Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.73382 * 2 1 4 4 C 1.37926 * 120.09161 * 179.70767 * 3 2 1 5 5 C 1.39491 * 119.77332 * 0.57883 * 4 3 2 6 6 C 1.47843 * 120.04691 * 179.70896 * 5 4 3 7 7 O 1.21552 * 120.00476 * 179.72641 * 6 5 4 8 8 N 1.34779 * 119.99952 * 359.72423 * 6 5 4 9 9 C 1.46497 * 120.00191 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.68497 * 32.01511 * 9 8 6 11 11 C 1.54854 * 110.62651 * 269.02852 * 9 8 6 12 12 C 1.55850 * 103.44570 * 241.50943 * 11 9 8 13 13 H 1.09001 * 115.56251 * 158.81178 * 12 11 9 14 14 C 1.55842 * 105.06059 * 288.17366 * 12 11 9 15 15 C 1.55878 * 103.53093 * 72.43096 * 14 12 11 16 16 C 1.55841 * 110.62670 * 155.00172 * 9 8 6 17 17 H 1.08996 * 115.56497 * 319.67823 * 16 9 8 18 18 N 1.50236 * 101.04628 * 32.93725 * 12 11 9 19 19 C 1.36941 * 130.83624 * 126.01511 * 18 12 11 20 20 H 1.08001 * 119.99894 * 185.54442 * 19 18 12 21 21 C 1.38817 * 119.99890 * 5.54506 * 19 18 12 22 22 N 1.31617 * 120.00116 * 9.34844 * 21 19 18 23 23 Si 1.86799 * 119.99534 * 189.35034 * 21 19 18 24 24 H 1.48494 * 109.47414 * 94.00870 * 23 21 19 25 25 H 1.48507 * 109.46623 * 214.00510 * 23 21 19 26 26 H 1.48495 * 109.47418 * 334.00146 * 23 21 19 27 27 C 1.39778 * 119.91105 * 359.43336 * 5 4 3 28 28 C 1.37971 * 119.76282 * 0.28322 * 27 5 4 29 29 C 1.51393 * 109.76573 * 179.97438 * 28 27 5 30 30 C 1.54348 * 105.16597 * 17.19472 * 29 28 27 31 31 C 1.51351 * 130.41068 * 180.28266 * 27 5 4 32 32 H 1.09006 * 109.47282 * 269.97781 * 1 2 3 33 33 H 1.08995 * 109.47226 * 29.97567 * 1 2 3 34 34 H 1.09000 * 109.46703 * 149.98035 * 1 2 3 35 35 H 1.07997 * 119.95045 * 359.97438 * 3 2 1 36 36 H 1.08005 * 120.11734 * 180.29385 * 4 3 2 37 37 H 0.97000 * 119.99974 * 0.02562 * 8 6 5 38 38 H 1.09001 * 110.62665 * 123.01802 * 11 9 8 39 39 H 1.09004 * 110.62692 * 359.97438 * 11 9 8 40 40 H 1.09001 * 110.62492 * 190.31329 * 14 12 11 41 41 H 1.08994 * 110.62877 * 313.17279 * 14 12 11 42 42 H 1.09001 * 110.09634 * 241.13739 * 15 14 12 43 43 H 1.09000 * 111.60307 * 117.80375 * 15 14 12 44 44 H 0.96996 * 120.00215 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.30568 * 136.11928 * 29 28 27 46 46 H 1.09003 * 110.30653 * 258.17468 * 29 28 27 47 47 H 1.08995 * 110.83142 * 91.89608 * 30 29 28 48 48 H 1.08999 * 110.83081 * 215.26480 * 30 29 28 49 49 H 1.09007 * 110.31004 * 281.75931 * 31 27 5 50 50 H 1.08998 * 110.30783 * 43.91458 * 31 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2006 0.0000 4 6 3.5720 1.2092 0.0061 5 6 4.2723 0.0028 0.0000 6 6 5.7507 0.0050 0.0000 7 8 6.3601 -1.0467 -0.0003 8 7 6.4228 1.1733 0.0002 9 6 7.8878 1.1755 -0.0004 10 1 8.2739 0.3118 -0.5415 11 6 8.4338 1.2003 1.4485 12 6 9.2362 2.5350 1.5106 13 1 9.4053 2.9360 2.5099 14 6 10.5092 2.2827 0.6478 15 6 9.9641 2.2732 -0.8125 16 6 8.4345 2.4985 -0.6164 17 1 7.8977 2.8675 -1.4903 18 7 8.4280 3.4000 0.5855 19 6 7.8600 4.6310 0.7785 20 1 7.2321 5.0620 0.0128 21 6 8.0914 5.3249 1.9583 22 7 8.9962 4.8913 2.8102 23 14 7.1183 6.8738 2.3369 24 1 5.9356 6.5256 3.1646 25 1 7.9786 7.8293 3.0802 26 1 6.6676 7.4981 1.0672 27 6 3.5743 -1.2082 -0.0002 28 6 2.1946 -1.2036 -0.0004 29 6 1.6778 -2.6266 -0.0012 30 6 2.8776 -3.4922 0.4388 31 6 4.0829 -2.6338 -0.0004 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6476 2.1329 -0.0004 36 1 4.1081 2.1468 0.0109 37 1 5.9365 2.0126 0.0008 38 1 9.0907 0.3488 1.6259 39 1 7.6146 1.2114 2.1675 40 1 11.2258 3.0943 0.7742 41 1 10.9645 1.3266 0.9056 42 1 10.1532 1.3051 -1.2765 43 1 10.3974 3.0768 -1.4079 44 1 9.1581 5.3763 3.6344 45 1 0.8561 -2.7311 0.7072 46 1 1.3519 -2.9101 -1.0020 47 1 2.8769 -3.6351 1.5193 48 1 2.8730 -4.4522 -0.0774 49 1 4.4063 -2.9200 -1.0012 50 1 4.9035 -2.7427 0.7087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098475382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = 7.522168 kcal Electronic energy + Delta-G solvation = -30110.866311 eV Core-core repulsion = 26295.539158 eV Total energy + Delta-G solvation = -3815.327153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74747 -40.89625 -39.49129 -36.82838 -35.27714 -34.46755 -33.90339 -30.97134 -30.51071 -30.04687 -29.57741 -28.85601 -27.51804 -26.08688 -23.91217 -22.89603 -22.27475 -21.74081 -21.44085 -20.74331 -20.23169 -18.84626 -18.28583 -17.53968 -16.81679 -16.60224 -16.50952 -16.00486 -15.80981 -15.71312 -15.50346 -15.11383 -14.74657 -14.46167 -14.31082 -14.09762 -13.78470 -13.70465 -13.61341 -13.09635 -13.00663 -12.94014 -12.83705 -12.77878 -12.72188 -12.58976 -12.29749 -12.12380 -12.05853 -11.96875 -11.92860 -11.90963 -11.74176 -11.71304 -11.27602 -10.98829 -10.82066 -10.65562 -10.04502 -9.56221 -9.51321 -8.87181 -7.79485 -5.15820 -0.14827 0.35250 1.48409 1.49128 1.57324 1.85810 2.25548 2.49932 2.80203 3.35581 3.41909 3.43888 3.61840 3.74978 3.92110 3.99728 4.05735 4.15050 4.17023 4.18474 4.24283 4.35356 4.44213 4.44565 4.50173 4.61291 4.66903 4.72476 4.78413 4.80583 4.85500 4.87379 4.89415 4.93180 5.03041 5.05989 5.09843 5.13339 5.17333 5.18539 5.26399 5.31160 5.34593 5.36311 5.49573 5.51301 5.58717 5.59961 5.70541 5.87344 5.96111 6.21606 6.61378 7.03060 7.23895 7.71021 8.58179 9.30589 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.003407 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.790284 B = 8216.622014 C = 9854.188395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.154 4.154 6 C 0.550 3.450 7 O -0.575 6.575 8 N -0.701 5.701 9 C 0.142 3.858 10 H 0.087 0.913 11 C -0.135 4.135 12 C 0.145 3.855 13 H 0.108 0.892 14 C -0.128 4.128 15 C -0.118 4.118 16 C 0.126 3.874 17 H 0.100 0.900 18 N -0.609 5.609 19 C -0.217 4.217 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.946 5.946 23 Si 0.971 3.029 24 H -0.292 1.292 25 H -0.302 1.302 26 H -0.267 1.267 27 C -0.054 4.054 28 C -0.118 4.118 29 C -0.072 4.072 30 C -0.116 4.116 31 C -0.080 4.080 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.245 0.755 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.212 -13.387 -7.729 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.157 4.157 6 C 0.339 3.661 7 O -0.457 6.457 8 N -0.351 5.351 9 C 0.036 3.964 10 H 0.105 0.895 11 C -0.175 4.175 12 C 0.038 3.962 13 H 0.125 0.875 14 C -0.167 4.167 15 C -0.158 4.158 16 C 0.019 3.981 17 H 0.118 0.882 18 N -0.331 5.331 19 C -0.345 4.345 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.220 1.220 25 H -0.229 1.229 26 H -0.192 1.192 27 C -0.055 4.055 28 C -0.118 4.118 29 C -0.109 4.109 30 C -0.154 4.154 31 C -0.117 4.117 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.240 0.760 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.096 0.904 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.820 -13.825 -7.595 22.341 hybrid contribution 0.201 1.723 0.699 1.870 sum -15.619 -12.102 -6.897 20.928 Atomic orbital electron populations 1.20902 0.88446 1.04230 1.03499 1.20052 0.97939 0.91196 0.95815 1.21198 0.93146 0.98964 1.01826 1.21399 0.95586 0.96438 0.97376 1.19619 0.91746 0.94559 1.09795 1.18708 0.88003 0.83602 0.75761 1.90667 1.70635 1.32012 1.52345 1.45920 1.07545 1.08312 1.73282 1.22410 0.78832 0.98819 0.96360 0.89482 1.23343 0.99279 0.98852 0.96024 1.23387 0.89360 0.87060 0.96362 0.87489 1.23090 0.97947 0.99603 0.96050 1.22982 0.95442 1.01146 0.96241 1.23350 0.95591 0.88631 0.90574 0.88244 1.46730 1.60676 1.16145 1.09536 1.19350 1.21328 0.92680 1.01179 0.89687 1.25436 1.00380 1.01866 0.98167 1.69842 1.35799 1.41898 1.11972 0.85149 0.77565 0.79273 0.77890 1.21954 1.22892 1.19193 1.20852 0.94824 0.94479 0.95335 1.20822 0.92820 0.96581 1.01573 1.21079 0.98483 0.87965 1.03356 1.22368 0.92531 0.98624 1.01839 1.21085 0.98886 0.89691 1.02083 0.89879 0.90091 0.90029 0.82947 0.85147 0.76018 0.91364 0.94777 0.94556 0.91031 0.90109 0.92119 0.94541 0.88776 0.88621 0.90896 0.88346 0.90447 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.86 71.24 0.70 -0.65 16 2 C -0.05 -0.97 5.89 -19.77 -0.12 -1.09 16 3 C -0.13 -2.89 9.67 22.20 0.21 -2.67 16 4 C -0.09 -2.40 9.54 22.50 0.21 -2.19 16 5 C -0.15 -4.84 5.88 -20.06 -0.12 -4.95 16 6 C 0.55 20.06 7.77 86.79 0.67 20.73 16 7 O -0.57 -23.54 14.35 -3.88 -0.06 -23.60 16 8 N -0.70 -25.15 5.02 -437.79 -2.20 -27.35 16 9 C 0.14 5.32 2.82 46.61 0.13 5.46 16 10 H 0.09 3.20 7.26 -2.39 -0.02 3.18 16 11 C -0.13 -5.60 6.23 32.21 0.20 -5.40 16 12 C 0.14 6.76 4.67 46.23 0.22 6.98 16 13 H 0.11 5.89 5.73 -2.39 -0.01 5.87 16 14 C -0.13 -5.09 6.46 32.57 0.21 -4.88 16 15 C -0.12 -4.16 6.53 32.58 0.21 -3.95 16 16 C 0.13 4.81 5.01 46.23 0.23 5.04 16 17 H 0.10 3.53 8.14 -2.39 -0.02 3.52 16 18 N -0.61 -28.99 2.98 -615.23 -1.83 -30.82 16 19 C -0.22 -11.33 10.56 84.03 0.89 -10.44 16 20 H 0.09 4.21 7.85 -2.91 -0.02 4.18 16 21 C -0.07 -3.57 5.47 84.86 0.46 -3.11 16 22 N -0.95 -55.03 10.64 21.65 0.23 -54.80 16 23 Si 0.97 44.44 29.56 68.60 2.03 46.47 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 C -0.05 -1.51 6.03 -19.35 -0.12 -1.63 16 28 C -0.12 -2.57 6.00 -19.62 -0.12 -2.69 16 29 C -0.07 -1.08 6.09 30.53 0.19 -0.89 16 30 C -0.12 -1.96 7.08 31.51 0.22 -1.73 16 31 C -0.08 -2.05 5.58 30.51 0.17 -1.88 16 32 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.08 0.76 7.66 -2.39 -0.02 0.74 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.13 3.39 6.40 -2.91 -0.02 3.37 16 37 H 0.40 14.00 6.68 -92.71 -0.62 13.38 16 38 H 0.07 2.61 7.82 -2.39 -0.02 2.60 16 39 H 0.03 1.55 7.98 -2.38 -0.02 1.53 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 2.48 7.82 -2.39 -0.02 2.47 16 42 H 0.08 2.38 7.85 -2.39 -0.02 2.36 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 50 H 0.06 1.90 7.19 -2.39 -0.02 1.88 16 Total: -1.00 -67.31 388.98 2.97 -64.33 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.33 Total: 35.72 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.47 Total: -9.95 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.80 Total: -112.98 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -67.31 2.97 -64.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098475382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.857 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds