Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.73382 * 2 1 4 4 C 1.37926 * 120.09161 * 179.70767 * 3 2 1 5 5 C 1.39491 * 119.77332 * 0.57883 * 4 3 2 6 6 C 1.47843 * 120.04691 * 179.70896 * 5 4 3 7 7 O 1.21552 * 120.00476 * 179.72641 * 6 5 4 8 8 N 1.34779 * 119.99952 * 359.72423 * 6 5 4 9 9 C 1.46497 * 120.00191 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.68497 * 32.01511 * 9 8 6 11 11 C 1.54854 * 110.62651 * 269.02852 * 9 8 6 12 12 C 1.55850 * 103.44570 * 241.50943 * 11 9 8 13 13 H 1.09001 * 115.56251 * 158.81178 * 12 11 9 14 14 C 1.55842 * 105.06059 * 288.17366 * 12 11 9 15 15 C 1.55878 * 103.53093 * 72.43096 * 14 12 11 16 16 C 1.55841 * 110.62670 * 155.00172 * 9 8 6 17 17 H 1.08996 * 115.56497 * 319.67823 * 16 9 8 18 18 N 1.50236 * 101.04628 * 32.93725 * 12 11 9 19 19 C 1.36941 * 130.83624 * 126.01511 * 18 12 11 20 20 H 1.08001 * 119.99894 * 185.54442 * 19 18 12 21 21 C 1.38817 * 119.99890 * 5.54506 * 19 18 12 22 22 N 1.31617 * 120.00116 * 9.34844 * 21 19 18 23 23 Si 1.86799 * 119.99534 * 189.35034 * 21 19 18 24 24 H 1.48494 * 109.47414 * 94.00870 * 23 21 19 25 25 H 1.48507 * 109.46623 * 214.00510 * 23 21 19 26 26 H 1.48495 * 109.47418 * 334.00146 * 23 21 19 27 27 C 1.39778 * 119.91105 * 359.43336 * 5 4 3 28 28 C 1.37971 * 119.76282 * 0.28322 * 27 5 4 29 29 C 1.51393 * 109.76573 * 179.97438 * 28 27 5 30 30 C 1.54348 * 105.16597 * 17.19472 * 29 28 27 31 31 C 1.51351 * 130.41068 * 180.28266 * 27 5 4 32 32 H 1.09006 * 109.47282 * 269.97781 * 1 2 3 33 33 H 1.08995 * 109.47226 * 29.97567 * 1 2 3 34 34 H 1.09000 * 109.46703 * 149.98035 * 1 2 3 35 35 H 1.07997 * 119.95045 * 359.97438 * 3 2 1 36 36 H 1.08005 * 120.11734 * 180.29385 * 4 3 2 37 37 H 0.97000 * 119.99974 * 0.02562 * 8 6 5 38 38 H 1.09001 * 110.62665 * 123.01802 * 11 9 8 39 39 H 1.09004 * 110.62692 * 359.97438 * 11 9 8 40 40 H 1.09001 * 110.62492 * 190.31329 * 14 12 11 41 41 H 1.08994 * 110.62877 * 313.17279 * 14 12 11 42 42 H 1.09001 * 110.09634 * 241.13739 * 15 14 12 43 43 H 1.09000 * 111.60307 * 117.80375 * 15 14 12 44 44 H 0.96996 * 120.00215 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.30568 * 136.11928 * 29 28 27 46 46 H 1.09003 * 110.30653 * 258.17468 * 29 28 27 47 47 H 1.08995 * 110.83142 * 91.89608 * 30 29 28 48 48 H 1.08999 * 110.83081 * 215.26480 * 30 29 28 49 49 H 1.09007 * 110.31004 * 281.75931 * 31 27 5 50 50 H 1.08998 * 110.30783 * 43.91458 * 31 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2006 0.0000 4 6 3.5720 1.2092 0.0061 5 6 4.2723 0.0028 0.0000 6 6 5.7507 0.0050 0.0000 7 8 6.3601 -1.0467 -0.0003 8 7 6.4228 1.1733 0.0002 9 6 7.8878 1.1755 -0.0004 10 1 8.2739 0.3118 -0.5415 11 6 8.4338 1.2003 1.4485 12 6 9.2362 2.5350 1.5106 13 1 9.4053 2.9360 2.5099 14 6 10.5092 2.2827 0.6478 15 6 9.9641 2.2732 -0.8125 16 6 8.4345 2.4985 -0.6164 17 1 7.8977 2.8675 -1.4903 18 7 8.4280 3.4000 0.5855 19 6 7.8600 4.6310 0.7785 20 1 7.2321 5.0620 0.0128 21 6 8.0914 5.3249 1.9583 22 7 8.9962 4.8913 2.8102 23 14 7.1183 6.8738 2.3369 24 1 5.9356 6.5256 3.1646 25 1 7.9786 7.8293 3.0802 26 1 6.6676 7.4981 1.0672 27 6 3.5743 -1.2082 -0.0002 28 6 2.1946 -1.2036 -0.0004 29 6 1.6778 -2.6266 -0.0012 30 6 2.8776 -3.4922 0.4388 31 6 4.0829 -2.6338 -0.0004 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6476 2.1329 -0.0004 36 1 4.1081 2.1468 0.0109 37 1 5.9365 2.0126 0.0008 38 1 9.0907 0.3488 1.6259 39 1 7.6146 1.2114 2.1675 40 1 11.2258 3.0943 0.7742 41 1 10.9645 1.3266 0.9056 42 1 10.1532 1.3051 -1.2765 43 1 10.3974 3.0768 -1.4079 44 1 9.1581 5.3763 3.6344 45 1 0.8561 -2.7311 0.7072 46 1 1.3519 -2.9101 -1.0020 47 1 2.8769 -3.6351 1.5193 48 1 2.8730 -4.4522 -0.0774 49 1 4.4063 -2.9200 -1.0012 50 1 4.9035 -2.7427 0.7087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098475382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 22.043510 kcal Electronic energy + Delta-G solvation = -30110.236618 eV Core-core repulsion = 26295.539158 eV Total energy + Delta-G solvation = -3814.697461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.62617 -39.45695 -38.06119 -35.92840 -33.77778 -33.07372 -32.44929 -29.14714 -29.09947 -28.94506 -28.12491 -27.99731 -26.42632 -24.19198 -22.81240 -21.70017 -21.28244 -20.48818 -19.79795 -19.43875 -18.66264 -17.11165 -16.93803 -16.30066 -15.70363 -15.34016 -14.90003 -14.83704 -14.51942 -14.37299 -13.91874 -13.75675 -13.68272 -13.37357 -13.31513 -12.81670 -12.74327 -12.41369 -12.19429 -12.04766 -11.83490 -11.78947 -11.36253 -11.25385 -11.19674 -11.11554 -11.11428 -10.95472 -10.93034 -10.89641 -10.47963 -10.34935 -10.09178 -9.92718 -9.65914 -9.29664 -9.11588 -8.89555 -8.71712 -8.58342 -8.38037 -6.94918 -5.78416 -3.14283 0.89827 1.31441 3.05356 3.34886 3.39848 3.42610 3.61866 3.91145 4.30218 4.39744 4.47275 4.73637 4.87253 4.92448 4.99585 5.06600 5.12740 5.15455 5.32192 5.37357 5.40244 5.52923 5.60431 5.63114 5.65531 5.69525 5.69968 5.77433 5.87144 5.87568 6.03379 6.07538 6.09893 6.12172 6.15241 6.16557 6.28617 6.29988 6.41416 6.44515 6.47875 6.54973 6.61069 6.75911 6.82919 6.86761 6.96184 7.13970 7.33021 7.46664 7.76984 8.02201 8.12224 8.63777 9.03834 9.68423 10.51111 11.32764 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.003407 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.790284 B = 8216.622014 C = 9854.188395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.125 4.125 6 C 0.552 3.448 7 O -0.547 6.547 8 N -0.701 5.701 9 C 0.131 3.869 10 H 0.081 0.919 11 C -0.145 4.145 12 C 0.158 3.842 13 H 0.145 0.855 14 C -0.134 4.134 15 C -0.127 4.127 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.591 5.591 19 C -0.217 4.217 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.031 4.031 28 C -0.115 4.115 29 C -0.077 4.077 30 C -0.124 4.124 31 C -0.079 4.079 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.401 0.599 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 -12.405 -6.136 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.128 4.128 6 C 0.339 3.661 7 O -0.427 6.427 8 N -0.351 5.351 9 C 0.025 3.975 10 H 0.099 0.901 11 C -0.186 4.186 12 C 0.051 3.949 13 H 0.162 0.838 14 C -0.174 4.174 15 C -0.167 4.167 16 C 0.015 3.985 17 H 0.104 0.896 18 N -0.312 5.312 19 C -0.345 4.345 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.032 4.032 28 C -0.115 4.115 29 C -0.114 4.114 30 C -0.161 4.161 31 C -0.115 4.115 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.237 0.763 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.988 -12.833 -5.967 19.209 hybrid contribution -0.632 1.468 0.216 1.613 sum -13.620 -11.364 -5.751 18.647 Atomic orbital electron populations 1.20817 0.91246 1.02774 1.02415 1.19603 0.95933 0.91857 0.98025 1.20863 0.93894 0.97414 1.02663 1.21313 0.94496 0.97129 0.96897 1.19657 0.93247 0.93034 1.06847 1.18271 0.86793 0.84237 0.76782 1.90697 1.69763 1.31242 1.50986 1.45962 1.08018 1.07995 1.73110 1.22601 0.78038 0.99077 0.97798 0.90085 1.23484 1.00137 0.99601 0.95348 1.23546 0.87556 0.86352 0.97459 0.83806 1.23190 0.99654 0.99218 0.95318 1.23027 0.96913 0.99387 0.97396 1.23166 0.94435 0.89459 0.91420 0.89588 1.46554 1.60565 1.16310 1.07728 1.18991 1.22119 0.92060 1.01331 0.90440 1.24707 0.99047 0.98882 0.97812 1.69614 1.34059 1.40775 1.11805 0.86107 0.79258 0.82454 0.77966 1.21710 1.21799 1.20711 1.20543 0.93410 0.94454 0.94749 1.20401 0.93748 0.94690 1.02632 1.21002 0.98371 0.90239 1.01766 1.22359 0.94100 0.98154 1.01487 1.21079 0.98179 0.89262 1.03027 0.91000 0.91395 0.91517 0.85323 0.85046 0.76296 0.92663 0.92364 0.92512 0.93345 0.93141 0.92282 0.93584 0.90886 0.90389 0.91025 0.90573 0.89965 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.86 36.01 0.36 -0.56 16 2 C -0.05 -0.60 5.89 -104.47 -0.62 -1.21 16 3 C -0.13 -1.53 9.67 -39.69 -0.38 -1.91 16 4 C -0.08 -1.08 9.54 -39.23 -0.37 -1.46 16 5 C -0.12 -1.93 5.88 -104.92 -0.62 -2.54 16 6 C 0.55 9.81 7.77 -12.33 -0.10 9.72 16 7 O -0.55 -10.89 14.35 5.32 0.08 -10.81 16 8 N -0.70 -12.41 5.02 -52.34 -0.26 -12.68 16 9 C 0.13 2.47 2.82 -65.44 -0.18 2.29 16 10 H 0.08 1.53 7.26 -51.93 -0.38 1.16 16 11 C -0.15 -2.97 6.23 -24.23 -0.15 -3.12 16 12 C 0.16 3.58 4.67 -62.80 -0.29 3.29 16 13 H 0.14 3.75 5.73 -51.93 -0.30 3.46 16 14 C -0.13 -2.70 6.46 -23.68 -0.15 -2.85 16 15 C -0.13 -2.34 6.53 -23.67 -0.15 -2.50 16 16 C 0.12 2.42 5.01 -62.80 -0.31 2.11 16 17 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 18 N -0.59 -13.92 2.98 -145.81 -0.43 -14.35 16 19 C -0.22 -5.63 10.56 -15.06 -0.16 -5.79 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 21 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 22 N -0.92 -25.64 10.64 55.49 0.59 -25.05 16 23 Si 0.91 21.25 29.56 -169.99 -5.03 16.22 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.03 -0.43 6.03 -103.82 -0.63 -1.06 16 28 C -0.11 -1.37 6.00 -104.24 -0.63 -1.99 16 29 C -0.08 -0.70 6.09 -26.84 -0.16 -0.86 16 30 C -0.12 -1.16 7.08 -25.32 -0.18 -1.34 16 31 C -0.08 -1.00 5.58 -26.86 -0.15 -1.15 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.69 6.40 -52.48 -0.34 1.35 16 37 H 0.40 6.85 6.68 -40.82 -0.27 6.57 16 38 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 39 H 0.06 1.28 7.98 -51.93 -0.41 0.86 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 42 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.09 1.30 7.19 -51.93 -0.37 0.93 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -29.97 388.98 -12.06 -42.02 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.88 Total: 10.05 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -4.98 Total: -11.27 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.11 Total: -52.08 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.97 -12.06 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098475382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.066 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds