 9 1 0.4439 -2.4651 0.4413 10 6 2.2548 -3.7849 0.2128 11 6 1.6736 -3.4554 -1.1637 12 1 2.3690 -3.1385 -1.9409 13 6 0.4985 -4.2719 -1.6365 14 8 -0.5783 -4.1578 -1.0903 15 7 0.6443 -5.1291 -2.6663 16 6 -0.4979 -5.9232 -3.1256 17 1 -1.4187 -5.3439 -3.0582 18 6 -0.6161 -7.2328 -2.3077 19 6 -0.4444 -8.3481 -3.3827 20 1 -0.1499 -9.3263 -3.0025 21 6 -1.7638 -8.3182 -4.2115 22 6 -1.6457 -7.0087 -5.0295 23 6 -0.2712 -6.4253 -4.5829 24 1 0.1769 -5.7026 -5.2649 25 7 0.5094 -7.6853 -4.3356 26 6 1.7181 -8.1011 -4.8267 27 1 2.3037 -7.4413 -5.4496 28 6 2.1907 -9.3707 -4.5239 29 7 1.4075 -10.2370 -3.9169 30 14 3.9382 -9.8497 -4.9778 31 1 4.8352 -9.6050 -3.8200 32 1 3.9787 -11.2893 -5.3398 33 1 4.3900 -9.0356 -6.1347 34 1 -0.3634 0.0042 1.0277 35 1 -0.3634 0.8879 -0.5174 36 1 -0.3634 -0.8920 -0.5102 37 1 1.6583 2.1327 -0.0004 38 1 4.1203 2.1326 -0.0104 39 1 5.3516 -0.0001 -0.0112 40 1 4.1205 -2.1323 -0.0012 41 1 1.7873 -4.5924 0.7763 42 1 3.3326 -3.6845 0.3408 43 1 1.5056 -5.2207 -3.1029 44 1 -1.5955 -7.3030 -1.8346 45 1 0.1752 -7.2944 -1.5607 46 1 -2.6309 -8.2822 -3.5520 47 1 -1.8230 -9.1812 -4.8748 48 1 -1.6435 -7.2224 -6.0983 49 1 -2.4542 -6.3230 -4.7756 50 1 1.7378 -11.1241 -3.7050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098015221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = 37.281755 kcal Electronic energy + Delta-G solvation = -29472.766709 eV Core-core repulsion = 25658.730028 eV Total energy + Delta-G solvation = -3814.036681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53570 -40.78515 -39.79348 -37.26795 -35.26135 -34.38750 -33.71229 -31.54282 -30.97691 -30.47425 -29.45544 -27.77808 -26.22455 -25.37888 -24.81841 -22.65785 -22.31028 -21.56188 -21.22620 -20.80129 -20.20676 -18.83844 -18.49157 -17.48966 -17.18340 -16.76964 -16.36130 -15.99232 -15.79359 -15.71213 -15.47031 -15.10755 -14.95472 -14.67860 -14.44000 -13.94811 -13.77833 -13.66784 -13.53561 -13.15837 -13.05043 -12.95025 -12.88706 -12.81451 -12.76707 -12.68924 -12.10246 -12.06769 -11.94004 -11.90127 -11.86379 -11.72942 -11.61036 -11.40958 -11.24871 -10.99685 -10.81866 -10.65842 -9.94766 -9.65454 -9.37747 -8.86422 -7.78166 -5.14469 0.37727 0.50136 1.49613 1.50271 1.54113 1.58431 2.23026 2.51058 2.69317 3.09568 3.36801 3.43227 3.55702 3.71265 3.84460 3.95268 4.01067 4.03542 4.08106 4.14196 4.21188 4.26331 4.27174 4.44984 4.46571 4.48197 4.62781 4.65577 4.68758 4.74638 4.78426 4.79873 4.82493 4.89098 4.93997 4.98721 5.07960 5.11845 5.15685 5.18890 5.19969 5.32458 5.37732 5.52752 5.60613 5.62309 5.64784 5.72315 5.77525 5.89305 6.14324 6.21951 6.66192 7.04599 7.29778 7.72377 8.59385 9.31807 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002762 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.006098 B =10133.489106 C =11467.356294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.124 4.124 7 C -0.069 4.069 8 C -0.079 4.079 9 H 0.111 0.889 10 C -0.136 4.136 11 C -0.179 4.179 12 H 0.139 0.861 13 C 0.538 3.462 14 O -0.584 6.584 15 N -0.700 5.700 16 C 0.142 3.858 17 H 0.084 0.916 18 C -0.133 4.133 19 C 0.146 3.854 20 H 0.106 0.894 21 C -0.130 4.130 22 C -0.120 4.120 23 C 0.127 3.873 24 H 0.104 0.896 25 N -0.607 5.607 26 C -0.215 4.215 27 H 0.086 0.914 28 C -0.067 4.067 29 N -0.947 5.947 30 Si 0.972 3.028 31 H -0.292 1.292 32 H -0.303 1.303 33 H -0.268 1.268 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.407 0.593 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 21.366 7.008 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.148 4.148 6 C -0.142 4.142 7 C -0.069 4.069 8 C -0.097 4.097 9 H 0.129 0.871 10 C -0.173 4.173 11 C -0.200 4.200 12 H 0.156 0.844 13 C 0.326 3.674 14 O -0.465 6.465 15 N -0.348 5.348 16 C 0.036 3.964 17 H 0.102 0.898 18 C -0.174 4.174 19 C 0.040 3.960 20 H 0.123 0.877 21 C -0.169 4.169 22 C -0.160 4.160 23 C 0.020 3.980 24 H 0.122 0.878 25 N -0.329 5.329 26 C -0.344 4.344 27 H 0.104 0.896 28 C -0.260 4.260 29 N -0.596 5.596 30 Si 0.802 3.198 31 H -0.219 1.219 32 H -0.230 1.230 33 H -0.193 1.193 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.112 0.888 42 H 0.149 0.851 43 H 0.242 0.758 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.508 21.231 7.294 22.500 hybrid contribution 1.067 -1.110 -0.436 1.600 sum 2.575 20.122 6.858 21.414 Atomic orbital electron populations 1.20841 0.90865 1.02965 1.02739 1.19966 0.96670 0.92819 0.99631 1.21288 0.94839 0.97600 1.00802 1.21474 0.94282 0.99049 0.99384 1.21414 1.01004 0.92171 1.00211 1.21276 0.93212 0.99455 1.00210 1.19058 0.93607 0.92379 1.01823 1.20965 1.00306 0.88539 0.99906 0.87118 1.23217 1.01418 0.98025 0.94646 1.22324 0.99635 1.03433 0.94580 0.84363 1.20045 0.88937 0.79243 0.79203 1.90627 1.29310 1.68946 1.57623 1.45910 1.14384 1.40516 1.33994 1.22398 0.88503 0.90332 0.95204 0.89822 1.23316 0.99555 0.96723 0.97787 1.23339 0.87480 0.96345 0.88869 0.87680 1.22934 0.98209 0.97031 0.98756 1.22839 0.97038 0.96830 0.99275 1.23338 0.92087 0.89315 0.93283 0.87828 1.46686 1.18816 1.17068 1.50301 1.19351 0.93045 0.97310 1.24669 0.89628 1.25436 1.01619 0.96164 1.02749 1.69853 1.35585 1.05564 1.48620 0.85140 0.80427 0.76554 0.77685 1.21902 1.23028 1.19283 0.90598 0.90315 0.92517 0.84314 0.83864 0.84049 0.84736 0.88790 0.85150 0.75801 0.91673 0.94591 0.91240 0.94551 0.92358 0.90029 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.32 71.23 0.66 -1.52 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.11 9.70 22.27 0.22 -1.90 16 4 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 5 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 6 C -0.12 -2.24 9.30 22.27 0.21 -2.04 16 7 C -0.07 -1.45 5.61 -19.86 -0.11 -1.56 16 8 C -0.08 -1.84 4.66 -11.52 -0.05 -1.89 16 9 H 0.11 2.96 6.44 -2.39 -0.02 2.95 16 10 C -0.14 -2.98 9.57 30.62 0.29 -2.69 16 11 C -0.18 -4.44 5.82 -11.54 -0.07 -4.50 16 12 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 13 C 0.54 17.37 7.61 87.66 0.67 18.04 16 14 O -0.58 -22.47 15.98 -3.01 -0.05 -22.52 16 15 N -0.70 -22.96 5.10 -435.00 -2.22 -25.18 16 16 C 0.14 5.07 2.72 46.59 0.13 5.19 16 17 H 0.08 2.94 7.36 -2.39 -0.02 2.92 16 18 C -0.13 -5.39 6.22 32.21 0.20 -5.19 16 19 C 0.15 6.71 4.65 46.23 0.21 6.92 16 20 H 0.11 5.71 5.76 -2.39 -0.01 5.70 16 21 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 22 C -0.12 -4.12 6.44 32.21 0.21 -3.91 16 23 C 0.13 4.68 5.05 46.21 0.23 4.91 16 24 H 0.10 3.49 8.14 -2.39 -0.02 3.48 16 25 N -0.61 -28.29 2.98 -615.26 -1.84 -30.13 16 26 C -0.21 -11.09 10.56 84.04 0.89 -10.20 16 27 H 0.09 4.17 7.84 -2.91 -0.02 4.15 16 28 C -0.07 -3.61 5.47 84.86 0.46 -3.15 16 29 N -0.95 -54.68 10.64 21.65 0.23 -54.45 16 30 Si 0.97 44.11 29.56 68.60 2.03 46.14 16 31 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 32 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 33 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 36 H 0.06 1.27 6.65 -2.39 -0.02 1.25 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.13 2.04 6.02 -2.91 -0.02 2.03 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.13 2.19 6.18 -2.39 -0.01 2.17 16 43 H 0.41 12.75 8.63 -92.71 -0.80 11.95 16 44 H 0.06 2.45 7.82 -2.39 -0.02 2.43 16 45 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 46 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.08 2.33 7.82 -2.38 -0.02 2.32 16 50 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -65.38 396.44 2.99 -62.38 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.15 Total: 37.47 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.69 Total: -13.72 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.83 Total: -109.76 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.38 2.99 -62.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098015221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.665 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds