Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 110.34496 * 2 1 4 4 O 1.21278 * 120.00080 * 119.32963 * 3 2 1 5 5 N 1.34776 * 119.99497 * 299.32537 * 3 2 1 6 6 C 1.46508 * 119.99596 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.56083 * 32.09450 * 6 5 3 8 8 C 1.54856 * 110.62242 * 269.02607 * 6 5 3 9 9 C 1.55843 * 103.44505 * 241.50778 * 8 6 5 10 10 H 1.09003 * 116.13069 * 159.15074 * 9 8 6 11 11 C 1.55839 * 105.06748 * 288.17835 * 9 8 6 12 12 C 1.54856 * 103.44730 * 71.82329 * 11 9 8 13 13 C 1.55839 * 110.62787 * 155.00225 * 6 5 3 14 14 H 1.09004 * 115.55894 * 318.92041 * 13 6 5 15 15 N 1.50239 * 101.05327 * 85.55039 * 13 6 5 16 16 C 1.36938 * 130.83599 * 233.94913 * 15 13 6 17 17 H 1.08005 * 119.99804 * 171.56665 * 16 15 13 18 18 C 1.38812 * 120.00156 * 351.57076 * 16 15 13 19 19 N 1.31616 * 119.99729 * 158.03601 * 18 16 15 20 20 Si 1.86796 * 119.99882 * 338.03020 * 18 16 15 21 21 H 1.48496 * 109.47003 * 92.97169 * 20 18 16 22 22 H 1.48501 * 109.46989 * 212.97284 * 20 18 16 23 23 H 1.48503 * 109.47259 * 332.96855 * 20 18 16 24 24 C 1.54339 * 110.30316 * 122.12584 * 2 1 3 25 25 C 1.54350 * 102.39279 * 92.57684 * 24 2 1 26 26 C 1.51370 * 105.16776 * 26.34499 * 25 24 2 27 27 C 1.38494 * 130.39084 * 162.78156 * 26 25 24 28 28 C 1.38110 * 120.21470 * 180.29771 * 27 26 25 29 29 C 1.38250 * 119.93498 * 359.46008 * 28 27 26 30 30 C 1.38108 * 119.93243 * 0.55311 * 29 28 27 31 31 C 1.38214 * 109.76091 * 342.81452 * 26 25 24 32 32 H 1.08999 * 109.47283 * 180.67199 * 1 2 3 33 33 H 1.08996 * 109.47243 * 300.67513 * 1 2 3 34 34 H 1.09001 * 109.47647 * 60.67439 * 1 2 3 35 35 H 0.96996 * 120.00959 * 0.02562 * 5 3 2 36 36 H 1.08994 * 110.62995 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.62711 * 123.02079 * 8 6 5 38 38 H 1.09005 * 110.62420 * 313.33611 * 11 9 8 39 39 H 1.09001 * 110.76862 * 190.37549 * 11 9 8 40 40 H 1.09007 * 110.62284 * 241.51476 * 12 11 9 41 41 H 1.08995 * 110.76177 * 118.55836 * 12 11 9 42 42 H 0.97006 * 119.99574 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.82300 * 210.79738 * 24 2 1 44 44 H 1.09002 * 110.82703 * 334.35249 * 24 2 1 45 45 H 1.08998 * 110.30176 * 267.42528 * 25 24 2 46 46 H 1.08991 * 110.30294 * 145.26918 * 25 24 2 47 47 H 1.07996 * 119.89412 * 0.02562 * 27 26 25 48 48 H 1.08003 * 120.03422 * 179.72573 * 28 27 26 49 49 H 1.08006 * 120.03557 * 180.28313 * 29 28 27 50 50 H 1.07997 * 119.89137 * 179.74042 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7471 1.8027 0.9157 5 7 1.7522 2.2435 -1.0177 6 6 2.2620 3.6171 -1.0180 7 1 3.2355 3.6641 -0.5300 8 6 1.2562 4.5723 -0.3295 9 6 0.8730 5.5723 -1.4618 10 1 -0.0646 6.1119 -1.3286 11 6 2.1374 6.4608 -1.6626 12 6 3.1432 5.5055 -2.3510 13 6 2.3494 4.1699 -2.4724 14 1 2.7199 3.4689 -3.2205 15 7 0.9513 4.6829 -2.6701 16 6 0.0315 4.4207 -3.6502 17 1 -0.9811 4.7833 -3.5514 18 6 0.4006 3.6890 -4.7706 19 7 -0.5163 3.0697 -5.4834 20 14 2.1983 3.5836 -5.2667 21 1 2.8091 2.3737 -4.6599 22 1 2.2996 3.5004 -6.7459 23 1 2.9155 4.7929 -4.7888 24 6 2.0655 -0.7697 1.2259 25 6 2.2440 -2.1979 0.6682 26 6 2.4654 -2.0178 -0.8184 27 6 2.9853 -2.8897 -1.7604 28 6 3.0999 -2.4994 -3.0802 29 6 2.6843 -1.2383 -3.4653 30 6 2.1658 -0.3673 -2.5273 31 6 2.0552 -0.7550 -1.2023 32 1 -0.3634 -1.0276 0.0121 33 1 -0.3633 0.5243 0.8838 34 1 -0.3634 0.5033 -0.8959 35 1 1.1975 1.9320 -1.7499 36 1 0.3780 4.0243 0.0117 37 1 1.7304 5.0957 0.5007 38 1 2.5254 6.7993 -0.7018 39 1 1.9138 7.3115 -2.3063 40 1 4.0299 5.3703 -1.7316 41 1 3.4185 5.8796 -3.3370 42 1 -0.2583 2.5580 -6.2661 43 1 3.0207 -0.3597 1.5539 44 1 1.3386 -0.7591 2.0381 45 1 1.3461 -2.7890 0.8479 46 1 3.1105 -2.6764 1.1244 47 1 3.3062 -3.8765 -1.4612 48 1 3.5099 -3.1801 -3.8116 49 1 2.7689 -0.9330 -4.4978 50 1 1.8452 0.6192 -2.8280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098482354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 23.729116 kcal Electronic energy + Delta-G solvation = -31571.266071 eV Core-core repulsion = 27756.641704 eV Total energy + Delta-G solvation = -3814.624367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17737 -41.13359 -39.65636 -36.88859 -35.43142 -34.64754 -33.03319 -31.54518 -30.85382 -30.75394 -29.94446 -29.29282 -26.43896 -25.92561 -23.87363 -23.68496 -22.30174 -22.10391 -21.67728 -20.60819 -20.38763 -18.95722 -18.43512 -17.81915 -17.10174 -16.99382 -16.36303 -16.14073 -15.88909 -15.57953 -15.44805 -15.29298 -15.08537 -14.66525 -14.58158 -14.23056 -14.02542 -13.93781 -13.64195 -13.41509 -13.28237 -13.22057 -12.96053 -12.89577 -12.84968 -12.58232 -12.44208 -12.39863 -12.11055 -12.00711 -11.89518 -11.76886 -11.67368 -11.53536 -11.30837 -11.14409 -10.93345 -10.70790 -10.03926 -9.81116 -9.53270 -9.22848 -8.13612 -5.32805 0.30952 0.37684 1.22067 1.35978 1.41967 1.58068 2.20760 2.39638 2.75967 2.90801 3.15774 3.29598 3.40464 3.66933 3.77085 3.81877 3.90517 4.00445 4.05799 4.08102 4.13147 4.23994 4.27622 4.28869 4.45264 4.48948 4.52902 4.58708 4.59006 4.60357 4.65410 4.67080 4.76313 4.82025 4.87760 5.00591 5.03372 5.03468 5.09839 5.13038 5.19090 5.21824 5.28568 5.32915 5.38986 5.45668 5.54588 5.54738 5.60988 5.62681 6.01572 6.11832 6.50648 6.61564 7.16129 7.48967 8.22341 9.06075 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.005126 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.639473 B = 5461.524956 C = 6806.870522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 C 0.524 3.476 4 O -0.573 6.573 5 N -0.710 5.710 6 C 0.133 3.867 7 H 0.090 0.910 8 C -0.124 4.124 9 C 0.135 3.865 10 H 0.102 0.898 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.105 3.895 14 H 0.071 0.929 15 N -0.623 5.623 16 C -0.201 4.201 17 H 0.070 0.930 18 C -0.036 4.036 19 N -0.956 5.956 20 Si 0.918 3.082 21 H -0.287 1.287 22 H -0.321 1.321 23 H -0.244 1.244 24 C -0.096 4.096 25 C -0.072 4.072 26 C -0.092 4.092 27 C -0.107 4.107 28 C -0.112 4.112 29 C -0.138 4.138 30 C -0.123 4.123 31 C -0.105 4.105 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.399 0.601 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.257 0.743 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.156 0.844 48 H 0.152 0.848 49 H 0.118 0.882 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -9.473 13.137 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.043 4.043 3 C 0.311 3.689 4 O -0.453 6.453 5 N -0.359 5.359 6 C 0.026 3.974 7 H 0.108 0.892 8 C -0.164 4.164 9 C 0.030 3.970 10 H 0.120 0.880 11 C -0.160 4.160 12 C -0.173 4.173 13 C -0.002 4.002 14 H 0.089 0.911 15 N -0.347 5.347 16 C -0.329 4.329 17 H 0.088 0.912 18 C -0.229 4.229 19 N -0.604 5.604 20 Si 0.751 3.249 21 H -0.215 1.215 22 H -0.251 1.251 23 H -0.169 1.169 24 C -0.134 4.134 25 C -0.109 4.109 26 C -0.092 4.092 27 C -0.125 4.125 28 C -0.130 4.130 29 C -0.156 4.156 30 C -0.141 4.141 31 C -0.106 4.106 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.235 0.765 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.173 0.827 48 H 0.170 0.830 49 H 0.136 0.864 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.608 -9.257 13.518 18.064 hybrid contribution 0.177 0.190 -1.946 1.964 sum 7.785 -9.067 11.571 16.635 Atomic orbital electron populations 1.21768 0.90349 1.04099 1.02397 1.20472 0.98000 0.90377 0.95470 1.20827 0.79313 0.87632 0.81130 1.90595 1.40073 1.78004 1.36652 1.46269 1.52491 1.12846 1.24270 1.22491 0.97479 0.80776 0.96639 0.89184 1.23260 0.98229 0.97247 0.97634 1.23238 0.97547 0.90836 0.85409 0.87985 1.22933 0.95231 0.97018 1.00798 1.23068 0.98296 0.95085 1.00816 1.23462 0.86970 0.95859 0.93889 0.91149 1.46947 1.11522 1.50417 1.25818 1.18551 0.90282 1.27581 0.96511 0.91242 1.25152 0.99561 0.99925 0.98309 1.69943 1.34145 1.35583 1.20750 0.86350 0.84220 0.79153 0.75218 1.21539 1.25130 1.16850 1.22323 1.02420 0.93759 0.94894 1.21123 1.04198 0.96826 0.88708 1.20932 0.97530 0.93288 0.97474 1.20980 0.99229 1.00359 0.91938 1.21378 0.99063 0.95511 0.97004 1.21201 1.00005 0.95185 0.99208 1.20767 1.00708 0.99422 0.93250 1.20286 1.00901 0.96665 0.92710 0.89256 0.90693 0.93699 0.76492 0.92673 0.89005 0.88750 0.92127 0.89493 0.92619 0.93379 0.90948 0.88104 0.87704 0.88357 0.82684 0.83015 0.86360 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.38 71.98 0.60 -2.70 16 2 C -0.04 -1.14 0.72 -53.01 -0.04 -1.17 16 3 C 0.52 18.23 6.49 87.66 0.57 18.80 16 4 O -0.57 -22.05 15.16 -3.02 -0.05 -22.09 16 5 N -0.71 -26.24 4.47 -434.90 -1.94 -28.18 16 6 C 0.13 4.77 2.80 46.61 0.13 4.90 16 7 H 0.09 3.17 7.23 -2.39 -0.02 3.15 16 8 C -0.12 -4.02 6.23 32.21 0.20 -3.82 16 9 C 0.14 4.72 5.48 46.23 0.25 4.97 16 10 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 11 C -0.12 -3.60 6.44 32.21 0.21 -3.39 16 12 C -0.13 -4.47 6.21 32.21 0.20 -4.27 16 13 C 0.10 4.20 3.14 46.23 0.15 4.35 16 14 H 0.07 3.16 3.50 -2.38 -0.01 3.16 16 15 N -0.62 -27.70 2.85 -615.25 -1.75 -29.45 16 16 C -0.20 -10.94 10.94 84.03 0.92 -10.02 16 17 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 18 C -0.04 -2.04 5.49 84.86 0.47 -1.57 16 19 N -0.96 -58.88 13.97 21.65 0.30 -58.58 16 20 Si 0.92 45.62 24.62 68.60 1.69 47.30 16 21 H -0.29 -13.94 6.75 99.48 0.67 -13.27 16 22 H -0.32 -16.70 7.11 99.48 0.71 -16.00 16 23 H -0.24 -11.27 4.83 99.48 0.48 -10.79 16 24 C -0.10 -2.16 5.84 31.51 0.18 -1.98 16 25 C -0.07 -1.27 6.76 30.52 0.21 -1.06 16 26 C -0.09 -2.20 6.14 -19.60 -0.12 -2.32 16 27 C -0.11 -2.26 10.04 22.30 0.22 -2.03 16 28 C -0.11 -2.62 10.05 22.24 0.22 -2.39 16 29 C -0.14 -4.22 10.05 22.24 0.22 -4.00 16 30 C -0.12 -4.26 9.46 22.30 0.21 -4.05 16 31 C -0.11 -3.15 4.90 -19.60 -0.10 -3.25 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.35 7.71 -2.39 -0.02 1.34 16 35 H 0.40 16.15 6.15 -92.71 -0.57 15.58 16 36 H 0.05 1.91 7.98 -2.39 -0.02 1.89 16 37 H 0.09 2.50 7.82 -2.39 -0.02 2.49 16 38 H 0.09 2.19 7.82 -2.38 -0.02 2.17 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 2.43 7.82 -2.38 -0.02 2.42 16 41 H 0.06 2.01 6.58 -2.39 -0.02 1.99 16 42 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 43 H 0.07 1.90 7.06 -2.39 -0.02 1.88 16 44 H 0.10 1.84 7.90 -2.39 -0.02 1.82 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 47 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 48 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 49 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 50 H 0.09 3.64 5.92 -2.91 -0.02 3.63 16 Total: -1.00 -69.22 378.18 3.08 -66.14 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: 0.12 Total: 39.87 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.71 Total: -15.01 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -3.39 Total: -116.21 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.69 Total: 47.30 kcal Total: -69.22 3.08 -66.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098482354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.865 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds