Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99826 * 2 1 4 4 C 1.52998 * 109.47474 * 293.95742 * 3 2 1 5 5 N 1.46494 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00396 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99683 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.60443 * 294.43512 * 8 6 5 10 10 C 1.53344 * 109.60056 * 54.76063 * 8 6 5 11 11 C 1.53078 * 108.42608 * 52.39115 * 10 8 6 12 12 C 1.50168 * 109.82252 * 48.94058 * 11 10 8 13 13 O 1.21279 * 118.24635 * 162.38050 * 12 11 10 14 14 N 1.33238 * 123.59540 * 342.28431 * 12 11 10 15 15 C 1.45749 * 124.07362 * 2.38590 * 14 12 11 16 16 C 1.46899 * 110.99762 * 123.95505 * 2 1 3 17 17 C 1.50696 * 109.47176 * 66.04764 * 16 2 1 18 18 O 1.21293 * 119.99942 * 359.97438 * 17 16 2 19 19 N 1.34775 * 119.99918 * 179.97438 * 17 16 2 20 20 C 1.37102 * 119.99636 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00288 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99675 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99931 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99767 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47496 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47146 * 120.00467 * 24 22 20 27 27 H 1.48505 * 109.47125 * 240.00157 * 24 22 20 28 28 H 1.09002 * 109.46891 * 59.99630 * 1 2 3 29 29 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46709 * 300.00194 * 1 2 3 31 31 H 1.09000 * 109.46893 * 173.95255 * 3 2 1 32 32 H 1.09000 * 109.46937 * 53.95556 * 3 2 1 33 33 H 1.08997 * 109.46964 * 59.99775 * 4 3 2 34 34 H 1.09007 * 109.46844 * 300.00250 * 4 3 2 35 35 H 0.96999 * 119.99834 * 359.97438 * 5 4 3 36 36 H 1.08998 * 109.47259 * 180.32165 * 9 8 6 37 37 H 1.08996 * 109.47275 * 300.32407 * 9 8 6 38 38 H 1.08999 * 109.46766 * 60.32449 * 9 8 6 39 39 H 1.08998 * 109.67508 * 292.65426 * 10 8 6 40 40 H 1.09002 * 109.67199 * 172.11829 * 10 8 6 41 41 H 1.08992 * 109.40147 * 169.02796 * 11 10 8 42 42 H 1.09002 * 109.39828 * 288.85618 * 11 10 8 43 43 H 0.97004 * 117.97746 * 182.30729 * 14 12 11 44 44 H 1.09007 * 109.30179 * 220.53699 * 15 14 12 45 45 H 1.08994 * 109.13444 * 101.04707 * 15 14 12 46 46 H 1.09001 * 109.46905 * 186.04563 * 16 2 1 47 47 H 1.08991 * 109.47159 * 306.04316 * 16 2 1 48 48 H 0.96993 * 120.00402 * 0.02562 * 19 17 16 49 49 H 0.96994 * 119.99653 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4250 -1.3184 6 6 1.9565 4.2238 -2.3852 7 8 1.3415 3.8104 -3.3453 8 6 2.4966 5.6307 -2.3852 9 6 1.7866 6.4531 -1.3080 10 6 4.0034 5.6033 -2.1018 11 6 4.6625 4.6298 -3.0823 12 6 4.1985 4.9228 -4.4801 13 8 4.8471 4.4807 -5.4047 14 7 3.1118 5.6408 -4.7610 15 6 2.2675 6.2719 -3.7545 16 6 1.9954 -0.7660 1.1376 17 6 1.6370 -2.2204 0.9728 18 8 1.0047 -2.5831 0.0033 19 7 2.0189 -3.1181 1.9027 20 6 1.6922 -4.4412 1.7530 21 1 1.1293 -4.7642 0.8898 22 6 2.0865 -5.3669 2.7115 23 7 2.7719 -4.9740 3.7616 24 14 1.6408 -7.1694 2.5079 25 1 0.8718 -7.3503 1.2505 26 1 2.8820 -7.9827 2.4498 27 1 0.8149 -7.6085 3.6613 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5611 1.9273 0.8309 33 1 0.5472 2.0845 -1.4264 34 1 2.0658 1.5016 -2.1492 35 1 2.6491 3.7555 -0.5507 36 1 2.1747 7.4716 -1.3137 37 1 0.7159 6.4712 -1.5115 38 1 1.9633 6.0024 -0.3315 39 1 4.1785 5.2690 -1.0793 40 1 4.4207 6.6009 -2.2389 41 1 5.7454 4.7406 -3.0295 42 1 4.3896 3.6085 -2.8169 43 1 2.8679 5.7514 -5.6933 44 1 1.2212 6.1543 -4.0368 45 1 2.5089 7.3334 -3.7002 46 1 3.0797 -0.6611 1.1756 47 1 1.5612 -0.3873 2.0627 48 1 2.5242 -2.8281 2.6781 49 1 3.0468 -5.6200 4.4308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -138.095818 kcal Electronic energy + Delta-G solvation = -29877.757011 eV Core-core repulsion = 25645.266125 eV Total energy + Delta-G solvation = -4232.490886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16778 -40.46840 -40.18992 -38.29123 -37.45774 -36.05974 -35.63460 -34.38448 -33.26982 -32.36856 -30.61977 -29.07785 -27.21259 -27.05343 -25.73049 -25.18482 -23.92662 -22.35404 -21.85292 -20.97370 -19.92214 -19.84877 -18.26964 -17.82579 -17.56087 -17.24233 -17.09722 -16.97580 -16.58168 -16.56276 -16.10749 -16.03890 -15.57894 -15.27192 -15.15237 -14.93769 -14.65041 -14.52413 -14.34576 -13.95952 -13.77845 -13.48542 -13.44601 -13.42100 -13.11696 -13.03806 -12.92624 -12.57248 -12.55715 -12.39907 -12.38943 -12.23581 -12.13397 -12.06931 -11.76703 -11.46137 -10.87672 -10.78491 -10.28491 -10.13982 -10.06571 -9.98570 -9.22437 -8.46213 -5.94064 1.36233 1.41741 1.55398 1.57394 1.61552 1.97596 2.07332 2.30286 2.34673 2.89854 3.21023 3.37843 3.42859 3.49378 3.64849 3.72385 3.84144 3.99788 4.07197 4.26278 4.34549 4.37018 4.37846 4.47266 4.53911 4.60397 4.64003 4.64217 4.69711 4.75597 4.85460 4.87222 4.94584 4.95818 5.00652 5.13731 5.21391 5.35184 5.38167 5.42420 5.76279 5.86093 6.05577 6.18625 6.31922 6.53271 6.62476 7.14868 7.16090 7.24366 7.58565 8.15240 8.71349 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.001852 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.971155 B =15112.681606 C =15422.649185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.053 3.947 4 C 0.131 3.869 5 N -0.709 5.709 6 C 0.514 3.486 7 O -0.581 6.581 8 C -0.091 4.091 9 C -0.134 4.134 10 C -0.104 4.104 11 C -0.142 4.142 12 C 0.508 3.492 13 O -0.620 6.620 14 N -0.706 5.706 15 C 0.125 3.875 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.418 0.582 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.399 0.601 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.075 0.925 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 31.507 -1.941 31.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.075 4.075 4 C 0.006 3.994 5 N -0.363 5.363 6 C 0.301 3.699 7 O -0.460 6.460 8 C -0.094 4.094 9 C -0.192 4.192 10 C -0.141 4.141 11 C -0.182 4.182 12 C 0.297 3.703 13 O -0.504 6.504 14 N -0.355 5.355 15 C 0.001 3.999 16 C -0.069 4.069 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.234 0.766 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.093 0.907 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.756 30.385 -3.730 30.664 hybrid contribution -0.369 -0.973 0.567 1.185 sum 1.386 29.413 -3.163 29.615 Atomic orbital electron populations 1.22443 0.86933 1.02277 1.00550 1.61310 1.08877 1.13387 1.43137 1.22254 1.01883 0.87276 0.96038 1.21043 0.98629 0.81884 0.97870 1.45715 1.57486 1.12963 1.20107 1.21085 0.78834 0.88273 0.81690 1.90746 1.42879 1.76560 1.35821 1.21268 0.98529 0.91174 0.98469 1.21827 1.00147 1.00958 0.96222 1.21899 0.90182 1.01528 1.00525 1.21765 1.04158 1.02084 0.90180 1.20756 0.80071 0.76720 0.92803 1.90732 1.56900 1.54055 1.48667 1.45383 1.26338 1.52145 1.11611 1.21581 0.95199 0.97523 0.85575 1.21727 1.02355 0.89760 0.93100 1.20884 0.83666 0.89020 0.83812 1.90482 1.45210 1.81541 1.33115 1.41925 1.50101 1.06966 1.22230 1.19654 1.34206 0.84175 1.07954 0.90597 1.25989 0.96361 1.04136 0.94773 1.69666 1.38148 1.37017 1.11214 0.84910 0.78242 0.77239 0.78187 1.20071 1.19662 1.19527 0.91088 0.92773 0.94401 0.88287 0.91593 0.92516 0.93588 0.74407 0.87988 0.92215 0.89712 0.86618 0.86956 0.86465 0.89527 0.76596 0.90242 0.86837 0.86693 0.90720 0.76903 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.96 127.69 1.14 1.95 16 2 N -0.54 -16.38 4.50 -927.05 -4.17 -20.55 16 3 C 0.05 1.01 5.07 86.30 0.44 1.45 16 4 C 0.13 2.74 5.60 86.38 0.48 3.22 16 5 N -0.71 -9.54 5.31 -463.08 -2.46 -12.00 16 6 C 0.51 8.74 4.74 87.66 0.42 9.15 16 7 O -0.58 -16.34 15.60 -3.03 -0.05 -16.39 16 8 C -0.09 -0.68 0.65 -52.84 -0.03 -0.71 16 9 C -0.13 -0.15 8.44 71.98 0.61 0.46 16 10 C -0.10 -0.43 4.73 30.74 0.15 -0.29 16 11 C -0.14 -1.97 5.51 29.71 0.16 -1.81 16 12 C 0.51 11.46 7.44 87.73 0.65 12.11 16 13 O -0.62 -20.68 17.78 -3.03 -0.05 -20.73 16 14 N -0.71 -11.97 5.11 -467.48 -2.39 -14.36 16 15 C 0.12 1.16 5.41 86.50 0.47 1.63 16 16 C 0.06 1.97 5.45 85.56 0.47 2.44 16 17 C 0.44 20.52 7.47 87.66 0.66 21.17 16 18 O -0.62 -34.19 13.91 -3.07 -0.04 -34.23 16 19 N -0.57 -29.03 5.29 -306.98 -1.62 -30.65 16 20 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.06 13.05 21.67 0.28 -48.78 16 24 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.07 2.03 6.47 -2.39 -0.02 2.02 16 29 H 0.05 2.18 5.82 -2.39 -0.01 2.17 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.52 7.93 -2.39 -0.02 1.51 16 32 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.06 1.36 6.55 -2.39 -0.02 1.35 16 34 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.42 2.25 7.60 -92.71 -0.70 1.55 16 36 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.08 -0.11 7.99 -2.39 -0.02 -0.13 16 39 H 0.12 -0.15 7.56 -2.39 -0.02 -0.17 16 40 H 0.11 0.01 8.13 -2.39 -0.02 -0.01 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.48 7.36 -2.39 -0.02 1.46 16 43 H 0.40 6.87 8.80 -92.71 -0.82 6.06 16 44 H 0.08 0.91 7.73 -2.38 -0.02 0.90 16 45 H 0.11 0.25 8.12 -2.39 -0.02 0.23 16 46 H 0.12 3.11 7.93 -2.39 -0.02 3.09 16 47 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 48 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 49 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -87.67 394.39 -2.85 -90.52 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -1.25 Total: 29.41 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 6.89 Total: 32.64 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -10.36 Total: -126.34 kcal Atomic # 8 Polarization: -71.21 SS G_CDS: -0.14 Total: -71.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -87.67 -2.85 -90.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.577 kcal (2) G-P(sol) polarization free energy of solvation -87.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds