Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99826 * 2 1 4 4 C 1.52998 * 109.47474 * 293.95742 * 3 2 1 5 5 N 1.46494 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00396 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99683 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.60443 * 294.43512 * 8 6 5 10 10 C 1.53344 * 109.60056 * 54.76063 * 8 6 5 11 11 C 1.53078 * 108.42608 * 52.39115 * 10 8 6 12 12 C 1.50168 * 109.82252 * 48.94058 * 11 10 8 13 13 O 1.21279 * 118.24635 * 162.38050 * 12 11 10 14 14 N 1.33238 * 123.59540 * 342.28431 * 12 11 10 15 15 C 1.45749 * 124.07362 * 2.38590 * 14 12 11 16 16 C 1.46899 * 110.99762 * 123.95505 * 2 1 3 17 17 C 1.50696 * 109.47176 * 66.04764 * 16 2 1 18 18 O 1.21293 * 119.99942 * 359.97438 * 17 16 2 19 19 N 1.34775 * 119.99918 * 179.97438 * 17 16 2 20 20 C 1.37102 * 119.99636 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00288 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99675 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99931 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99767 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47496 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47146 * 120.00467 * 24 22 20 27 27 H 1.48505 * 109.47125 * 240.00157 * 24 22 20 28 28 H 1.09002 * 109.46891 * 59.99630 * 1 2 3 29 29 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46709 * 300.00194 * 1 2 3 31 31 H 1.09000 * 109.46893 * 173.95255 * 3 2 1 32 32 H 1.09000 * 109.46937 * 53.95556 * 3 2 1 33 33 H 1.08997 * 109.46964 * 59.99775 * 4 3 2 34 34 H 1.09007 * 109.46844 * 300.00250 * 4 3 2 35 35 H 0.96999 * 119.99834 * 359.97438 * 5 4 3 36 36 H 1.08998 * 109.47259 * 180.32165 * 9 8 6 37 37 H 1.08996 * 109.47275 * 300.32407 * 9 8 6 38 38 H 1.08999 * 109.46766 * 60.32449 * 9 8 6 39 39 H 1.08998 * 109.67508 * 292.65426 * 10 8 6 40 40 H 1.09002 * 109.67199 * 172.11829 * 10 8 6 41 41 H 1.08992 * 109.40147 * 169.02796 * 11 10 8 42 42 H 1.09002 * 109.39828 * 288.85618 * 11 10 8 43 43 H 0.97004 * 117.97746 * 182.30729 * 14 12 11 44 44 H 1.09007 * 109.30179 * 220.53699 * 15 14 12 45 45 H 1.08994 * 109.13444 * 101.04707 * 15 14 12 46 46 H 1.09001 * 109.46905 * 186.04563 * 16 2 1 47 47 H 1.08991 * 109.47159 * 306.04316 * 16 2 1 48 48 H 0.96993 * 120.00402 * 0.02562 * 19 17 16 49 49 H 0.96994 * 119.99653 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4250 -1.3184 6 6 1.9565 4.2238 -2.3852 7 8 1.3415 3.8104 -3.3453 8 6 2.4966 5.6307 -2.3852 9 6 1.7866 6.4531 -1.3080 10 6 4.0034 5.6033 -2.1018 11 6 4.6625 4.6298 -3.0823 12 6 4.1985 4.9228 -4.4801 13 8 4.8471 4.4807 -5.4047 14 7 3.1118 5.6408 -4.7610 15 6 2.2675 6.2719 -3.7545 16 6 1.9954 -0.7660 1.1376 17 6 1.6370 -2.2204 0.9728 18 8 1.0047 -2.5831 0.0033 19 7 2.0189 -3.1181 1.9027 20 6 1.6922 -4.4412 1.7530 21 1 1.1293 -4.7642 0.8898 22 6 2.0865 -5.3669 2.7115 23 7 2.7719 -4.9740 3.7616 24 14 1.6408 -7.1694 2.5079 25 1 0.8718 -7.3503 1.2505 26 1 2.8820 -7.9827 2.4498 27 1 0.8149 -7.6085 3.6613 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5611 1.9273 0.8309 33 1 0.5472 2.0845 -1.4264 34 1 2.0658 1.5016 -2.1492 35 1 2.6491 3.7555 -0.5507 36 1 2.1747 7.4716 -1.3137 37 1 0.7159 6.4712 -1.5115 38 1 1.9633 6.0024 -0.3315 39 1 4.1785 5.2690 -1.0793 40 1 4.4207 6.6009 -2.2389 41 1 5.7454 4.7406 -3.0295 42 1 4.3896 3.6085 -2.8169 43 1 2.8679 5.7514 -5.6933 44 1 1.2212 6.1543 -4.0368 45 1 2.5089 7.3334 -3.7002 46 1 3.0797 -0.6611 1.1756 47 1 1.5612 -0.3873 2.0627 48 1 2.5242 -2.8281 2.6781 49 1 3.0468 -5.6200 4.4308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -105.450700 kcal Electronic energy + Delta-G solvation = -29876.341413 eV Core-core repulsion = 25645.266125 eV Total energy + Delta-G solvation = -4231.075288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52162 -39.47136 -38.68980 -37.12433 -36.57628 -34.95845 -33.93361 -33.63703 -31.85780 -31.26878 -29.55580 -27.73856 -26.78887 -25.55870 -24.79859 -24.28163 -23.09752 -21.31785 -21.12826 -19.23526 -19.19313 -17.87193 -17.55206 -16.91103 -16.58864 -16.32057 -16.21946 -15.98620 -15.63784 -15.09464 -14.94051 -14.63229 -14.53989 -14.20907 -14.07308 -13.87273 -13.57742 -13.47337 -13.36354 -13.19254 -13.00967 -12.85722 -12.71488 -12.16436 -11.95636 -11.88259 -11.74933 -11.54831 -11.44485 -11.35223 -11.30764 -11.09880 -10.97326 -10.34812 -10.23869 -10.07950 -10.03844 -9.50324 -9.39177 -9.29639 -8.50959 -8.01153 -7.91861 -6.43376 -3.83967 2.28944 2.40635 2.70712 2.98536 3.15567 3.26493 3.33875 3.80484 3.87080 3.89217 4.03954 4.09019 4.22128 4.28136 4.43764 4.72092 4.77342 4.80415 4.92662 4.97523 5.02365 5.05924 5.08483 5.15458 5.22670 5.29066 5.32671 5.33425 5.46513 5.49450 5.59133 5.64373 5.77870 5.84063 5.88753 5.95963 6.13249 6.25058 6.46456 6.52094 7.02400 7.11336 7.19007 7.28385 7.54399 7.89038 7.94603 8.05104 8.60051 9.16938 9.52590 10.04322 10.74447 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.001852 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.971155 B =15112.681606 C =15422.649185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.726 5.726 6 C 0.520 3.480 7 O -0.526 6.526 8 C -0.099 4.099 9 C -0.138 4.138 10 C -0.112 4.112 11 C -0.143 4.143 12 C 0.521 3.479 13 O -0.558 6.558 14 N -0.711 5.711 15 C 0.133 3.867 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.015 0.985 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.402 0.598 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 28.709 -4.519 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.378 5.378 6 C 0.305 3.695 7 O -0.401 6.401 8 C -0.103 4.103 9 C -0.196 4.196 10 C -0.150 4.150 11 C -0.183 4.183 12 C 0.308 3.692 13 O -0.437 6.437 14 N -0.362 5.362 15 C 0.008 3.992 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.238 0.762 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.941 27.519 -6.387 28.266 hybrid contribution -0.051 -0.167 1.446 1.457 sum 0.891 27.352 -4.941 27.809 Atomic orbital electron populations 1.22626 0.86454 1.04796 0.99048 1.61437 1.08957 1.10365 1.43144 1.22246 1.00755 0.89857 0.95543 1.21369 0.99666 0.80480 0.98761 1.45921 1.57941 1.14423 1.19510 1.20239 0.79887 0.86767 0.82579 1.90762 1.40341 1.75223 1.33806 1.21224 0.97453 0.93824 0.97798 1.21779 1.00937 0.99948 0.96899 1.21801 0.91904 1.01103 1.00189 1.21736 1.03174 1.01892 0.91498 1.20022 0.80071 0.77317 0.91822 1.90773 1.54765 1.51468 1.46670 1.45246 1.26943 1.53209 1.10786 1.21240 0.96153 0.95738 0.86025 1.21865 1.00672 0.94268 0.91585 1.19700 0.85561 0.86594 0.85293 1.90499 1.43823 1.80087 1.31574 1.41867 1.49414 1.07389 1.21436 1.19754 1.32775 0.82232 1.07937 0.87830 1.25267 0.96820 1.00601 0.95323 1.69619 1.38111 1.35674 1.10963 0.85800 0.78229 0.81896 0.78429 1.19197 1.20739 1.20791 0.91904 0.88348 0.96627 0.90279 0.94568 0.91065 0.90219 0.76739 0.90698 0.91326 0.91198 0.89686 0.89568 0.87437 0.87989 0.76247 0.89392 0.90677 0.89312 0.93349 0.77515 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.07 0.54 0.83 16 2 N -0.51 -8.12 4.50 -244.37 -1.10 -9.22 16 3 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 4 C 0.12 1.32 5.60 -4.05 -0.02 1.30 16 5 N -0.73 -5.70 5.31 -60.30 -0.32 -6.02 16 6 C 0.52 4.77 4.74 -10.99 -0.05 4.72 16 7 O -0.53 -7.23 15.60 5.56 0.09 -7.14 16 8 C -0.10 -0.53 0.65 -155.52 -0.10 -0.63 16 9 C -0.14 -0.39 8.44 37.16 0.31 -0.08 16 10 C -0.11 -0.46 4.73 -26.51 -0.13 -0.59 16 11 C -0.14 -1.10 5.51 -28.10 -0.15 -1.25 16 12 C 0.52 5.80 7.44 -11.93 -0.09 5.71 16 13 O -0.56 -8.79 17.78 5.56 0.10 -8.69 16 14 N -0.71 -6.09 5.11 -61.42 -0.31 -6.41 16 15 C 0.13 0.76 5.41 -4.49 -0.02 0.73 16 16 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 17 C 0.44 10.25 7.47 -10.99 -0.08 10.16 16 18 O -0.58 -15.34 13.91 5.55 0.08 -15.26 16 19 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.06 0.89 6.47 -51.93 -0.34 0.56 16 29 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 0.86 6.55 -51.93 -0.34 0.52 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 1.91 7.60 -40.82 -0.31 1.60 16 36 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.15 7.99 -51.93 -0.41 -0.27 16 39 H 0.08 0.19 7.56 -51.93 -0.39 -0.21 16 40 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.90 7.36 -51.93 -0.38 0.52 16 43 H 0.40 3.29 8.80 -40.82 -0.36 2.94 16 44 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 45 H 0.08 0.23 8.12 -51.93 -0.42 -0.19 16 46 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 47 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 48 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 49 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -37.04 394.39 -7.67 -44.70 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.70 Total: 9.57 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -0.09 Total: 14.27 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.07 Total: -59.34 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: 0.26 Total: -31.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.04 -7.67 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.748 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds