Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 110.34496 * 2 1 4 4 O 1.21278 * 120.00080 * 119.32963 * 3 2 1 5 5 N 1.34776 * 119.99497 * 299.32537 * 3 2 1 6 6 C 1.46508 * 119.99596 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.56083 * 32.09450 * 6 5 3 8 8 C 1.54856 * 110.62242 * 269.02607 * 6 5 3 9 9 C 1.55843 * 103.44505 * 241.50778 * 8 6 5 10 10 H 1.09003 * 116.13069 * 159.15074 * 9 8 6 11 11 C 1.55839 * 105.06748 * 288.17835 * 9 8 6 12 12 C 1.54856 * 103.44730 * 71.82329 * 11 9 8 13 13 C 1.55839 * 110.62787 * 155.00225 * 6 5 3 14 14 H 1.09004 * 115.55894 * 318.92041 * 13 6 5 15 15 N 1.50239 * 101.05327 * 85.55039 * 13 6 5 16 16 C 1.36938 * 130.83599 * 233.94913 * 15 13 6 17 17 H 1.08005 * 119.99804 * 171.56665 * 16 15 13 18 18 C 1.38812 * 120.00156 * 351.57076 * 16 15 13 19 19 N 1.31616 * 119.99729 * 158.03601 * 18 16 15 20 20 Si 1.86796 * 119.99882 * 338.03020 * 18 16 15 21 21 H 1.48496 * 109.47003 * 92.97169 * 20 18 16 22 22 H 1.48501 * 109.46989 * 212.97284 * 20 18 16 23 23 H 1.48503 * 109.47259 * 332.96855 * 20 18 16 24 24 C 1.54339 * 110.30316 * 122.12584 * 2 1 3 25 25 C 1.54350 * 102.39279 * 92.57684 * 24 2 1 26 26 C 1.51370 * 105.16776 * 26.34499 * 25 24 2 27 27 C 1.38494 * 130.39084 * 162.78156 * 26 25 24 28 28 C 1.38110 * 120.21470 * 180.29771 * 27 26 25 29 29 C 1.38250 * 119.93498 * 359.46008 * 28 27 26 30 30 C 1.38108 * 119.93243 * 0.55311 * 29 28 27 31 31 C 1.38214 * 109.76091 * 342.81452 * 26 25 24 32 32 H 1.08999 * 109.47283 * 180.67199 * 1 2 3 33 33 H 1.08996 * 109.47243 * 300.67513 * 1 2 3 34 34 H 1.09001 * 109.47647 * 60.67439 * 1 2 3 35 35 H 0.96996 * 120.00959 * 0.02562 * 5 3 2 36 36 H 1.08994 * 110.62995 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.62711 * 123.02079 * 8 6 5 38 38 H 1.09005 * 110.62420 * 313.33611 * 11 9 8 39 39 H 1.09001 * 110.76862 * 190.37549 * 11 9 8 40 40 H 1.09007 * 110.62284 * 241.51476 * 12 11 9 41 41 H 1.08995 * 110.76177 * 118.55836 * 12 11 9 42 42 H 0.97006 * 119.99574 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.82300 * 210.79738 * 24 2 1 44 44 H 1.09002 * 110.82703 * 334.35249 * 24 2 1 45 45 H 1.08998 * 110.30176 * 267.42528 * 25 24 2 46 46 H 1.08991 * 110.30294 * 145.26918 * 25 24 2 47 47 H 1.07996 * 119.89412 * 0.02562 * 27 26 25 48 48 H 1.08003 * 120.03422 * 179.72573 * 28 27 26 49 49 H 1.08006 * 120.03557 * 180.28313 * 29 28 27 50 50 H 1.07997 * 119.89137 * 179.74042 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7471 1.8027 0.9157 5 7 1.7522 2.2435 -1.0177 6 6 2.2620 3.6171 -1.0180 7 1 3.2355 3.6641 -0.5300 8 6 1.2562 4.5723 -0.3295 9 6 0.8730 5.5723 -1.4618 10 1 -0.0646 6.1119 -1.3286 11 6 2.1374 6.4608 -1.6626 12 6 3.1432 5.5055 -2.3510 13 6 2.3494 4.1699 -2.4724 14 1 2.7199 3.4689 -3.2205 15 7 0.9513 4.6829 -2.6701 16 6 0.0315 4.4207 -3.6502 17 1 -0.9811 4.7833 -3.5514 18 6 0.4006 3.6890 -4.7706 19 7 -0.5163 3.0697 -5.4834 20 14 2.1983 3.5836 -5.2667 21 1 2.8091 2.3737 -4.6599 22 1 2.2996 3.5004 -6.7459 23 1 2.9155 4.7929 -4.7888 24 6 2.0655 -0.7697 1.2259 25 6 2.2440 -2.1979 0.6682 26 6 2.4654 -2.0178 -0.8184 27 6 2.9853 -2.8897 -1.7604 28 6 3.0999 -2.4994 -3.0802 29 6 2.6843 -1.2383 -3.4653 30 6 2.1658 -0.3673 -2.5273 31 6 2.0552 -0.7550 -1.2023 32 1 -0.3634 -1.0276 0.0121 33 1 -0.3633 0.5243 0.8838 34 1 -0.3634 0.5033 -0.8959 35 1 1.1975 1.9320 -1.7499 36 1 0.3780 4.0243 0.0117 37 1 1.7304 5.0957 0.5007 38 1 2.5254 6.7993 -0.7018 39 1 1.9138 7.3115 -2.3063 40 1 4.0299 5.3703 -1.7316 41 1 3.4185 5.8796 -3.3370 42 1 -0.2583 2.5580 -6.2661 43 1 3.0207 -0.3597 1.5539 44 1 1.3386 -0.7591 2.0381 45 1 1.3461 -2.7890 0.8479 46 1 3.1105 -2.6764 1.1244 47 1 3.3062 -3.8765 -1.4612 48 1 3.5099 -3.1801 -3.8116 49 1 2.7689 -0.9330 -4.4978 50 1 1.8452 0.6192 -2.8280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098482354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 40.198949 kcal Electronic energy + Delta-G solvation = -31570.551886 eV Core-core repulsion = 27756.641704 eV Total energy + Delta-G solvation = -3813.910182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97652 -39.71645 -38.32959 -35.80123 -33.97899 -32.67413 -31.93036 -29.77976 -29.71898 -29.28700 -28.79886 -27.99079 -25.34193 -24.06664 -22.70716 -22.52173 -21.06625 -20.76624 -20.22677 -19.25796 -18.92731 -17.13384 -17.11209 -16.29869 -16.00283 -15.53019 -15.07459 -14.96569 -14.64641 -14.20406 -14.01670 -13.71052 -13.60436 -13.38779 -13.12164 -12.99084 -12.76388 -12.51529 -12.39196 -12.30859 -12.17668 -11.63568 -11.54496 -11.47315 -11.35168 -11.16170 -11.08867 -11.04395 -10.90926 -10.78148 -10.64653 -10.41044 -10.26629 -9.91458 -9.70674 -9.36074 -9.33019 -8.95750 -8.74297 -8.53649 -8.47677 -7.31912 -6.00086 -3.25261 1.36948 1.45256 2.94192 3.20269 3.39666 3.41605 3.53869 3.84039 4.32291 4.44188 4.46128 4.59354 4.85408 4.93038 5.04136 5.07723 5.13241 5.20875 5.24806 5.31045 5.37559 5.46335 5.56351 5.57987 5.59678 5.66118 5.67446 5.79256 5.81110 5.82355 5.90827 5.92701 5.97405 6.01949 6.02976 6.09299 6.17747 6.20267 6.23807 6.27899 6.41132 6.47565 6.49451 6.62110 6.65173 6.67476 6.73538 6.84381 7.02730 7.05507 7.30106 7.96491 8.23253 8.57948 8.64432 9.56750 10.17369 11.15937 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.005126 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.639473 B = 5461.524956 C = 6806.870522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 C 0.526 3.474 4 O -0.550 6.550 5 N -0.705 5.705 6 C 0.130 3.870 7 H 0.085 0.915 8 C -0.135 4.135 9 C 0.141 3.859 10 H 0.096 0.904 11 C -0.133 4.133 12 C -0.135 4.135 13 C 0.115 3.885 14 H 0.094 0.906 15 N -0.605 5.605 16 C -0.224 4.224 17 H 0.099 0.901 18 C 0.017 3.983 19 N -0.909 5.909 20 Si 0.863 3.137 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.261 1.261 24 C -0.099 4.099 25 C -0.080 4.080 26 C -0.091 4.091 27 C -0.112 4.112 28 C -0.117 4.117 29 C -0.116 4.116 30 C -0.095 4.095 31 C -0.087 4.087 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.406 0.594 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.262 0.738 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 -8.251 10.320 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C 0.312 3.688 4 O -0.429 6.429 5 N -0.355 5.355 6 C 0.024 3.976 7 H 0.103 0.897 8 C -0.176 4.176 9 C 0.034 3.966 10 H 0.114 0.886 11 C -0.172 4.172 12 C -0.175 4.175 13 C 0.008 3.992 14 H 0.111 0.889 15 N -0.327 5.327 16 C -0.350 4.350 17 H 0.116 0.884 18 C -0.181 4.181 19 N -0.554 5.554 20 Si 0.695 3.305 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.186 1.186 24 C -0.137 4.137 25 C -0.117 4.117 26 C -0.091 4.091 27 C -0.130 4.130 28 C -0.135 4.135 29 C -0.134 4.134 30 C -0.113 4.113 31 C -0.087 4.087 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.798 -8.072 10.646 14.564 hybrid contribution 0.767 -0.198 -1.140 1.388 sum 6.565 -8.270 9.506 14.208 Atomic orbital electron populations 1.21792 0.91119 1.02964 1.03240 1.20363 0.97407 0.92229 0.94352 1.20274 0.79962 0.86618 0.81985 1.90622 1.39021 1.77268 1.35972 1.46161 1.52573 1.12606 1.24173 1.22520 0.96819 0.80299 0.98009 0.89680 1.23336 0.98841 0.97903 0.97499 1.22964 0.96015 0.90616 0.87039 0.88569 1.22991 0.97065 0.97996 0.99135 1.23064 0.97214 0.96609 1.00596 1.23352 0.87724 0.94810 0.93347 0.88892 1.46901 1.11150 1.48960 1.25738 1.18670 0.90474 1.29751 0.96134 0.88379 1.24691 0.96638 0.99105 0.97635 1.69824 1.32384 1.33381 1.19814 0.87249 0.87777 0.78497 0.76978 1.21724 1.23253 1.18635 1.22301 1.02923 0.93091 0.95388 1.21069 1.02097 0.97734 0.90825 1.20518 0.98590 0.94219 0.95772 1.20552 1.00738 0.99118 0.92622 1.21043 1.00252 0.96433 0.95762 1.21086 0.98844 0.93855 0.99588 1.20853 0.98586 1.00181 0.91715 1.20187 0.99924 0.95290 0.93327 0.91359 0.91562 0.91250 0.75667 0.91615 0.91794 0.92364 0.92154 0.92314 0.91365 0.92796 0.89240 0.90096 0.90141 0.90572 0.86343 0.85942 0.85729 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.38 37.16 0.31 -1.44 16 2 C -0.04 -0.58 0.72 -155.78 -0.11 -0.70 16 3 C 0.53 9.15 6.49 -10.98 -0.07 9.08 16 4 O -0.55 -10.78 15.16 5.56 0.08 -10.70 16 5 N -0.70 -12.75 4.47 -51.39 -0.23 -12.98 16 6 C 0.13 2.39 2.80 -65.43 -0.18 2.20 16 7 H 0.09 1.57 7.23 -51.93 -0.38 1.19 16 8 C -0.14 -2.32 6.23 -24.23 -0.15 -2.47 16 9 C 0.14 2.56 5.48 -62.80 -0.34 2.22 16 10 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 11 C -0.13 -2.18 6.44 -24.24 -0.16 -2.33 16 12 C -0.14 -2.42 6.21 -24.23 -0.15 -2.57 16 13 C 0.12 2.33 3.14 -62.80 -0.20 2.13 16 14 H 0.09 2.05 3.50 -51.93 -0.18 1.87 16 15 N -0.60 -13.33 2.85 -145.82 -0.42 -13.74 16 16 C -0.22 -5.86 10.94 -15.06 -0.16 -6.03 16 17 H 0.10 2.75 8.06 -52.48 -0.42 2.33 16 18 C 0.02 0.46 5.49 -17.43 -0.10 0.37 16 19 N -0.91 -26.51 13.97 55.49 0.78 -25.73 16 20 Si 0.86 20.97 24.62 -169.99 -4.18 16.79 16 21 H -0.29 -6.78 6.75 56.52 0.38 -6.40 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 23 H -0.26 -6.10 4.83 56.52 0.27 -5.83 16 24 C -0.10 -1.23 5.84 -25.32 -0.15 -1.38 16 25 C -0.08 -0.86 6.76 -26.85 -0.18 -1.04 16 26 C -0.09 -1.20 6.14 -104.21 -0.64 -1.84 16 27 C -0.11 -1.36 10.04 -39.53 -0.40 -1.76 16 28 C -0.12 -1.47 10.05 -39.62 -0.40 -1.87 16 29 C -0.12 -1.72 10.05 -39.62 -0.40 -2.12 16 30 C -0.10 -1.57 9.46 -39.53 -0.37 -1.94 16 31 C -0.09 -1.31 4.90 -104.21 -0.51 -1.82 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 35 H 0.41 7.73 6.15 -40.82 -0.25 7.48 16 36 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 37 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 38 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.92 7.82 -51.92 -0.41 0.52 16 41 H 0.07 1.30 6.58 -51.93 -0.34 0.96 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 1.25 7.06 -51.93 -0.37 0.89 16 44 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 49 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 50 H 0.12 2.25 5.92 -52.49 -0.31 1.94 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -30.13 378.18 -10.41 -40.54 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.78 Total: 13.44 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -4.36 Total: -13.32 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.13 Total: -52.45 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.18 Total: 16.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.13 -10.41 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098482354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.740 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds